Guide to the Human Genome
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Name: LOC730631 Sequence: fasta or formatted (211aa) NCBI GI: 169218000
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {211aa} PREDICTED: hypothetical protein
alt mRNA {211aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         16           3
 C cysteine            3.3          7           1
 D aspartate           1.4          3           1
 E glutamate           5.2         11           1
 F phenylalanine       4.3          9           1
 G glycine             6.6         14           1
 H histidine           1.9          4           1
 I isoleucine          2.8          6           1
 K lysine              2.8          6           1
 L leucine            13.3         28           2
 M methionine          0.9          2           1
 N asparagine          2.4          5           1
 P proline             7.1         15           2
 Q glutamine           3.8          8           2
 R arginine            8.5         18           2
 S serine             11.4         24           3
 T threonine           4.7         10           1
 V valine              5.7         12           1
 W tryptophan          2.8          6           1
 Y tyrosine            3.3          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730631             1.000   PREDICTED: hypothetical protein 
LOC100132909          1.000   PREDICTED: hypothetical protein 
LOC100132909          1.000   PREDICTED: hypothetical protein 
LOC730631             1.000   PREDICTED: hypothetical protein 
ALMS1                 0.019   Alstrom syndrome 1 
HBM                   0.015   hemoglobin mu chain 
ZNF800                0.012   zinc finger protein 800 
B3GNT8                0.012   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
IL22RA2               0.010   interleukin 22-binding protein isoform 1 
LRRC41                0.010   MUF1 protein 
ATF5                  0.007   activating transcription factor 5 
MPEG1                 0.007   macrophage expressed gene 1 
CDRT1                 0.007   CMT1A duplicated region transcript 1 
CACNA2D4              0.005   voltage-gated calcium channel alpha(2)delta-4 subun...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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