Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PDCD4 Sequence: fasta or formatted (469aa) NCBI GI: 21735596
Description:

programmed cell death 4 isoform 1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [458aa] programmed cell death 4 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         24           2
 C cysteine            1.5          7           1
 D aspartate           7.9         37           3
 E glutamate           8.5         40           2
 F phenylalanine       2.1         10           1
 G glycine             8.7         41           3
 H histidine           1.7          8           2
 I isoleucine          4.7         22           2
 K lysine              6.8         32           2
 L leucine            10.4         49           2
 M methionine          2.1         10           1
 N asparagine          4.1         19           1
 P proline             3.8         18           1
 Q glutamine           2.6         12           2
 R arginine            5.8         27           2
 S serine              9.2         43           2
 T threonine           4.3         20           2
 V valine              7.2         34           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   programmed cell death 4 isoform 1 
PDCD4                 0.967   programmed cell death 4 isoform 2 
EIF4G2                0.026   eukaryotic translation initiation factor 4 gamma, 2...
EIF4G2                0.026   eukaryotic translation initiation factor 4 gamma, 2 i...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G3                0.016   eukaryotic translation initiation factor 4 gamma, 3 ...
SSU72                 0.013   Ssu72 RNA polymerase II CTD phosphatase homolog [Homo...
SRRM2                 0.013   splicing coactivator subunit SRm300 
INTS3                 0.010   integrator complex subunit 3 
TNKS1BP1              0.010   tankyrase 1-binding protein 1 
ACTR10                0.010   uncharacterized hypothalamus protein HARP11 
OGFR                  0.009   opioid growth factor receptor 
LOC286528             0.009   PREDICTED: similar to Ssu72 RNA polymerase II CTD p...
LOC286528             0.009   PREDICTED: similar to Ssu72 RNA polymerase II CTD ph...
LOC286528             0.009   PREDICTED: similar to Ssu72 RNA polymerase II CTD ph...
COL18A1               0.009   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.009   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.009   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
INPP5J                0.008   phosphatidylinositol (4,5) bisphosphate 5-phosphatas...
LOC100291994          0.008   PREDICTED: hypothetical protein XP_002346350 
RBMX                  0.008   RNA binding motif protein, X-linked 
LOC100293513          0.008   PREDICTED: hypothetical protein 
LOC100291129          0.008   PREDICTED: hypothetical protein XP_002347815 
LOC100288194          0.008   PREDICTED: hypothetical protein XP_002343605 
LOC100294343          0.008   PREDICTED: hypothetical protein XP_002344111 
SERBP1                0.008   SERPINE1 mRNA binding protein 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press