Guide to the Human Genome
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Name: NET1 Sequence: fasta or formatted (542aa) NCBI GI: 19923327
Description:

neuroepithelial cell transforming gene 1 isoform 2

Referenced in:

Rho and Rac

Other entries for this name:
alt prot [596aa] neuroepithelial cell transforming gene 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         33           2
 C cysteine            1.3          7           1
 D aspartate           5.7         31           1
 E glutamate           7.4         40           3
 F phenylalanine       3.1         17           1
 G glycine             5.0         27           2
 H histidine           3.1         17           1
 I isoleucine          5.5         30           2
 K lysine              6.1         33           2
 L leucine            11.3         61           3
 M methionine          1.7          9           1
 N asparagine          2.8         15           2
 P proline             5.4         29           2
 Q glutamine           6.1         33           2
 R arginine            8.7         47           2
 S serine              8.3         45           2
 T threonine           4.4         24           2
 V valine              5.0         27           1
 W tryptophan          0.7          4           1
 Y tyrosine            2.4         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuroepithelial cell transforming gene 1 isoform 2 [... 
NET1                  0.946   neuroepithelial cell transforming gene 1 isoform 1 ...
ARHGEF3               0.506   Rho guanine nucleotide exchange factor 3 isoform 3 [H...
ARHGEF3               0.504   Rho guanine nucleotide exchange factor 3 isoform 2 ...
ARHGEF3               0.503   Rho guanine nucleotide exchange factor 3 isoform 1 ...
ITSN1                 0.092   intersectin 1 isoform ITSN-l 
ITSN2                 0.076   intersectin 2 isoform 3 
ITSN2                 0.076   intersectin 2 isoform 1 
PREX2                 0.065   DEP domain containing 2 isoform b 
PREX2                 0.065   DEP domain containing 2 isoform a 
PREX1                 0.064   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
ARHGEF12              0.061   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
ARHGEF1               0.056   Rho guanine nucleotide exchange factor 1 isoform 1 [...
ARHGEF1               0.056   Rho guanine nucleotide exchange factor 1 isoform 3 [...
ARHGEF1               0.056   Rho guanine nucleotide exchange factor 1 isoform 2 [...
SGEF                  0.052   Src homology 3 domain-containing guanine nucleotide...
AKAP13                0.050   A-kinase anchor protein 13 isoform 1 
AKAP13                0.050   A-kinase anchor protein 13 isoform 3 
AKAP13                0.050   A-kinase anchor protein 13 isoform 2 
ARHGEF9               0.049   Cdc42 guanine exchange factor 9 
PLEKHG6               0.047   pleckstrin homology domain-containing family G memb...
PLEKHG6               0.047   pleckstrin homology domain-containing family G memb...
PLEKHG6               0.047   pleckstrin homology domain-containing family G memb...
DNMBP                 0.046   dynamin binding protein 
VAV2                  0.046   vav 2 guanine nucleotide exchange factor isoform 2 [...
VAV2                  0.046   vav 2 guanine nucleotide exchange factor isoform 1 ...
ARHGEF16              0.046   Rho guanine exchange factor 16 
ARHGEF11              0.046   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.046   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
ARHGEF4               0.046   Rho guanine nucleotide exchange factor 4 isoform a [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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