Guide to the Human Genome
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Name: NCOA7 Sequence: fasta or formatted (931aa) NCBI GI: 170932526
Description:

nuclear receptor coactivator 7 isoform 2

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [942aa] nuclear receptor coactivator 7 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         44           2
 C cysteine            1.1         10           1
 D aspartate           6.6         61           3
 E glutamate           9.6         89           3
 F phenylalanine       3.5         33           2
 G glycine             5.4         50           5
 H histidine           2.0         19           1
 I isoleucine          4.4         41           2
 K lysine             10.0         93           4
 L leucine             8.4         78           2
 M methionine          2.1         20           1
 N asparagine          4.6         43           2
 P proline             5.3         49           2
 Q glutamine           3.4         32           2
 R arginine            3.4         32           2
 S serine              9.6         89           4
 T threonine           6.1         57           2
 V valine              5.9         55           3
 W tryptophan          1.1         10           1
 Y tyrosine            2.8         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor coactivator 7 isoform 2 
NCOA7                 0.996   nuclear receptor coactivator 7 isoform 1 
OXR1                  0.171   oxidation resistance 1 isoform 2 
OXR1                  0.171   oxidation resistance 1 isoform 1 
C20orf118             0.090   hypothetical protein LOC140711 
KIAA1609              0.029   hypothetical protein LOC57707 
TBC1D24               0.024   TBC1 domain family, member 24 
WDR87                 0.008   NYD-SP11 protein 
DOPEY1                0.008   dopey family member 1 
EIF5B                 0.008   eukaryotic translation initiation factor 5B 
CNGB1                 0.008   cyclic nucleotide gated channel beta 1 isoform a [H...
NKTR                  0.008   natural killer-tumor recognition sequence 
LOC100133698          0.007   PREDICTED: hypothetical protein 
DSPP                  0.007   dentin sialophosphoprotein preproprotein 
MAP1B                 0.007   microtubule-associated protein 1B 
SLK                   0.007   serine/threonine kinase 2 
MAP2                  0.007   microtubule-associated protein 2 isoform 1 
CHD8                  0.007   chromodomain helicase DNA binding protein 8 
CCDC14                0.007   coiled-coil domain containing 14 
PPL                   0.007   periplakin 
TRIM6                 0.006   tripartite motif-containing 6 isoform 2 
TRIM6                 0.006   tripartite motif-containing 6 isoform 1 
NEFH                  0.006   neurofilament, heavy polypeptide 200kDa 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 1 
AKAP2                 0.006   A kinase (PRKA) anchor protein 2 isoform 2 
AKAP2                 0.006   A kinase (PRKA) anchor protein 2 isoform 1 
TRIM6-TRIM34          0.006   tripartite motif-containing 6 and tripartite motif-c...
TRPM6                 0.006   transient receptor potential cation channel, subfami...
SCN8A                 0.006   sodium channel, voltage gated, type VIII, alpha [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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