Guide to the Human Genome
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Search of human proteins with 169213573

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]           301   9e-83
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]           301   9e-83
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]           301   9e-83
gi|62243734 signal transducing adaptor family member 2 isoform 1...    59   1e-09
gi|28212280 hypothetical protein LOC283579 [Homo sapiens]              54   6e-08
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]                     52   1e-07
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]                     52   1e-07
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ...    51   3e-07
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]                     51   3e-07
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]          51   4e-07
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]          51   4e-07
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [...    50   6e-07
gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]          49   2e-06
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi...    48   2e-06
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap...    46   1e-05
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap...    44   3e-05
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ...    44   6e-05
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ...    44   6e-05
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ...    44   6e-05
gi|29029530 sulfotransferase family, cytosolic, 1C, member 1 iso...    43   8e-05
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]               43   1e-04
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H...    42   1e-04
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]        42   2e-04
gi|61744479 solute carrier family 3, member 2 isoform d [Homo sa...    41   3e-04
gi|65506891 solute carrier family 3, member 2 isoform c [Homo sa...    41   3e-04
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]           40   7e-04
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa...    40   7e-04
gi|224494572 hypothetical protein LOC401082 [Homo sapiens]             40   8e-04
gi|61744477 solute carrier family 3, member 2 isoform b [Homo sa...    40   8e-04
gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapi...    39   0.001

>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 142

 Score =  301 bits (772), Expect = 9e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60
           MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT
Sbjct: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60

Query: 61  QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG 120
           QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG
Sbjct: 61  QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG 120

Query: 121 NVILFCLDTAHRGHCDIAGHCT 142
           NVILFCLDTAHRGHCDIAGHCT
Sbjct: 121 NVILFCLDTAHRGHCDIAGHCT 142


>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 142

 Score =  301 bits (772), Expect = 9e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60
           MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT
Sbjct: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60

Query: 61  QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG 120
           QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG
Sbjct: 61  QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG 120

Query: 121 NVILFCLDTAHRGHCDIAGHCT 142
           NVILFCLDTAHRGHCDIAGHCT
Sbjct: 121 NVILFCLDTAHRGHCDIAGHCT 142


>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 142

 Score =  301 bits (772), Expect = 9e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60
           MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT
Sbjct: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60

Query: 61  QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG 120
           QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG
Sbjct: 61  QHAGGVDSHPLTQDMCVIVNVIARPFDKCNCDIYLGLASELFVVSWVQLTVPYHWIQTLG 120

Query: 121 NVILFCLDTAHRGHCDIAGHCT 142
           NVILFCLDTAHRGHCDIAGHCT
Sbjct: 121 NVILFCLDTAHRGHCDIAGHCT 142


>gi|62243734 signal transducing adaptor family member 2 isoform 1
           [Homo sapiens]
          Length = 449

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)

Query: 2   GLYHVGQAGLELLTSSDPPTSASQNAEITGVSH 34
           G +HV QAGLELLTSSDPPTSASQ+A ITGVSH
Sbjct: 361 GFHHVAQAGLELLTSSDPPTSASQSAGITGVSH 393


>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
          Length = 122

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query: 1  MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNL 43
          MG ++  QAGLELL SS+PP SASQ+A ITGVSH A+   H+L
Sbjct: 31 MGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPGEHDL 73


>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 26/33 (78%), Positives = 28/33 (84%)

Query: 5   HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           HV QAGLELL S DPPTSASQ+A ITGVSH A+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVSHWAR 392


>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 26/33 (78%), Positives = 28/33 (84%)

Query: 5   HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           HV QAGLELL S DPPTSASQ+A ITGVSH A+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVSHWAR 392


>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
           sapiens]
          Length = 402

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 25/33 (75%), Positives = 28/33 (84%)

Query: 5   HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           HV QAGLELL S DPPTSASQ+A ITGV+H A+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVTHWAR 392


>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 25/33 (75%), Positives = 28/33 (84%)

Query: 5   HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           HV QAGLELL S DPPTSASQ+A ITGV+H A+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVTHWAR 392


>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
          Length = 606

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           MG +H  QA LELL SSD P SASQ+A ITGV+HRAQ
Sbjct: 77  MGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQ 113


>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
          Length = 629

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query: 1   MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           MG +H  QA LELL SSD P SASQ+A ITGV+HRAQ
Sbjct: 77  MGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQ 113


>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
          [Homo sapiens]
          Length = 759

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 1  MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQR 45
          MG +HVGQAGLELL SSD PTSASQ+A IT +    ++   N Q+
Sbjct: 39 MGFHHVGQAGLELLISSDLPTSASQSAGITDMKLSMKNNIINTQQ 83


>gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]
          Length = 176

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 1  MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
          M  ++V QA LELLTSS+PP SASQ+  ITG SHRA+
Sbjct: 1  MEFHYVAQADLELLTSSNPPASASQSTGITGGSHRAR 37


>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
           sapiens]
          Length = 167

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 24/36 (66%), Positives = 27/36 (75%)

Query: 2   GLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           G  ++ QAGLELL SSD P SASQ+A ITGVSH  Q
Sbjct: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQ 159


>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
          Length = 1079

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 24/36 (66%), Positives = 27/36 (75%)

Query: 2    GLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
            G +HVGQA LELLTS     SASQ+A ITGVSH A+
Sbjct: 1044 GFHHVGQACLELLTSGGLLASASQSAGITGVSHHAR 1079


>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
           sapiens]
          Length = 365

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 21/30 (70%), Positives = 24/30 (80%)

Query: 2   GLYHVGQAGLELLTSSDPPTSASQNAEITG 31
           G + VGQAGL+LLTSSDPP   SQ+A ITG
Sbjct: 113 GFHRVGQAGLQLLTSSDPPALDSQSAGITG 142


>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 8   QAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           QAG++LLT+SD PT ASQ+  ITGVSH AQ
Sbjct: 187 QAGVKLLTASDLPTLASQSVAITGVSHHAQ 216


>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 8   QAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           QAG++LLT+SD PT ASQ+  ITGVSH AQ
Sbjct: 187 QAGVKLLTASDLPTLASQSVAITGVSHHAQ 216


>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 21/30 (70%), Positives = 25/30 (83%)

Query: 8   QAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
           QAG++LLT+SD PT ASQ+  ITGVSH AQ
Sbjct: 187 QAGVKLLTASDLPTLASQSVAITGVSHHAQ 216


>gi|29029530 sulfotransferase family, cytosolic, 1C, member 1
           isoform b [Homo sapiens]
          Length = 307

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 19/29 (65%), Positives = 25/29 (86%)

Query: 2   GLYHVGQAGLELLTSSDPPTSASQNAEIT 30
           G +HV QAGL+LL+SS+PP S SQ+A+IT
Sbjct: 95  GFHHVAQAGLKLLSSSNPPASTSQSAKIT 123


>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
          Length = 586

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)

Query: 5   HVGQAGLELLTSSDPPTSASQNAEITGVSH 34
           HV Q+ LELL SSDPP SASQ+A I GV H
Sbjct: 112 HVTQSDLELLLSSDPPASASQSAGIRGVRH 141


>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
           sapiens]
          Length = 619

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)

Query: 2   GLYHVGQAGLELLTSSDPPTSASQNAEIT 30
           G  HV Q GLELLTS DPPT ASQ+A IT
Sbjct: 311 GFRHVDQDGLELLTSGDPPTLASQSAGIT 339


>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
          Length = 558

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 4   YHVGQAGLELLTSSDPPTSASQNAEITG---VSHRAQSKAHNL 43
           +HV QAGLELLTS D PT ASQ+A IT    +S R Q  +  +
Sbjct: 241 HHVSQAGLELLTSGDLPTLASQSAGITASSVISQRTQQTSSQM 283


>gi|61744479 solute carrier family 3, member 2 isoform d [Homo
          sapiens]
          Length = 599

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 19/26 (73%), Positives = 22/26 (84%)

Query: 6  VGQAGLELLTSSDPPTSASQNAEITG 31
          V QAGL+LL SSDPP  AS+NAE+TG
Sbjct: 44 VTQAGLQLLASSDPPALASKNAEVTG 69


>gi|65506891 solute carrier family 3, member 2 isoform c [Homo
           sapiens]
          Length = 630

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 19/26 (73%), Positives = 22/26 (84%)

Query: 6   VGQAGLELLTSSDPPTSASQNAEITG 31
           V QAGL+LL SSDPP  AS+NAE+TG
Sbjct: 75  VTQAGLQLLASSDPPALASKNAEVTG 100



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 1  MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60
          +G + V Q GLELL S DP  SASQNAE+        ++A      L+L   S PP   +
Sbjct: 39 LGSHCVAQTGLELLASGDPLPSASQNAEMIETGSDCVTQA-----GLQLLASSDPPALAS 93

Query: 61 QHA 63
          ++A
Sbjct: 94 KNA 96


>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
          Length = 858

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 20/29 (68%), Positives = 22/29 (75%)

Query: 6   VGQAGLELLTSSDPPTSASQNAEITGVSH 34
           V QAGLELL SS P   ASQ+A ITG+SH
Sbjct: 701 VAQAGLELLVSSSPSALASQSAGITGMSH 729


>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
           sapiens]
          Length = 661

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 2/35 (5%)

Query: 6   VGQAGLELLTSSDPPTSASQNAEI--TGVSHRAQS 38
           V QAGL+LL SSDPP  AS+NAE+  TG  H +Q+
Sbjct: 75  VTQAGLQLLASSDPPALASKNAEVTETGFHHVSQA 109



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 1  MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNLQRKLRLSHKSSPPCTYT 60
          +G + V Q GLELL S DP  SASQNAE+        ++A      L+L   S PP   +
Sbjct: 39 LGSHCVAQTGLELLASGDPLPSASQNAEMIETGSDCVTQA-----GLQLLASSDPPALAS 93

Query: 61 QHA 63
          ++A
Sbjct: 94 KNA 96



 Score = 37.7 bits (86), Expect = 0.003
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 2   GLYHVGQAGLELLTSSDPPTSASQNAEITG 31
           G +HV QA +E LTS DP  SAS +A ITG
Sbjct: 102 GFHHVSQADIEFLTSIDPTASASGSAGITG 131


>gi|224494572 hypothetical protein LOC401082 [Homo sapiens]
          Length = 95

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 2  GLYHVGQAGLELLTSSDPPTSASQNAEITGVSH 34
          G ++V QAGLELL SS+ PTSA Q A  TG+ H
Sbjct: 16 GSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHH 48


>gi|61744477 solute carrier family 3, member 2 isoform b [Homo
          sapiens]
          Length = 631

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 3/36 (8%)

Query: 6  VGQAGLELLTSSDPPTSASQNAEI---TGVSHRAQS 38
          V QAGL+LL SSDPP  AS+NAE+   TG  H +Q+
Sbjct: 44 VTQAGLQLLASSDPPALASKNAEVTVETGFHHVSQA 79



 Score = 37.7 bits (86), Expect = 0.003
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 2   GLYHVGQAGLELLTSSDPPTSASQNAEITG 31
           G +HV QA +E LTS DP  SAS +A ITG
Sbjct: 72  GFHHVSQADIEFLTSIDPTASASGSAGITG 101


>gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo
           sapiens]
          Length = 276

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 5   HVGQAGLELLTSSDPPTSASQNAEITGVS 33
           H+ Q GL++L S DPP SA Q+A ITGVS
Sbjct: 159 HIAQTGLKVLGSRDPPASAFQSAGITGVS 187


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,720,748
Number of Sequences: 37866
Number of extensions: 214508
Number of successful extensions: 636
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 72
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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