Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130846 Sequence: fasta or formatted (377aa) NCBI GI: 169191966
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {377aa} PREDICTED: hypothetical protein
alt mRNA {377aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         21           2
 C cysteine            4.8         18           1
 D aspartate           6.6         25           2
 E glutamate           5.6         21           2
 F phenylalanine       5.0         19           1
 G glycine             5.8         22           2
 H histidine           3.2         12           1
 I isoleucine          4.8         18           1
 K lysine              2.7         10           1
 L leucine             9.0         34           2
 M methionine          2.7         10           2
 N asparagine          4.0         15           2
 P proline             2.9         11           2
 Q glutamine           6.1         23           2
 R arginine            6.1         23           2
 S serine              9.5         36           3
 T threonine           4.5         17           1
 V valine              6.1         23           2
 W tryptophan          1.6          6           1
 Y tyrosine            3.4         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130846          1.000   PREDICTED: hypothetical protein 
LOC100130846          1.000   PREDICTED: hypothetical protein 
C10orf112             0.057   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.057   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.055   PREDICTED: chromosome 10 open reading frame 112 [Ho...
MAMDC4                0.051   apical early endosomal glycoprotein precursor [Homo...
MDGA2                 0.038   MAM domain containing 1 isoform 1 
MDGA2                 0.038   MAM domain containing 1 isoform 2 
MAMDC2                0.037   MAM domain containing 2 
MDGA1                 0.034   MAM domain containing glycosylphosphatidylinositol a...
NRP1                  0.025   neuropilin 1 isoform a 
PRSS7                 0.017   enterokinase precursor 
MARS                  0.008   methionyl-tRNA synthetase 
MEP1B                 0.007   meprin A beta 
CROP                  0.005   cisplatin resistance-associated overexpressed protei...
CROP                  0.005   cisplatin resistance-associated overexpressed protei...
C6orf167              0.005   hypothetical protein LOC253714 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press