Guide to the Human Genome
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Name: LRP1B Sequence: fasta or formatted (4599aa) NCBI GI: 93102379
Description:

low density lipoprotein-related protein 1B precursor

Referenced in:

Epidermal Growth Factor
Gene Structure
Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3        200           2
 C cysteine            7.5        345           2
 D aspartate           8.8        405           3
 E glutamate           5.4        250           2
 F phenylalanine       3.0        139           2
 G glycine             7.7        356           3
 H histidine           2.8        131           2
 I isoleucine          6.0        277           2
 K lysine              4.8        223           2
 L leucine             6.8        314           2
 M methionine          1.5         68           2
 N asparagine          6.3        290           3
 P proline             4.0        185           2
 Q glutamine           3.3        152           2
 R arginine            5.1        236           2
 S serine              6.9        318           3
 T threonine           5.4        249           2
 V valine              4.7        216           3
 W tryptophan          1.9         88           2
 Y tyrosine            3.4        157           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein-related protein 1B precursor... 
LRP1                  0.598   low density lipoprotein-related protein 1 
LRP2                  0.249   low density lipoprotein-related protein 2 
LRP4                  0.106   low density lipoprotein receptor-related protein 4 ...
LRP6                  0.074   low density lipoprotein receptor-related protein 6 ...
LRP5                  0.073   low density lipoprotein receptor-related protein 5 ...
LRP8                  0.051   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.051   low density lipoprotein receptor-related protein 8 i...
VLDLR                 0.050   very low density lipoprotein receptor isoform a [Hom...
VLDLR                 0.050   very low density lipoprotein receptor isoform b [Hom...
LDLR                  0.047   low density lipoprotein receptor precursor 
SORL1                 0.042   sortilin-related receptor containing LDLR class A rep...
LRP8                  0.041   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.037   low density lipoprotein receptor-related protein 8 i...
EGF                   0.020   epidermal growth factor (beta-urogastrone) 
CORIN                 0.020   corin 
SSPO                  0.017   SCO-spondin 
NID1                  0.016   nidogen 1 precursor 
LRP5L                 0.014   low density lipoprotein receptor-related protein 5-l...
LRP5L                 0.014   low density lipoprotein receptor-related protein 5-...
ST14                  0.012   matriptase 
NID2                  0.012   nidogen 2 precursor 
HSPG2                 0.012   heparan sulfate proteoglycan 2 
VWDE                  0.011   von Willebrand factor D and EGF domains 
LRP12                 0.011   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.011   low density lipoprotein-related protein 12 isoform a ...
NOTCH3                0.010   Notch homolog 3 
NOTCH1                0.010   notch1 preproprotein 
NOTCH4                0.010   notch4 preproprotein 
NOTCH2                0.010   notch 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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