Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 160333222
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens] 374 e-104
gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens] 345 1e-95
gi|14249524 transmembrane protein 87B [Homo sapiens] 30 1.1
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ... 30 1.1
gi|110349719 titin isoform N2-A [Homo sapiens] 29 1.9
gi|110349717 titin isoform novex-2 [Homo sapiens] 29 1.9
gi|110349713 titin isoform novex-1 [Homo sapiens] 29 1.9
gi|110349715 titin isoform N2-B [Homo sapiens] 29 1.9
gi|126032350 protein kinase, DNA-activated, catalytic polypeptid... 29 2.5
gi|13654237 protein kinase, DNA-activated, catalytic polypeptide... 29 2.5
gi|113430845 PREDICTED: similar to protein kinase, DNA-activated... 29 2.5
gi|157388971 hypothetical protein LOC55007 [Homo sapiens] 28 4.3
gi|157388973 hypothetical protein LOC55007 [Homo sapiens] 28 4.3
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 28 5.6
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 28 5.6
gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo ... 27 7.3
gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo ... 27 7.3
gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo ... 27 7.3
gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo ... 27 7.3
gi|52317247 olfactory receptor, family 4, subfamily D, member 9 ... 27 7.3
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 27 7.3
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 27 7.3
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 27 7.3
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 27 7.3
gi|13569938 sialyltransferase 7E [Homo sapiens] 27 9.6
>gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens]
Length = 181
Score = 374 bits (959), Expect = e-104
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MAAAAWLQVLPVILLLLGAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKILF 60
MAAAAWLQVLPVILLLLGAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKILF
Sbjct: 1 MAAAAWLQVLPVILLLLGAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKILF 60
Query: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQT 120
RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQT
Sbjct: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQT 120
Query: 121 SSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKTIQMPFLKKHFLD 180
SSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKTIQMPFLKKHFLD
Sbjct: 121 SSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKTIQMPFLKKHFLD 180
Query: 181 C 181
C
Sbjct: 181 C 181
>gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens]
Length = 555
Score = 345 bits (885), Expect = 1e-95
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MAAAAWLQVLPVILLLLGAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKILF 60
MAAAAWLQVLPVILLLLGAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKILF
Sbjct: 1 MAAAAWLQVLPVILLLLGAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKILF 60
Query: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQT 120
RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQT
Sbjct: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQT 120
Query: 121 SSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKT 168
SSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKT
Sbjct: 121 SSKLFQNCSELFKTQTFSGDFMHRLPLLGEKQEAKENGTNLTFIGDKT 168
>gi|14249524 transmembrane protein 87B [Homo sapiens]
Length = 555
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 31 PATVAAA-DRSKWHIPIPSGKNYFSFGKILFRNTTIFLKFDGEPCD--LSLNITWYLKSA 87
PA V A + W + F K +F +T I L C + I W+LK
Sbjct: 37 PAAVRAVPELGLWLETVNDKSGPLIFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYH 96
Query: 88 DCYNEIYNFKAEEVELYLEKLKEKRGLS 115
C+NE N LE+L +K LS
Sbjct: 97 TCHNEHSN---------LEELFQKHKLS 115
>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
[Homo sapiens]
Length = 2671
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 91 NEIYNFKAEEVELYL-EKLKEKRGLSGKYQTSSK 123
N+ Y+FK + +EL L E++K+K+G+ + Q +SK
Sbjct: 796 NKAYSFKEQIIELELKEEIKKKKGIKEEVQLTSK 829
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 68 KFDGEPCDLSLNITWYLKSADCY-NEIYNFKAEEVELYLEKLKEKRGLSGKY 118
++ G+P ++W+ AD ++ + K L LEK+K KR SGKY
Sbjct: 16841 RYSGKP---KPKVSWFKDEADVLEDDRTHIKTTPATLALEKIKAKRSDSGKY 16889
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 68 KFDGEPCDLSLNITWYLKSADCY-NEIYNFKAEEVELYLEKLKEKRGLSGKY 118
++ G+P ++W+ AD ++ + K L LEK+K KR SGKY
Sbjct: 10536 RYSGKP---KPKVSWFKDEADVLEDDRTHIKTTPATLALEKIKAKRSDSGKY 10584
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 68 KFDGEPCDLSLNITWYLKSADCY-NEIYNFKAEEVELYLEKLKEKRGLSGKY 118
++ G+P ++W+ AD ++ + K L LEK+K KR SGKY
Sbjct: 10469 RYSGKP---KPKVSWFKDEADVLEDDRTHIKTTPATLALEKIKAKRSDSGKY 10517
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 68 KFDGEPCDLSLNITWYLKSADCY-NEIYNFKAEEVELYLEKLKEKRGLSGKY 118
++ G+P ++W+ AD ++ + K L LEK+K KR SGKY
Sbjct: 10344 RYSGKP---KPKVSWFKDEADVLEDDRTHIKTTPATLALEKIKAKRSDSGKY 10392
>gi|126032350 protein kinase, DNA-activated, catalytic polypeptide
isoform 2 [Homo sapiens]
Length = 4097
Score = 28.9 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 70 DGEPCDLSLNITWYLKSADCYNEIYNFKAEE 100
DGEP + + W L S DCYN + +K+ E
Sbjct: 2983 DGEPTEAEKDF-WELASLDCYNHLAEWKSLE 3012
>gi|13654237 protein kinase, DNA-activated, catalytic polypeptide
isoform 1 [Homo sapiens]
Length = 4128
Score = 28.9 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 70 DGEPCDLSLNITWYLKSADCYNEIYNFKAEE 100
DGEP + + W L S DCYN + +K+ E
Sbjct: 2983 DGEPTEAEKDF-WELASLDCYNHLAEWKSLE 3012
>gi|113430845 PREDICTED: similar to protein kinase, DNA-activated,
catalytic polypeptide [Homo sapiens]
Length = 4096
Score = 28.9 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 70 DGEPCDLSLNITWYLKSADCYNEIYNFKAEE 100
DGEP + + W L S DCYN + +K+ E
Sbjct: 2982 DGEPTEAEKDF-WELASLDCYNHLAEWKSLE 3011
>gi|157388971 hypothetical protein LOC55007 [Homo sapiens]
Length = 357
Score = 28.1 bits (61), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 114 LSGKYQTSSKLFQNCSELFKTQTFSGDFMHRLP 146
L Y+T S LF C E + Q F F++ +P
Sbjct: 220 LQNLYRTKSFLFVGCGETLRDQIFQALFLYSVP 252
>gi|157388973 hypothetical protein LOC55007 [Homo sapiens]
Length = 357
Score = 28.1 bits (61), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 114 LSGKYQTSSKLFQNCSELFKTQTFSGDFMHRLP 146
L Y+T S LF C E + Q F F++ +P
Sbjct: 220 LQNLYRTKSFLFVGCGETLRDQIFQALFLYSVP 252
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 27.7 bits (60), Expect = 5.6
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 90 YNEIYNFKAEEVELYLEKLKEKRGLSGKYQTSSKLFQNCSELFKTQTFSGDFMHRLPL-L 148
+++++NF EE +L+L++L ++ + +T KL +N +L QT + + +L L +
Sbjct: 203 FSKLHNFLVEEEDLFLQRLNKE-----EEETKKKLNENTLKL--NQTIAS--LKKLILEV 253
Query: 149 GEKQEA 154
GEK +A
Sbjct: 254 GEKSQA 259
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 27.7 bits (60), Expect = 5.6
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 90 YNEIYNFKAEEVELYLEKLKEKRGLSGKYQTSSKLFQNCSELFKTQTFSGDFMHRLPL-L 148
+++++NF EE +L+L++L ++ + +T KL +N +L QT + + +L L +
Sbjct: 177 FSKLHNFLVEEEDLFLQRLNKE-----EEETKKKLNENTLKL--NQTIAS--LKKLILEV 227
Query: 149 GEKQEA 154
GEK +A
Sbjct: 228 GEKSQA 233
>gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo
sapiens]
Length = 215
Score = 27.3 bits (59), Expect = 7.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
>gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo
sapiens]
Length = 235
Score = 27.3 bits (59), Expect = 7.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
>gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo
sapiens]
Length = 202
Score = 27.3 bits (59), Expect = 7.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
>gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo
sapiens]
Length = 159
Score = 27.3 bits (59), Expect = 7.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
>gi|52317247 olfactory receptor, family 4, subfamily D, member 9
[Homo sapiens]
Length = 314
Score = 27.3 bits (59), Expect = 7.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 69 FDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLS 115
F P D ++++T+ + S IY + +E++L + KLK + G S
Sbjct: 262 FTALPTDTAISVTFTVISPLLNPIIYTLRNQEMKLAMRKLKRRLGQS 308
>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
sapiens]
Length = 3710
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 84 LKSADCYNEIYNFKAEEVELYLEKLKEKRG 113
++S D N + NF+ +EV + L K EK+G
Sbjct: 1374 IRSVDIINMLLNFEIKEVVVTLMKKSEKKG 1403
>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
sapiens]
Length = 3585
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 84 LKSADCYNEIYNFKAEEVELYLEKLKEKRG 113
++S D N + NF+ +EV + L K EK+G
Sbjct: 1374 IRSVDIINMLLNFEIKEVVVTLMKKSEKKG 1403
>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
sapiens]
Length = 3628
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 84 LKSADCYNEIYNFKAEEVELYLEKLKEKRG 113
++S D N + NF+ +EV + L K EK+G
Sbjct: 1417 IRSVDIINMLLNFEIKEVVVTLMKKSEKKG 1446
>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
sapiens]
Length = 3753
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 84 LKSADCYNEIYNFKAEEVELYLEKLKEKRG 113
++S D N + NF+ +EV + L K EK+G
Sbjct: 1417 IRSVDIINMLLNFEIKEVVVTLMKKSEKKG 1446
>gi|13569938 sialyltransferase 7E [Homo sapiens]
Length = 336
Score = 26.9 bits (58), Expect = 9.6
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 90 YNEIYNFKAEEVELYLEKLKEKRGLSGKYQTSSKLFQNCSELFKTQTFSGDF 141
Y+ F +E +YL + ++G ++ T ++F+N + F F D+
Sbjct: 269 YHYYEPFGPDECTMYLSHERGRKGSHHRFITEKRVFKNWARTFNIHFFQPDW 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,930,881
Number of Sequences: 37866
Number of extensions: 303261
Number of successful extensions: 818
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 35
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.