Guide to the Human Genome
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Name: LOC100128142 Sequence: fasta or formatted (378aa) NCBI GI: 169211642
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {378aa} PREDICTED: similar to RIKEN cDNA E130309D14
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         48           4
 C cysteine            1.3          5           1
 D aspartate           2.4          9           1
 E glutamate           7.4         28           2
 F phenylalanine       1.6          6           1
 G glycine             6.9         26           3
 H histidine           3.4         13           1
 I isoleucine          0.8          3           1
 K lysine              2.6         10           2
 L leucine            10.8         41           2
 M methionine          1.3          5           1
 N asparagine          0.8          3           1
 P proline             9.5         36           3
 Q glutamine           6.6         25           2
 R arginine           14.0         53           3
 S serine              8.5         32           2
 T threonine           3.4         13           1
 V valine              4.0         15           1
 W tryptophan          1.1          4           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128142          1.000   PREDICTED: similar to RIKEN cDNA E130309D14 
LOC100292447          0.514   PREDICTED: similar to coiled-coil domain containing...
CCDC92                0.097   coiled-coil domain containing 92 
KLF16                 0.040   BTE-binding protein 4 
CROCC                 0.037   ciliary rootlet coiled-coil 
SALL3                 0.033   sal-like 3 
CCDC88B               0.030   coiled-coil domain containing 88 
NACA                  0.030   nascent polypeptide-associated complex alpha subuni...
SAMD1                 0.027   sterile alpha motif domain containing 1 
LOC100291634          0.027   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.027   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.027   PREDICTED: hypothetical protein 
MINK1                 0.027   misshapen/NIK-related kinase isoform 4 
SPEG                  0.027   SPEG complex locus 
ZNF716                0.026   PREDICTED: zinc finger protein 716 
MYH7B                 0.026   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
DNM1                  0.026   dynamin 1 isoform 1 
TAOK2                 0.026   TAO kinase 2 isoform 2 
COL6A2                0.026   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.026   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.026   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
MYH8                  0.026   myosin, heavy chain 8, skeletal muscle, perinatal [...
LOC100131251          0.026   PREDICTED: hypothetical protein 
LOC100131102          0.026   PREDICTED: hypothetical protein 
LOC100131251          0.026   PREDICTED: hypothetical protein 
LOC100131102          0.026   PREDICTED: hypothetical protein 
MAPT                  0.025   microtubule-associated protein tau isoform 6 
LOC100130274          0.025   coiled-coil domain containing 121-like 
LOC402160             0.025   PREDICTED: similar to hCG18094 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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