Guide to the Human Genome
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Name: SETBP1 Sequence: fasta or formatted (242aa) NCBI GI: 194294556
Description:

SET binding protein 1 isoform b

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [1596aa] SET binding protein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         17           2
 C cysteine            1.7          4           1
 D aspartate           4.1         10           1
 E glutamate          10.7         26           3
 F phenylalanine       3.7          9           1
 G glycine             8.7         21           2
 H histidine           0.8          2           1
 I isoleucine          3.7          9           1
 K lysine             10.7         26           3
 L leucine             6.6         16           2
 M methionine          1.2          3           1
 N asparagine          2.9          7           1
 P proline             8.7         21           2
 Q glutamine           4.5         11           1
 R arginine            5.0         12           2
 S serine             11.2         27           3
 T threonine           3.7          9           2
 V valine              3.3          8           1
 W tryptophan          1.2          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET binding protein 1 isoform b 
SETBP1                0.719   SET binding protein 1 isoform a 
ASH1L                 0.114   absent, small, or homeotic 1-like 
CCDC96                0.028   coiled-coil domain containing 96 
GNL2                  0.026   guanine nucleotide binding protein-like 2 (nucleolar)...
KIAA1409              0.026   hypothetical protein LOC57578 
NCL                   0.021   nucleolin 
TACC3                 0.021   transforming, acidic coiled-coil containing protein 3...
SRRT                  0.019   arsenate resistance protein 2 isoform e 
SRRT                  0.019   arsenate resistance protein 2 isoform d 
SRRT                  0.019   arsenate resistance protein 2 isoform c 
SRRT                  0.019   arsenate resistance protein 2 isoform a 
ACBD3                 0.019   acyl-Coenzyme A binding domain containing 3 
C14orf43              0.017   hypothetical protein LOC91748 
C14orf43              0.017   hypothetical protein LOC91748 
BRD2                  0.017   bromodomain containing 2 
BRD2                  0.017   bromodomain containing 2 
SYTL2                 0.017   synaptotagmin-like 2 isoform d 
SYTL2                 0.017   synaptotagmin-like 2 isoform c 
TRIM33                0.017   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.017   tripartite motif-containing 33 protein isoform alpha...
KDM5A                 0.017   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.017   retinoblastoma binding protein 2 isoform 2 
AEBP1                 0.015   adipocyte enhancer binding protein 1 precursor [Homo...
FYB                   0.015   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.015   FYN binding protein (FYB-120/130) isoform 1 
ATRX                  0.015   transcriptional regulator ATRX isoform 1 
ATXN2L                0.015   ataxin 2 related protein isoform B 
ATXN2L                0.015   ataxin 2 related protein isoform E 
ATXN2L                0.015   ataxin 2 related protein isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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