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Search of human proteins with 28872736
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo
sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo ... 415 e-116
gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo ... 360 e-100
gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo ... 317 4e-87
gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo ... 315 2e-86
gi|115298645 mitogen-activated protein kinase kinase kinase 14 [... 32 0.28
gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2... 32 0.28
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 32 0.37
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 32 0.37
gi|40806209 WW domain containing E3 ubiquitin protein ligase 2 i... 32 0.48
gi|40806207 WW domain containing E3 ubiquitin protein ligase 2 i... 32 0.48
gi|156564386 deltex 2 isoform b [Homo sapiens] 32 0.48
gi|156564384 deltex 2 isoform a [Homo sapiens] 32 0.48
gi|156564382 deltex 2 isoform a [Homo sapiens] 32 0.48
gi|156564380 deltex 2 isoform a [Homo sapiens] 32 0.48
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 30 1.8
gi|73486661 amiloride binding protein 1 precursor [Homo sapiens] 29 2.4
gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens] 29 2.4
gi|239758051 PREDICTED: hypothetical protein [Homo sapiens] 29 3.1
gi|32261332 seizure related 6 homolog (mouse)-like precursor [Ho... 29 3.1
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens] 28 5.3
gi|239750031 PREDICTED: hypothetical protein [Homo sapiens] 28 5.3
gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo ... 28 5.3
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 27 9.0
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 27 9.0
gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens] 27 9.0
gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens] 27 9.0
>gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo
sapiens]
Length = 202
Score = 415 bits (1066), Expect = e-116
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQ 180
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQ
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQ 180
Query: 181 SSDLPWGNTHYRPEPLSSTTWL 202
SSDLPWGNTHYRPEPLSSTTWL
Sbjct: 181 SSDLPWGNTHYRPEPLSSTTWL 202
>gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo
sapiens]
Length = 215
Score = 360 bits (925), Expect = e-100
Identities = 180/198 (90%), Positives = 184/198 (92%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQ 180
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDP +
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPPDLP 180
Query: 181 SSDLPWGNTHYRPEPLSS 198
+ D + P P+ S
Sbjct: 181 TVDPISSSLTSAPAPMLS 198
>gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo
sapiens]
Length = 235
Score = 317 bits (812), Expect = 4e-87
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
>gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo
sapiens]
Length = 159
Score = 315 bits (806), Expect = 2e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
>gi|115298645 mitogen-activated protein kinase kinase kinase 14
[Homo sapiens]
Length = 947
Score = 32.3 bits (72), Expect = 0.28
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 69 PCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQG 128
P C P + A+ + +R+E IH S E+ V + Q G ++ P+ + +
Sbjct: 620 PSCAP-LTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQVG----GLKSPWRGEYKEPR- 673
Query: 129 QWHPFTNKPTTFRGL--RPREVQDPAPAQDTGLRLSAVAPQILLPGWPDP 176
HP N+ + L +PRE+ AP + AP++ P P+P
Sbjct: 674 --HPPPNQANYHQTLHAQPRELSPRAPGPRPAEETTGRAPKLQPPLPPEP 721
>gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2,
8kDa [Homo sapiens]
Length = 99
Score = 32.3 bits (72), Expect = 0.28
Identities = 14/79 (17%), Positives = 38/79 (48%)
Query: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
L+ + + + S+G R+F+E+ ++ + NP + I + P++ A Y G
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 86 EESIHCKSVEEISTLVQKL 104
++ S ++++ ++ +
Sbjct: 76 NVPLNNFSADQVTRALENV 94
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 32.0 bits (71), Expect = 0.37
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 143 LRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQS 181
L P QDPAP+Q L + L P WP P+ ++
Sbjct: 335 LEPAPEQDPAPSQTLELEPAPAPVPSLQPSWPSPVVAEN 373
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 32.0 bits (71), Expect = 0.37
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 143 LRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQS 181
L P QDPAP+Q L + L P WP P+ ++
Sbjct: 280 LEPAPEQDPAPSQTLELEPAPAPVPSLQPSWPSPVVAEN 318
>gi|40806209 WW domain containing E3 ubiquitin protein ligase 2
isoform 3 [Homo sapiens]
Length = 335
Score = 31.6 bits (70), Expect = 0.48
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 24/121 (19%)
Query: 81 NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQWHPFTNKPTTF 140
NG V +E EE S + + L V T NP+ P T
Sbjct: 232 NGTVNDEPTTATDPEEPSVVGVTSPPAAPLSV--------TPNPNTTSLPAPAT------ 277
Query: 141 RGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQSSDLPWGNTHYRPEPLSSTT 200
P E ++P+ + L +A AP L GW + +LP G +Y +TT
Sbjct: 278 ----PAEGEEPSTSGTQQLPAAAQAPDALPAGW------EQRELPNGRVYYVDHNTKTTT 327
Query: 201 W 201
W
Sbjct: 328 W 328
>gi|40806207 WW domain containing E3 ubiquitin protein ligase 2
isoform 1 [Homo sapiens]
Length = 870
Score = 31.6 bits (70), Expect = 0.48
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 24/121 (19%)
Query: 81 NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQWHPFTNKPTTF 140
NG V +E EE S + + L V T NP+ P T
Sbjct: 232 NGTVNDEPTTATDPEEPSVVGVTSPPAAPLSV--------TPNPNTTSLPAPAT------ 277
Query: 141 RGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQSSDLPWGNTHYRPEPLSSTT 200
P E ++P+ + L +A AP L GW + +LP G +Y +TT
Sbjct: 278 ----PAEGEEPSTSGTQQLPAAAQAPDALPAGW------EQRELPNGRVYYVDHNTKTTT 327
Query: 201 W 201
W
Sbjct: 328 W 328
>gi|156564386 deltex 2 isoform b [Homo sapiens]
Length = 575
Score = 31.6 bits (70), Expect = 0.48
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 407 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 465
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQDTG-LRLSAVA--PQILLPGWPDPISV 179
QG HP KP T RG PR+ P AQ L L VA +++ +
Sbjct: 466 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTG 524
Query: 180 QSSDLPWGNTHYRPE 194
++ + W H++ E
Sbjct: 525 ETDTVVWNEIHHKTE 539
>gi|156564384 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 31.6 bits (70), Expect = 0.48
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQDTG-LRLSAVA--PQILLPGWPDPISV 179
QG HP KP T RG PR+ P AQ L L VA +++ +
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTG 571
Query: 180 QSSDLPWGNTHYRPE 194
++ + W H++ E
Sbjct: 572 ETDTVVWNEIHHKTE 586
>gi|156564382 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 31.6 bits (70), Expect = 0.48
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQDTG-LRLSAVA--PQILLPGWPDPISV 179
QG HP KP T RG PR+ P AQ L L VA +++ +
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTG 571
Query: 180 QSSDLPWGNTHYRPE 194
++ + W H++ E
Sbjct: 572 ETDTVVWNEIHHKTE 586
>gi|156564380 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 31.6 bits (70), Expect = 0.48
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQDTG-LRLSAVA--PQILLPGWPDPISV 179
QG HP KP T RG PR+ P AQ L L VA +++ +
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTG 571
Query: 180 QSSDLPWGNTHYRPE 194
++ + W H++ E
Sbjct: 572 ETDTVVWNEIHHKTE 586
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 29.6 bits (65), Expect = 1.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 171 PGWPDPISVQSSDLPWGNTHYRPEPLSST 199
P W +PI+ SS WG++ P+ LS +
Sbjct: 1089 PSWGEPIAAASSTSTWGSSSVGPQALSKS 1117
>gi|73486661 amiloride binding protein 1 precursor [Homo sapiens]
Length = 751
Score = 29.3 bits (64), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 159 LRLSAVAPQILLPGWPDPISVQSSDLPWGNTHYRPEPLSSTT 200
L++ ++A Q+L PGW + ++ + P T YR L S++
Sbjct: 595 LQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSS 636
>gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 8/37 (21%)
Query: 32 SVSRDGASSRGAREFVE----REVIDFARRNPGVVIY 64
++SR+GASSR ++F+E +V+D+ P +VIY
Sbjct: 336 NISRNGASSRNLKKFIESLSRNKVLDY----PAIVIY 368
>gi|239758051 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 28.9 bits (63), Expect = 3.1
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 127 QGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAPQILLPGWPDPISVQSSDL-- 184
+G+ P T +P RG R + PAP D G PQ P P Q +D
Sbjct: 27 KGEPSPCTGRPEQ-RGRRKSSLAPPAPTPDAG-------PQTSKDLEPPPHGCQEADRGG 78
Query: 185 PWGNTHYRP 193
WG T RP
Sbjct: 79 SWGATTSRP 87
>gi|32261332 seizure related 6 homolog (mouse)-like precursor [Homo
sapiens]
Length = 1024
Score = 28.9 bits (63), Expect = 3.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 158 GLRLSAVAPQILLPGWPDPISVQSSDLPW 186
G LSAVA +L P WP+P V+ D W
Sbjct: 629 GGELSAVAGVVLSPNWPEPY-VEGEDCIW 656
>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 516
Score = 28.1 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 166 PQILLPGWPDPISVQSSDLPWGNTH 190
PQ L P W DP +++S WG H
Sbjct: 369 PQALCPTWGDPWWLRASRHSWGRNH 393
>gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 28.1 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 166 PQILLPGWPDPISVQSSDLPWGNTH 190
PQ L P W DP +++S WG H
Sbjct: 209 PQALCPTWGDPWWLRASRHSWGRNH 233
>gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo
sapiens]
Length = 356
Score = 28.1 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 166 PQILLPGWPDPISVQSSDLPWGNTH 190
PQ L P W DP +++S WG H
Sbjct: 209 PQALCPTWGDPWWLRASRHSWGRNH 233
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis
critical region 1 [Homo sapiens]
Length = 1400
Score = 27.3 bits (59), Expect = 9.0
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 124 PSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDTGLRLSAVAP 166
P+ GQ PF N+ TT P E + P + LS P
Sbjct: 741 PTENGQRTPFANEKTTSSSAEPTEHGERTPLANENTTLSPAGP 783
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 27.3 bits (59), Expect = 9.0
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 13 SVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARR---NPGVVIYVNSRP 69
S H GL Y L+ DG+S A V+ R N + Y+
Sbjct: 581 SAEHAGLSEYGCMLEIKDVRTFPDGSSVVDAIGISRFRVLSHRHRDGYNTADIEYLEDEK 640
Query: 70 CCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQ--SGLDVIRIRKPFHTDNPS 125
P EY A +S+H +SV ++L ++ +Q S V+ R+P NPS
Sbjct: 641 VEGP----EYEELAALHDSVHQQSVSWFASLQDRMKEQILSHFGVMPDREPEPQSNPS 694
>gi|160333222 transmembrane protein 87A isoform 2 [Homo sapiens]
Length = 181
Score = 27.3 bits (59), Expect = 9.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
>gi|31377765 transmembrane protein 87A isoform 1 [Homo sapiens]
Length = 555
Score = 27.3 bits (59), Expect = 9.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 57 RNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGL 110
RN + + + PC + + YL A I+ EE+ ++KL ++ GL
Sbjct: 61 RNTTIFLKFDGEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGL 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,262,205
Number of Sequences: 37866
Number of extensions: 391753
Number of successful extensions: 1005
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 30
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.