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Search of human proteins with 19743852
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19743852 decorin isoform d precursor [Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19743852 decorin isoform d precursor [Homo sapiens] 361 e-100
gi|19743850 decorin isoform c precursor [Homo sapiens] 280 4e-76
gi|19743848 decorin isoform b precursor [Homo sapiens] 273 7e-74
gi|19743846 decorin isoform a preproprotein [Homo sapiens] 240 5e-64
gi|4503271 decorin isoform a preproprotein [Homo sapiens] 240 5e-64
gi|19743854 decorin isoform e precursor [Homo sapiens] 152 1e-37
gi|4502403 biglycan preproprotein [Homo sapiens] 121 3e-28
gi|41350214 asporin [Homo sapiens] 99 1e-21
gi|11321571 slit homolog 3 [Homo sapiens] 65 2e-11
gi|126517478 peroxidasin homolog-like [Homo sapiens] 65 4e-11
gi|109150416 peroxidasin [Homo sapiens] 63 1e-10
gi|13562088 leucine-rich repeat-containing 3 precursor [Homo sap... 62 2e-10
gi|188528675 slit homolog 1 [Homo sapiens] 61 4e-10
gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens] 60 7e-10
gi|4759146 slit homolog 2 [Homo sapiens] 60 1e-09
gi|52353306 leucine rich repeat containing 55 [Homo sapiens] 58 4e-09
gi|229089140 leucine rich repeat containing 24 [Homo sapiens] 57 8e-09
gi|84781739 leucine-rich repeats and transmembrane domains 2 [Ho... 57 1e-08
gi|62912470 leucine-rich repeat-containing G protein-coupled rec... 57 1e-08
gi|16418445 leucine rich repeat containing 3B [Homo sapiens] 56 1e-08
gi|34577057 fibronectin leucine rich transmembrane protein 1 [Ho... 56 2e-08
gi|54607118 leucine-rich repeats and immunoglobulin-like domains... 55 2e-08
gi|62865621 toll-like receptor 10 precursor [Homo sapiens] 52 3e-07
gi|62865618 toll-like receptor 10 precursor [Homo sapiens] 52 3e-07
gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens] 52 3e-07
gi|21281681 leucine-rich repeat LGI family, member 3 [Homo sapiens] 51 4e-07
gi|38202222 fibronectin leucine rich transmembrane protein 3 pre... 51 4e-07
gi|7019383 fibronectin leucine rich transmembrane protein 3 prec... 51 4e-07
gi|30425563 reticulon 4 receptor-like 2 [Homo sapiens] 51 4e-07
gi|198041768 synleurin [Homo sapiens] 50 7e-07
>gi|19743852 decorin isoform d precursor [Homo sapiens]
Length = 172
Score = 361 bits (927), Expect = e-100
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVV 120
HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVV
Sbjct: 61 HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVV 120
Query: 121 GSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 172
GSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK
Sbjct: 121 GSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 172
>gi|19743850 decorin isoform c precursor [Homo sapiens]
Length = 212
Score = 280 bits (716), Expect = 4e-76
Identities = 148/219 (67%), Positives = 150/219 (68%), Gaps = 54/219 (24%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNL------------- 107
HLRVVQCSDLG LPP T L L NKI+ + K L NL
Sbjct: 61 HLRVVQCSDLG-------LPPSLTELHLDGNKISRVDAASLKGLNNLAKLGLSFNSISAV 113
Query: 108 ----------------------------------HVVYLHNNNISVVGSSDFCPPGHNTK 133
VVYLHNNNISVVGSSDFCPPGHNTK
Sbjct: 114 DNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVVYLHNNNISVVGSSDFCPPGHNTK 173
Query: 134 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 172
KASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK
Sbjct: 174 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 212
>gi|19743848 decorin isoform b precursor [Homo sapiens]
Length = 250
Score = 273 bits (697), Expect = 7e-74
Identities = 148/250 (59%), Positives = 153/250 (61%), Gaps = 78/250 (31%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDL-------------------------------GLDKVPKDLPPDTTLLDLQ 89
HLRVVQCSDL + +P+ LPP T L L
Sbjct: 61 HLRVVQCSDLELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLD 120
Query: 90 NNKITEIKDGDFKNLKNL------------------------------------------ 107
NKI+ + K L NL
Sbjct: 121 GNKISRVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLA 180
Query: 108 -----HVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 162
VVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV
Sbjct: 181 EHKYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 240
Query: 163 RSAIQLGNYK 172
RSAIQLGNYK
Sbjct: 241 RSAIQLGNYK 250
>gi|19743846 decorin isoform a preproprotein [Homo sapiens]
Length = 359
Score = 240 bits (612), Expect = 5e-64
Identities = 116/127 (91%), Positives = 117/127 (92%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVV 120
HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLH + L NN IS V
Sbjct: 61 HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHALILVNNKISKV 120
Query: 121 GSSDFCP 127
F P
Sbjct: 121 SPGAFTP 127
Score = 149 bits (375), Expect = 2e-36
Identities = 73/92 (79%), Positives = 78/92 (84%), Gaps = 1/92 (1%)
Query: 81 PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSGV 140
P L L NNK+T + G ++ K + VVYLHNNNISVVGSSDFCPPGHNTKKASYSGV
Sbjct: 269 PHLRELHLDNNKLTRVPGGLAEH-KYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSGV 327
Query: 141 SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 172
SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK
Sbjct: 328 SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 359
>gi|4503271 decorin isoform a preproprotein [Homo sapiens]
Length = 359
Score = 240 bits (612), Expect = 5e-64
Identities = 116/127 (91%), Positives = 117/127 (92%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVV 120
HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLH + L NN IS V
Sbjct: 61 HLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHALILVNNKISKV 120
Query: 121 GSSDFCP 127
F P
Sbjct: 121 SPGAFTP 127
Score = 149 bits (375), Expect = 2e-36
Identities = 73/92 (79%), Positives = 78/92 (84%), Gaps = 1/92 (1%)
Query: 81 PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSGV 140
P L L NNK+T + G ++ K + VVYLHNNNISVVGSSDFCPPGHNTKKASYSGV
Sbjct: 269 PHLRELHLDNNKLTRVPGGLAEH-KYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSGV 327
Query: 141 SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 172
SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK
Sbjct: 328 SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 359
>gi|19743854 decorin isoform e precursor [Homo sapiens]
Length = 75
Score = 152 bits (384), Expect = 1e-37
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLG 71
HLRVVQCSDLG
Sbjct: 61 HLRVVQCSDLG 71
>gi|4502403 biglycan preproprotein [Homo sapiens]
Length = 368
Score = 121 bits (304), Expect = 3e-28
Identities = 65/130 (50%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 7 LLLLAQVSWAGPFQQRGLFDFMLED--------EASGIGPE-VPDDRDFEPSLGPVCPFR 57
L+ L +S A PF+QRG +DF L+D EASG V D P+ +CPF
Sbjct: 7 LVSLLALSQALPFEQRGFWDFTLDDGPFMMNDEEASGADTSGVLDPDSVTPTYSAMCPFG 66
Query: 58 CQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNI 117
C CHLRVVQCSDLGL VPK++ PDTTLLDLQNN I+E++ DFK L++L+ + L NN I
Sbjct: 67 CHCHLRVVQCSDLGLKSVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 126
Query: 118 SVVGSSDFCP 127
S + F P
Sbjct: 127 SKIHEKAFSP 136
Score = 110 bits (276), Expect = 5e-25
Identities = 53/92 (57%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 81 PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSGV 140
P L L NNK+ + G +LK L VVYLH+NNI+ VG +DFCP G K+A Y+G+
Sbjct: 277 PTLRELHLDNNKLARVPSG-LPDLKLLQVVYLHSNNITKVGVNDFCPMGFGVKRAYYNGI 335
Query: 141 SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 172
SLF+NPV YWE+QP+TFRCV R AIQ GNYK
Sbjct: 336 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 367
Score = 33.1 bits (74), Expect = 0.12
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 72 LDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHN 131
L ++P +LP L + +N+I ++ G F L+N++ + + N + +S F P +
Sbjct: 150 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---NSGFEPGAFD 206
Query: 132 TKKASYSGVS 141
K +Y +S
Sbjct: 207 GLKLNYLRIS 216
>gi|41350214 asporin [Homo sapiens]
Length = 380
Score = 99.4 bits (246), Expect = 1e-21
Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 81 PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSGV 140
P + L+NNK+ +I G LK L +++LH+N+I+ VG +DFCP KK+ YS +
Sbjct: 289 PRVREIHLENNKLKKIPSG-LPELKYLQIIFLHSNSIARVGVNDFCPTVPKMKKSLYSAI 347
Query: 141 SLFSNPVQYWEIQPSTFRCVYVRSAIQLGNY 171
SLF+NPV+YWE+QP+TFRCV R ++QLGN+
Sbjct: 348 SLFNNPVKYWEMQPATFRCVLSRMSVQLGNF 378
Score = 94.7 bits (234), Expect = 3e-20
Identities = 60/147 (40%), Positives = 78/147 (53%), Gaps = 23/147 (15%)
Query: 1 MKATIILLLLAQVSWAGPF---QQRGLFDFMLEDEASGIGPEVPDDRD------------ 45
MK ++LL LA S A PF L + ML+D + DD D
Sbjct: 1 MKEYVLLLFLALCS-AKPFFSPSHIALKNMMLKDMEDTDDDDDDDDDDDDDDEDNSLFPT 59
Query: 46 -------FEPSLGPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKD 98
F L P+CPF CQC+ RVV CSDLGL VP ++P DT +LDLQNNKI EIK+
Sbjct: 60 REPRSHFFPFDLFPMCPFGCQCYSRVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKE 119
Query: 99 GDFKNLKNLHVVYLHNNNISVVGSSDF 125
DFK L +L+ + L+NN ++ + F
Sbjct: 120 NDFKGLTSLYGLILNNNKLTKIHPKAF 146
Score = 33.5 bits (75), Expect = 0.093
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 62 LRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVG 121
LR + S L ++P +LP L + NK+ +I+ FK + LHV+ + N +
Sbjct: 152 LRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDTFKGMNALHVLEMSANPLD--- 208
Query: 122 SSDFCPPGHNTKKASYSGVSLF 143
+ + ++ GV++F
Sbjct: 209 -------NNGIEPGAFEGVTVF 223
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 65.5 bits (158), Expect = 2e-11
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
CP +C C V C LGL VP+ +P + LDL N IT I DF LKNL V++L
Sbjct: 34 CPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLE 93
Query: 114 NNNISVVGSSDF 125
+N +SV+ F
Sbjct: 94 DNQVSVIERGAF 105
Score = 55.8 bits (133), Expect = 2e-08
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 50 LGPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHV 109
L P CP +C C VV+CS+ GL +P+ +P D T L L+ N +T + + L++L +
Sbjct: 721 LSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAV-PRELSALRHLTL 779
Query: 110 VYLHNNNISVVGSSDFCPPGH 130
+ L NN+IS++ + F H
Sbjct: 780 IDLSNNSISMLTNYTFSNMSH 800
Score = 52.8 bits (125), Expect = 1e-07
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 53 VCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIK-DGDFKNLKNLHVVY 111
VCP +C+C +V CS+ L ++P LP T L L +N+++ ++ G FK L NL +
Sbjct: 504 VCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGIFKKLPNLRKIN 563
Query: 112 LHNNNISVVGSSDF 125
L NN I V F
Sbjct: 564 LSNNKIKEVREGAF 577
Score = 45.4 bits (106), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
CP C C +V C GL ++P +LP + L+ N I I G F K L + +
Sbjct: 280 CPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDIS 339
Query: 114 NNNISVVGSSDF 125
N IS + F
Sbjct: 340 KNQISDIAPDAF 351
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 82 DTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
D L L NN I+ I+DG F+ L++L ++ L+NNNIS + + F
Sbjct: 158 DVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSF 201
Score = 30.8 bits (68), Expect = 0.60
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 85 LLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCP 127
LL L NKI ++ F++L+NL+++ L++N + + F P
Sbjct: 383 LLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAP 425
Score = 27.3 bits (59), Expect = 6.7
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 65 VQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNI 117
+ C + G + +DL +L L NN I+ I F ++ + + LH+N++
Sbjct: 169 ISCIEDGAFRALRDLE----ILTLNNNNISRILVTSFNHMPKIRTLRLHSNHL 217
>gi|126517478 peroxidasin homolog-like [Homo sapiens]
Length = 1463
Score = 64.7 bits (156), Expect = 4e-11
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 51 GPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVV 110
G CP RC C V+C L LD +P+ +P TT+LDL+ N+I EI FK LKNL+ +
Sbjct: 21 GLPCPSRCLCFKSTVRCMHLMLDHIPQ-VPQQTTVLDLRFNRIREIPGSAFKKLKNLNTL 79
Query: 111 YLHNNNISVVGSSDF 125
L+NN+I + + F
Sbjct: 80 LLNNNHIRKISRNAF 94
Score = 26.9 bits (58), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 86 LDLQNNKITEIKDGDFKNLKNLHVVYLHNN 115
L L NNK+++I G F NL +L + L +N
Sbjct: 151 LFLHNNKLSKIPAGSFSNLDSLKRLRLDSN 180
>gi|109150416 peroxidasin [Homo sapiens]
Length = 1479
Score = 62.8 bits (151), Expect = 1e-10
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 51 GPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVV 110
G CP RC C V+C L L+ VP + P T++LDL+ N+I EI+ G F+ L+NL+ +
Sbjct: 33 GAGCPSRCLCFRTTVRCMHLLLEAVPA-VAPQTSILDLRFNRIREIQPGAFRRLRNLNTL 91
Query: 111 YLHNNNISVVGSSDF 125
L+NN I + S F
Sbjct: 92 LLNNNQIKRIPSGAF 106
>gi|13562088 leucine-rich repeat-containing 3 precursor [Homo
sapiens]
Length = 257
Score = 62.0 bits (149), Expect = 2e-10
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 50 LGPVCPFRCQC--HLRVVQ--CSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLK 105
LG CP C+C H V CS GL +VP+D+P +T LL L NKI+ + DG F++L
Sbjct: 29 LGAACPQPCRCPDHAGAVAVFCSLRGLQEVPEDIPANTVLLKLDANKISHLPDGAFQHLH 88
Query: 106 NLHVVYLHNNNISVVGSSDF 125
L + L +N I +GS+ F
Sbjct: 89 RLRELDLSHNAIEAIGSATF 108
>gi|188528675 slit homolog 1 [Homo sapiens]
Length = 1534
Score = 61.2 bits (147), Expect = 4e-10
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 53 VCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIK-DGDFKNLKNLHVVY 111
VCP +C+C VV+CS L L K+P+ +P T L L NN+I+ ++ G FK L +L +
Sbjct: 512 VCPHKCRCEANVVECSSLKLTKIPERIPQSTAELRLNNNEISILEATGMFKKLTHLKKIN 571
Query: 112 LHNNNISVVGSSDF 125
L NN +S + F
Sbjct: 572 LSNNKVSEIEDGAF 585
Score = 58.2 bits (139), Expect = 4e-09
Identities = 29/72 (40%), Positives = 35/72 (48%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
CP C C V C GL +PK++P +T L+L N IT I DF LK L V+ L
Sbjct: 34 CPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLM 93
Query: 114 NNNISVVGSSDF 125
N I V F
Sbjct: 94 ENQIGAVERGAF 105
Score = 51.6 bits (122), Expect = 3e-07
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 52 PVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVY 111
P CP C C VV+CS+ L +PK +P + T L L N+ T + G K L +V
Sbjct: 732 PQCPQECACLDTVVRCSNKHLRALPKGIPKNVTELYLDGNQFT-LVPGQLSTFKYLQLVD 790
Query: 112 LHNNNISVVGSSDF 125
L NN IS + +S F
Sbjct: 791 LSNNKISSLSNSSF 804
Score = 47.0 bits (110), Expect = 8e-06
Identities = 24/72 (33%), Positives = 33/72 (45%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
CP C C +V C GL +P +LP T + L+ N I I G F + L + L
Sbjct: 282 CPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLS 341
Query: 114 NNNISVVGSSDF 125
NN I+ + F
Sbjct: 342 NNQIAEIAPDAF 353
Score = 37.4 bits (85), Expect = 0.006
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 21 QRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLGLDKVPKDL- 79
+RG FD M E E + + + P F+ L + S+ + +P+
Sbjct: 101 ERGAFDDMKELERLRLNRN-------QLHMLPELLFQNNQALSRLDLSENAIQAIPRKAF 153
Query: 80 --PPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
D L L N+I+ I++G F+ L+ L V+ L+NNNI+ + S F
Sbjct: 154 RGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSF 201
Score = 33.5 bits (75), Expect = 0.093
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 86 LDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSN 145
L L+NN+I+ I + F L+N+ ++ L++N I+ V PG S S ++L +N
Sbjct: 618 LMLRNNRISCIHNDSFTGLRNVRLLSLYDNQITTVS------PGAFDTLQSLSTLNLLAN 671
Query: 146 P 146
P
Sbjct: 672 P 672
Score = 28.5 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 85 LLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
LL L NKI I+ F++L+NL ++ L++N I + F
Sbjct: 385 LLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAKGTF 425
Score = 27.3 bits (59), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 85 LLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNI 117
+L L NN IT I F ++ L LH+N++
Sbjct: 185 VLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHL 217
>gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens]
Length = 504
Score = 60.5 bits (145), Expect = 7e-10
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 36 IGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITE 95
+G PD F P CP++C C ++ C+ LGL VP +LP T LDL +N +
Sbjct: 16 VGLGTPDSEGFPPRALHNCPYKCICAADLLSCTGLGLQDVPAELPAATADLDLSHNALQR 75
Query: 96 IKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
++ G L L ++L +N + +G F
Sbjct: 76 LRPGWLAPLFQLRALHLDHNELDALGRGVF 105
>gi|4759146 slit homolog 2 [Homo sapiens]
Length = 1529
Score = 59.7 bits (143), Expect = 1e-09
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
CP +C C V C L L VP+++P +T LDL N IT I DF L++L V+ L
Sbjct: 28 CPAQCSCSGSTVDCHGLALRSVPRNIPRNTERLDLNGNNITRITKTDFAGLRHLRVLQLM 87
Query: 114 NNNISVVGSSDF 125
N IS + F
Sbjct: 88 ENKISTIERGAF 99
Score = 56.2 bits (134), Expect = 1e-08
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 42 DDRDFEPSLGPV--CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDG 99
DD + + S P+ CP C C VV+CS+ GL +PK +P D T L L N+ T +
Sbjct: 713 DDGNDDNSCSPLSRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK- 771
Query: 100 DFKNLKNLHVVYLHNNNISVVGSSDF 125
+ N K+L ++ L NN IS + + F
Sbjct: 772 ELSNYKHLTLIDLSNNRISTLSNQSF 797
Score = 51.2 bits (121), Expect = 4e-07
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 40 VPDDRDFEPSLGP------VCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKI 93
+P D+ L CP +C+C V CS+ L+K+P+ +P T L L NN+
Sbjct: 486 IPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEF 545
Query: 94 TEIK-DGDFKNLKNLHVVYLHNNNISVVGSSDF 125
T ++ G FK L L + NN I+ + F
Sbjct: 546 TVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 578
Score = 50.8 bits (120), Expect = 6e-07
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
CP C C +V C GL ++P +LP T + L+ N I I G F K L + L
Sbjct: 273 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS 332
Query: 114 NNNISVVGSSDF 125
NN IS + F
Sbjct: 333 NNQISELAPDAF 344
Score = 35.8 bits (81), Expect = 0.019
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 82 DTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
D L L N+I+ I+DG F+ L++L V+ L+NNNI+ + + F
Sbjct: 152 DIKNLQLDYNQISCIEDGAFRALRDLEVLTLNNNNITRLSVASF 195
Score = 31.2 bits (69), Expect = 0.46
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 65 VQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNI 117
+ C + G + +DL +L L NN IT + F ++ L LH+NN+
Sbjct: 163 ISCIEDGAFRALRDLE----VLTLNNNNITRLSVASFNHMPKLRTFRLHSNNL 211
Score = 30.0 bits (66), Expect = 1.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 85 LLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCP 127
LL L NKI ++ F++L NL+++ L++N + + F P
Sbjct: 376 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 418
>gi|52353306 leucine rich repeat containing 55 [Homo sapiens]
Length = 341
Score = 58.2 bits (139), Expect = 4e-09
Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 11 AQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDL 70
AQ+ W GP L +L A+G+ G CP C C +VV CS
Sbjct: 49 AQLPWPGPPHPAMLLISLLL--AAGL---------MHSDAGTSCPVLCTCRNQVVDCSSQ 97
Query: 71 GLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNI 117
L VP DLP DT L L +N+IT + G L V+ LHNN++
Sbjct: 98 RLFSVPPDLPMDTRNLSLAHNRITAVPPGYLTCYMELQVLDLHNNSL 144
>gi|229089140 leucine rich repeat containing 24 [Homo sapiens]
Length = 513
Score = 57.0 bits (136), Expect = 8e-09
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
CP C+C+ V+C L L VP +PP T L LQ+N I ++ G L L +YLH
Sbjct: 23 CPAACRCYSATVECGALRLRVVPLGIPPGTQTLFLQDNNIARLEPGALAPLAALRRLYLH 82
Query: 114 NNNISVVGSSDF 125
NN++ + + F
Sbjct: 83 NNSLRALEAGAF 94
>gi|84781739 leucine-rich repeats and transmembrane domains 2 [Homo
sapiens]
Length = 370
Score = 56.6 bits (135), Expect = 1e-08
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 52 PVCPFRCQCHLRV--VQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHV 109
P CPF C+C R V CS LGL VP D+P T L L NNK++ + F NL +L
Sbjct: 37 PTCPFSCKCDSRSLEVDCSGLGLTTVPPDVPAATRTLLLLNNKLSALPSWAFANLSSLQR 96
Query: 110 VYLHNNNISVVGSSDF 125
+ L NN + + S F
Sbjct: 97 LDLSNNFLDRLPRSIF 112
>gi|62912470 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 1 [Homo sapiens]
Length = 967
Score = 56.6 bits (135), Expect = 1e-08
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 47 EPSLGPV-CPFRCQCH----LRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDF 101
+P GP CP C C + CS+LGL VP DL P T LDL N +TE++ G F
Sbjct: 27 QPGPGPTACPAPCHCQEDGIMLSADCSELGLSAVPGDLDPLTAYLDLSMNNLTELQPGLF 86
Query: 102 KNLKNLHVVYLHNNNISVVGSSDF 125
+L+ L + L N++S + F
Sbjct: 87 HHLRFLEELRLSGNHLSHIPGQAF 110
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 49 SLGPVCPFRCQCHLRVVQCSDLGLDKVPK---DLPPDTTLLDLQNNKITEIKDGDFKNLK 105
SL P F LR + D L ++P + P + L N+I+ I D F+NL
Sbjct: 151 SLVPERSFEGLSSLRHLWLDDNALTEIPVRALNNLPALQAMTLALNRISHIPDYAFQNLT 210
Query: 106 NLHVVYLHNNNISVVGSSDF 125
+L V++LHNN I +G+ F
Sbjct: 211 SLVVLHLHNNRIQHLGTHSF 230
>gi|16418445 leucine rich repeat containing 3B [Homo sapiens]
Length = 259
Score = 56.2 bits (134), Expect = 1e-08
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 53 VCPFRCQCHLRV---VQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHV 109
+CP C C V CS+ L ++P+DLPP+T LL L +N+IT I + FK+L L V
Sbjct: 33 MCPKGCLCSSSGGLNVTCSNANLKEIPRDLPPETVLLYLDSNQITSIPNEIFKDLHQLRV 92
Query: 110 VYLHNNNISVVGSSDF 125
+ L N I + F
Sbjct: 93 LNLSKNGIEFIDEHAF 108
>gi|34577057 fibronectin leucine rich transmembrane protein 1 [Homo
sapiens]
Length = 674
Score = 55.8 bits (133), Expect = 2e-08
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIK-DGDFKNLKNLHVVYL 112
CP C+C + C+D GL +P D+P D T L LQNN+I D K N+ V+YL
Sbjct: 54 CPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLKTKVNVQVIYL 113
Query: 113 HNNNI 117
+ N++
Sbjct: 114 YENDL 118
Score = 29.6 bits (65), Expect = 1.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 61 HLRVVQCSDLGLDKVPKDLPP---DTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNN 115
HL+ + D + +P + + LDL NN +T + G F +L NL + L NN
Sbjct: 271 HLQKLYLQDNAISHIPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLGNLAQLLLRNN 328
>gi|54607118 leucine-rich repeats and immunoglobulin-like domains 1
[Homo sapiens]
Length = 1093
Score = 55.5 bits (132), Expect = 2e-08
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 29 LEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDL 88
LE + GP P C C C + C GL +P DLP T L+L
Sbjct: 28 LEPVTAAAGPRAP------------CAAACTCAGDSLDCGGRGLAALPGDLPSWTRSLNL 75
Query: 89 QNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGS 122
NK++EI F++L NL VYL+NN ++ V S
Sbjct: 76 SYNKLSEIDPAGFEDLPNLQEVYLNNNELTAVPS 109
Score = 33.5 bits (75), Expect = 0.093
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 85 LLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGS 122
+L LQ N I+++ DG F L +HV++L N++ V S
Sbjct: 239 VLKLQRNNISKLTDGAFWGLSKMHVLHLEYNSLVEVNS 276
Score = 32.3 bits (72), Expect = 0.21
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 81 PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
P T LDL N+I I+ F+ L +L V+ L NNIS + F
Sbjct: 211 PRLTQLDLNRNRIRLIEGLTFQGLNSLEVLKLQRNNISKLTDGAF 255
Score = 28.9 bits (63), Expect = 2.3
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 86 LDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSG 139
L LQ+NKI ++ K +L V+ L NNI+ V ++ F P G K+ + +G
Sbjct: 120 LFLQHNKIRSVEGSQLKAYLSLEVLDLSLNNITEVRNTCF-PHGPPIKELNLAG 172
>gi|62865621 toll-like receptor 10 precursor [Homo sapiens]
Length = 811
Score = 51.6 bits (122), Expect = 3e-07
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 33 ASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNK 92
A G PE+P++R+ + CS++ L KVP DL P TT LDL N
Sbjct: 17 AEGDAPELPEEREL-----------------MTNCSNMSLRKVPADLTPATTTLDLSYNL 59
Query: 93 ITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
+ +++ DF ++ L V+ L +N I + F
Sbjct: 60 LFQLQSSDFHSVSKLRVLILCHNRIQQLDLKTF 92
>gi|62865618 toll-like receptor 10 precursor [Homo sapiens]
Length = 811
Score = 51.6 bits (122), Expect = 3e-07
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 33 ASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNK 92
A G PE+P++R+ + CS++ L KVP DL P TT LDL N
Sbjct: 17 AEGDAPELPEEREL-----------------MTNCSNMSLRKVPADLTPATTTLDLSYNL 59
Query: 93 ITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
+ +++ DF ++ L V+ L +N I + F
Sbjct: 60 LFQLQSSDFHSVSKLRVLILCHNRIQQLDLKTF 92
>gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]
Length = 2623
Score = 51.6 bits (122), Expect = 3e-07
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 51 GPVCPFRCQCHLRV-VQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHV 109
G CP RC C++ V C+ L +P +PP+ ++L N + + + DF L L +
Sbjct: 26 GKACPRRCACYMPTEVHCTFRYLTSIPDSIPPNVERINLGYNSLVRLMETDFSGLTKLEL 85
Query: 110 VYLHNNNISVVGSSDF 125
+ LH+N I + F
Sbjct: 86 LMLHSNGIHTIPDKTF 101
>gi|21281681 leucine-rich repeat LGI family, member 3 [Homo sapiens]
Length = 548
Score = 51.2 bits (121), Expect = 4e-07
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 48 PSLGPVCPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNL 107
P P CP C C C D VP++LP + L L N +EI+DG F +L L
Sbjct: 33 PPKTPPCPPSCSCTRDTAFCVDS--KAVPRNLPSEVISLTLVNAAFSEIQDGAFSHLPLL 90
Query: 108 HVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQ 167
+ L++N +++G + F H Y LF W + TFR + + +
Sbjct: 91 QFLLLNSNKFTLIGDNAFTGLSH----LQY----LFIENNDIWALSKFTFRGLKSLTHLS 142
Query: 168 LGN 170
L N
Sbjct: 143 LAN 145
>gi|38202222 fibronectin leucine rich transmembrane protein 3
precursor [Homo sapiens]
Length = 649
Score = 51.2 bits (121), Expect = 4e-07
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIK-DGDFKNLKNLHVVYL 112
CP C+C + C+D L +P +P D T L LQNN+I D KNL + +YL
Sbjct: 31 CPSVCRCDAGFIYCNDRFLTSIPTGIPEDATTLYLQNNQINNAGIPSDLKNLLKVERIYL 90
Query: 113 HNNNI 117
++N++
Sbjct: 91 YHNSL 95
Score = 28.5 bits (62), Expect = 3.0
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 56 FRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNN 115
FR +LR++ S L +P LP L L +N+I+ I + L +L + L N
Sbjct: 150 FRDSNYLRLLFLSRNHLSTIPWGLPRTIEELRLDDNRISTISSPSLQGLTSLKRLVLDGN 209
Query: 116 NISVVGSSD 124
++ G D
Sbjct: 210 LLNNHGLGD 218
Score = 27.7 bits (60), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 86 LDLQNNKITEIKDGDFKNLKNLHVVYLHNN 115
LD+ NN ++ + G F +L N+ + L NN
Sbjct: 276 LDMSNNNLSNLPQGIFDDLDNITQLILRNN 305
Score = 26.9 bits (58), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 72 LDKVPKDLP-PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNIS 118
L P +LP + L LQ+N I + F L+ L+ + + NNN+S
Sbjct: 237 LTAAPVNLPGTNLRKLYLQDNHINRVPPNAFSYLRQLYRLDMSNNNLS 284
>gi|7019383 fibronectin leucine rich transmembrane protein 3
precursor [Homo sapiens]
Length = 649
Score = 51.2 bits (121), Expect = 4e-07
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 54 CPFRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIK-DGDFKNLKNLHVVYL 112
CP C+C + C+D L +P +P D T L LQNN+I D KNL + +YL
Sbjct: 31 CPSVCRCDAGFIYCNDRFLTSIPTGIPEDATTLYLQNNQINNAGIPSDLKNLLKVERIYL 90
Query: 113 HNNNI 117
++N++
Sbjct: 91 YHNSL 95
Score = 28.5 bits (62), Expect = 3.0
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 56 FRCQCHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNN 115
FR +LR++ S L +P LP L L +N+I+ I + L +L + L N
Sbjct: 150 FRDSNYLRLLFLSRNHLSTIPWGLPRTIEELRLDDNRISTISSPSLQGLTSLKRLVLDGN 209
Query: 116 NISVVGSSD 124
++ G D
Sbjct: 210 LLNNHGLGD 218
Score = 27.7 bits (60), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 86 LDLQNNKITEIKDGDFKNLKNLHVVYLHNN 115
LD+ NN ++ + G F +L N+ + L NN
Sbjct: 276 LDMSNNNLSNLPQGIFDDLDNITQLILRNN 305
Score = 26.9 bits (58), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 72 LDKVPKDLP-PDTTLLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNIS 118
L P +LP + L LQ+N I + F L+ L+ + + NNN+S
Sbjct: 237 LTAAPVNLPGTNLRKLYLQDNHINRVPPNAFSYLRQLYRLDMSNNNLS 284
>gi|30425563 reticulon 4 receptor-like 2 [Homo sapiens]
Length = 420
Score = 51.2 bits (121), Expect = 4e-07
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 48 PSLGPVCPFRCQCHLR--VVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLK 105
P P CP C C+ V C VP LPP T L LQNN I ++ G F +
Sbjct: 25 PLAAPSCPMLCTCYSSPPTVSCQANNFSSVPLSLPPSTQRLFLQNNLIRTLRPGTFGS-- 82
Query: 106 NLHVVYLHNNNISVVGSSDF 125
NL ++L +NN+S + F
Sbjct: 83 NLLTLWLFSNNLSTIYPGTF 102
Score = 28.1 bits (61), Expect = 3.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 86 LDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVV 120
L LQ N + ++D F +L NL ++LH N + ++
Sbjct: 160 LYLQENSLLHLQDDLFADLANLSHLFLHGNRLRLL 194
Score = 27.7 bits (60), Expect = 5.1
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 61 HLRVVQCSDLGLDKVPKDLPPDT-------TLLDLQNNKITEIKDGDFKNLKNLHVVYLH 113
HL+ ++ DLG ++ + L PDT L L +++ + F+ L +L +YL
Sbjct: 104 HLQALEELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQ 163
Query: 114 NNNI 117
N++
Sbjct: 164 ENSL 167
>gi|198041768 synleurin [Homo sapiens]
Length = 622
Score = 50.4 bits (119), Expect = 7e-07
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 54 CPFRCQ-CHLRVVQCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHVVYL 112
C CQ C R + C +LGL +PK+ P T L L N I+ I + + L +L +YL
Sbjct: 32 CSSVCQLCTGRQINCRNLGLSSIPKNFPESTVFLYLTGNNISYINESELTGLHSLVALYL 91
Query: 113 HNNNISVVGSSDFCPPGH 130
N+NI V F H
Sbjct: 92 DNSNILYVYPKAFVQLRH 109
Score = 43.1 bits (100), Expect = 1e-04
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 85 LLDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFS 144
+LDL NN I I + F++L+NL +YL +NN++ V S+ F S +SL
Sbjct: 184 ILDLSNNNILRISESGFQHLENLACLYLGSNNLTKVPSNAF------EVLKSLRRLSLSH 237
Query: 145 NPVQYWEIQPSTFR 158
NP++ IQP F+
Sbjct: 238 NPIE--AIQPFAFK 249
Score = 32.0 bits (71), Expect = 0.27
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 86 LDLQNNKITEIKDGDFKNLKNLHVVYLHNNNISVVGSSDF 125
L+LQ N++T + G F + L ++ L NNNI + S F
Sbjct: 161 LNLQRNRLTVLGSGTFVGMVALRILDLSNNNILRISESGF 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,476,064
Number of Sequences: 37866
Number of extensions: 338096
Number of successful extensions: 1366
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 617
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.