Guide to the Human Genome
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Name: TCP10 Sequence: fasta or formatted (326aa) NCBI GI: 105553088
Description:

t-complex 10

Referenced in:

Centromere Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         34           3
 C cysteine            0.3          1           1
 D aspartate           4.6         15           2
 E glutamate           8.3         27           2
 F phenylalanine       1.5          5           1
 G glycine             7.4         24           2
 H histidine           3.1         10           1
 I isoleucine          1.8          6           1
 K lysine              6.1         20           2
 L leucine             6.7         22           2
 M methionine          2.5          8           1
 N asparagine          2.1          7           1
 P proline             9.2         30           2
 Q glutamine           7.7         25           3
 R arginine            8.9         29           2
 S serine             11.7         38           3
 T threonine           4.3         14           2
 V valine              2.1          7           1
 W tryptophan          0.9          3           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   t-complex 10 
TCP10L2               0.960   t-complex 10-like 2 
TCP10L                0.402   T-complex 10A-2 
CENPJ                 0.049   centromere protein J 
TNIK                  0.030   TRAF2 and NCK interacting kinase isoform 6 
BZRAP1                0.030   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.030   peripheral benzodiazepine receptor-associated prote...
TNIK                  0.029   TRAF2 and NCK interacting kinase isoform 5 
AFF1                  0.027   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
SRRM2                 0.027   splicing coactivator subunit SRm300 
NUMA1                 0.027   nuclear mitotic apparatus protein 1 
IQSEC2                0.027   IQ motif and Sec7 domain 2 isoform1 
MARK2                 0.025   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.024   MAP/microtubule affinity-regulating kinase 2 isofor...
SRPR                  0.024   signal recognition particle receptor 
HDAC4                 0.022   histone deacetylase 4 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.022   PREDICTED: hypothetical protein LOC80164 
MLLT1                 0.022   myeloid/lymphoid or mixed-lineage leukemia (trithora...
ZFYVE20               0.022   FYVE-finger-containing Rab5 effector protein rabenos...
LOC100289922          0.022   PREDICTED: hypothetical protein XP_002347871 
SPEN                  0.022   spen homolog, transcriptional regulator 
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.022   Treacher Collins-Franceschetti syndrome 1 isoform c ...
ANGPTL6               0.022   angiopoietin-like 6 
MARK2                 0.021   MAP/microtubule affinity-regulating kinase 2 isoform...
ZRANB2                0.021   zinc finger protein 265 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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