Guide to the Human Genome
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Name: PSIP1 Sequence: fasta or formatted (530aa) NCBI GI: 190014588
Description:

PC4 and SFRS1 interacting protein 1 isoform 2

Referenced in:

Liver

Other entries for this name:
alt prot [333aa] PC4 and SFRS1 interacting protein 1 isoform 1
alt mRNA [530aa] PC4 and SFRS1 interacting protein 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         29           2
 C cysteine            0.4          2           1
 D aspartate           6.2         33           2
 E glutamate          12.3         65           3
 F phenylalanine       2.5         13           3
 G glycine             5.8         31           2
 H histidine           1.9         10           1
 I isoleucine          3.2         17           2
 K lysine             15.8         84           3
 L leucine             4.2         22           1
 M methionine          2.1         11           1
 N asparagine          5.1         27           2
 P proline             5.1         27           2
 Q glutamine           5.7         30           2
 R arginine            5.1         27           2
 S serine              6.6         35           2
 T threonine           6.4         34           2
 V valine              5.1         27           2
 W tryptophan          0.4          2           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 
PSIP1                 1.000   PC4 and SFRS1 interacting protein 1 isoform 2 
PSIP1                 0.615   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
HDGF2                 0.177   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.176   hepatoma-derived growth factor-related protein 2 iso...
HDGFRP3               0.157   hepatoma-derived growth factor, related protein 3 [Ho...
HDGF                  0.155   hepatoma-derived growth factor isoform a 
HDGF                  0.116   hepatoma-derived growth factor isoform b 
HDGF                  0.115   hepatoma-derived growth factor isoform c 
HDGFL1                0.106   hepatoma derived growth factor-like 1 
NEFH                  0.049   neurofilament, heavy polypeptide 200kDa 
NSBP1                 0.045   nucleosomal binding protein 1 
LOC100286959          0.045   PREDICTED: hypothetical protein XP_002343921 
BOD1L                 0.045   biorientation of chromosomes in cell division 1-like...
CYLC2                 0.045   cylicin 2 
LOC100133599          0.044   PREDICTED: hypothetical protein 
RBM25                 0.043   RNA binding motif protein 25 
LOC100294088          0.043   PREDICTED: hypothetical protein, partial 
MAP1B                 0.042   microtubule-associated protein 1B 
LOC100133599          0.042   PREDICTED: hypothetical protein 
EIF5B                 0.041   eukaryotic translation initiation factor 5B 
LOC100131202          0.040   PREDICTED: hypothetical protein 
RPGR                  0.039   retinitis pigmentosa GTPase regulator isoform C [Hom...
TRDN                  0.039   triadin 
LRRIQ1                0.038   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.038   leucine-rich repeats and IQ motif containing 1 isof...
BAT2D1                0.038   HBxAg transactivated protein 2 
NEFM                  0.036   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.036   neurofilament, medium polypeptide 150kDa isoform 2 ...
LOC100288837          0.036   PREDICTED: hypothetical protein XP_002343931, parti...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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