Guide to the Human Genome
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Name: FKBP1B Sequence: fasta or formatted (80aa) NCBI GI: 17149839
Description:

FK506 binding protein 1B, 12.6 kDa isoform b

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt prot [108aa] FK506 binding protein 1B, 12.6 kDa isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          2           2
 C cysteine            3.8          3           1
 D aspartate           3.8          3           1
 E glutamate           6.2          5           2
 F phenylalanine       6.2          5           1
 G glycine            12.5         10           1
 H histidine           2.5          2           1
 I isoleucine          6.2          5           1
 K lysine             10.0          8           2
 L leucine             5.0          4           1
 M methionine          2.5          2           1
 N asparagine          2.5          2           1
 P proline            10.0          8           1
 Q glutamine           5.0          4           1
 R arginine            5.0          4           1
 S serine              5.0          4           2
 T threonine           5.0          4           1
 V valine              5.0          4           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FK506 binding protein 1B, 12.6 kDa isoform b 
FKBP1B                0.782   FK506 binding protein 1B, 12.6 kDa isoform a 
FKBP1A                0.694   FK506 binding protein 1A, 12kDa 
FKBP1A                0.694   FK506 binding protein 1A, 12kDa 
FKBP5                 0.272   FK506 binding protein 5 isoform 2 
FKBP5                 0.272   FK506 binding protein 5 isoform 1 
FKBP5                 0.272   FK506 binding protein 5 isoform 1 
FKBP5                 0.272   FK506 binding protein 5 isoform 1 
FKBP4                 0.197   FK506 binding protein 52 
FKBP2                 0.190   FK506 binding protein 2, 13kDa precursor 
FKBP2                 0.190   FK506 binding protein 2, 13kDa precursor 
FKBP2                 0.190   FK506 binding protein 2, 13kDa precursor 
FKBP3                 0.143   FK506 binding protein 3, 25kDa 
FKBP9                 0.102   FK506 binding protein 9 
FKBP10                0.102   FK506 binding protein 10 
FKBP15                0.082   FK506 binding protein 15, 133kDa 
FKBP11                0.075   FK506 binding protein 11 isoform 3 precursor 
FKBP11                0.075   FK506 binding protein 11 isoform 1 precursor 
PLEKHA7               0.020   pleckstrin homology domain containing, family A mem...
FKBP8                 0.014   FK506-binding protein 8 
SMARCA1               0.014   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.014   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.007   SWI/SNF-related matrix-associated actin-dependent re...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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