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Search of human proteins with 11128027
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128027 protocadherin gamma subfamily B, 7 isoform 1
precursor [Homo sapiens]
(929 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1837 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1583 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1442 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1306 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1288 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1281 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1270 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1229 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1197 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1060 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1045 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1030 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1019 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 975 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 954 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 936 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 931 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 929 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 920 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 915 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 914 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 911 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 908 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 907 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 900 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 889 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 828 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 824 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 714 0.0
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 694 0.0
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1837 bits (4758), Expect = 0.0
Identities = 929/929 (100%), Positives = 929/929 (100%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
Query: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
Query: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1583 bits (4098), Expect = 0.0
Identities = 805/805 (100%), Positives = 805/805 (100%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 781 LNKDSMLLASILTPSVEADKKILKQ 805
LNKDSMLLASILTPSVEADKKILKQ
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQ 805
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1442 bits (3734), Expect = 0.0
Identities = 730/933 (78%), Positives = 804/933 (86%), Gaps = 7/933 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTL EPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSAR+LRVSAEKLHFSVDA+SGDLLVK+RIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
VVIEDVNDHAPQF K EI+LEI ES S G L+ A DPDI++NS+ Y+++ N YFSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
+ + N DGGKYPEL L+K LDRE Q +H L+LTALDGGDPPRS TA I I V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VFS+D YR+SL E++PPG+ +L+V ATDQDEG+N+EI Y F A +H+FSLD TG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
I Q DFE+VERYT+ +EAKD G LST+CKVI+E++DENDNSPEIIITSLSDQI+E+S
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
PPG+VVALFKTRD D G NGEVRC++ +PFKI+SSSNNYYKLVTD ALDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TI ATDRGKPPLSSS++ITL++ D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
GLNG +SYS++ASDLE +SSYVSVSAQSGVVFAQRAFDHEQLR F LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FD VPR+A+PGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFAD+LQE+LPD SD P SD QAE+QFYLVVALALISVLFLLAVILAIALRLR+S S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
P DCF LC KSGPV PPNYSEGTLPY+YN C+ EFNF + +D
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCI-AHTGTKEFNFLKCSVPLHSNEDM 779
Query: 781 LNKDSMLLASILTP----SVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 836
+ S+ +++ P + + + L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 780 V--CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 837
Query: 837 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 896
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 838 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 897
Query: 897 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1306 bits (3380), Expect = 0.0
Identities = 674/929 (72%), Positives = 754/929 (81%), Gaps = 6/929 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
V IED+NDH P+F ++ L+ISES G ILE AED DI +NSL KY+LS N FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
+ K+ DG KYPEL L+KTLDRE QS H LVLTALDGG PP SGT ++RI V DANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VF++DVYRVSLRE+VPPGT++L+V ATDQDEGINSEITYSF+ + +FSL+ +G
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGE 296
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
I TQ+ LDFEE + Y++ +E +D G L +C V + + DENDNSPE+ SL + I+E++
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
PG ++AL K DQDSGENGEV C L VPFKI SSS N YKLVTD LDREQTPEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TI ATDRGKPPLSSS ++ LHI DVNDNAPVF Q++YLV VPENN PGASIAQV ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
GLNG+VSYS++ASDLE L+SYVS+SAQSGVVFAQRAFD+EQLRTFELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFLLAVILA+ALRLR+S S
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
P A CF+ LC KSGPV PPNYS+GTLPY+YN CV EFNF + + QD
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
L DS L S E+ + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 776 LCGDSSGALFPLCNSSESTSH-PELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
Query: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
Query: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1288 bits (3333), Expect = 0.0
Identities = 658/917 (71%), Positives = 742/917 (80%), Gaps = 2/917 (0%)
Query: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ AR+LRVSAEK +
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
F+V+ +SGDLLV DRIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F+
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
+ +INL+I ES G L+ A D D+ NSL +Y L+ NEYF L EK PDG KYPEL
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
+L+ +LDRE S H LVLTA+DGGDPP+SGT QIRI V DANDNPPVFSQDVYRV+LRED
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
VPPG +L+V ATD+DEGIN+EITYSF V ++ +H F+L+ TG I T+ LDFE
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
YT++IEAKD G L+ C + VE++D+ND +PE+I+TS+S + EDSPPG V+AL KTRD+
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
DSGENGEV C + F + SSS NYYKLVTD ALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
S +TLHI+DVNDNAPVF Q++Y+VHV ENN PGASIAQ+SASDPD G +G+VSYS++AS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
DL+ R + SYVSVSAQSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
SD PSD QA++QFYLVVALALISVLF LAVILAI+LRLR S A DCF+ L SK
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNL--NKDSMLLASIL 792
GP PNYSEGTLPY+YN CV EFNF QD + N +
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
Query: 793 TPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 852
V + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 795 AAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 854
Query: 853 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 912
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 855 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 914
Query: 913 PAGGNGNKKKSGKKEKK 929
PAGGNGNKKKSGKKEKK
Sbjct: 915 PAGGNGNKKKSGKKEKK 931
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1281 bits (3315), Expect = 0.0
Identities = 660/929 (71%), Positives = 743/929 (79%), Gaps = 6/929 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
V IED+NDH P+F ++ L+ISES G IL SA D DI N+L YQLSP+++FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
+ K+ DG KYPE+VL+ LDRE Q ++HL LTALD G PP S TAQI +LV DANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VFSQDVYRVSL E+V PGT++L+V ATDQDEG+N+EIT+SF + Q F L+ TG
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
I LDFEEV+ Y+I +EA+D G + +C V VEV+DENDN+PE+I SL + IMED+
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
G +AL K RD+DS NGEV C L VPFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
T+ ATDRGKPPLSSS +ITLHI DVNDNAPVF QS+Y+VHV ENN PGASI+QV ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
G NG+VSY ++ASDLE R LSSYVS+SA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
ALSANVSLRVLV DRNDNAPRVLYPALGPDGSALFD VP AA+PGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+VRQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFL+A+ILAIALRLR+S S
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
P + CF+ LC KS V PPNYSEGTLPY+YN CV EFNF + + QD
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
L DS + L P + + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 778 LCGDS---SGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
Query: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
Query: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1270 bits (3287), Expect = 0.0
Identities = 653/917 (71%), Positives = 740/917 (80%), Gaps = 4/917 (0%)
Query: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
QVLFP LL LF + + IRY+IPEELA GS VG LAKDLGLSV ++ R+LRVSAE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
F+V +SGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
I+LEI ES G+ L+SA+D D+ NSL Y ++PN+YFSL K++PDG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
+L+K LDRE QS+H L+LTA+DGGDPP SGT I I V DANDN PVFSQ+VYRVSL+E+
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
VP GTS+LRV ATDQDEGIN+EITY+F + + +F+L+ TG+I T LDFEE R
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLN-SPISTSLFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Y +++EAKD G + C V +E+VDENDN+PE+ S S+QI EDS G V+AL K RD+
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
DSG+NG V C VPFK+ S+S NYYKLV AL+REQT +YNVTI ATD+GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
+ITLHI+D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD G NGRVSYS++AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
DLE R L SYVSVS QSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
SD P PSD Q E+QFYLVVALALISVLFLLAVILAIALRLR+S S CF++ LCSK
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNLNKDSMLL--ASIL 792
SGP PPN+SEGTLPY+YN C+ EFN QD L D ++ AS
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
Query: 793 TPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 852
+ D + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 850
Query: 853 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 912
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 851 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 910
Query: 913 PAGGNGNKKKSGKKEKK 929
PAGGNGNKKKSGKKEKK
Sbjct: 911 PAGGNGNKKKSGKKEKK 927
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1229 bits (3180), Expect = 0.0
Identities = 629/929 (67%), Positives = 722/929 (77%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG S R AG R++LF LL L L EPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R LRV AEK F+V ++G+LLV DRIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
V+I+D+ND+ P F ++ LEISE G LESA+DPD+ +NSL +Y LSP+ +FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
++K+N DG +YPELVL+ LDRE Q HHLVLTA+DGG+P RS T QIR++V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VF+QD+YRV++ E++P G+S+L+V A D DEGIN+EI Y+F + + + +F LD TG
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
+ T LDFEE + YTI +EAKD G + CKV +++ DENDN+PEI + S S I ED+
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
G VAL KT D DSG NGE+ C L PFKI + N Y+LVTD ALDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TI ATD+G PPLSSSKTITLHI DVNDN PVF Q++Y VHV ENN PGASIA V ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
G NG VSY ++ASDLE R LSSYVSVSA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFD VPR+A+PGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYH+VQASEPGLFSLGLRTGEVR R LGD+++ RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HL+FADSLQE+ PD SD PTPSD QAE+QF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
P F+ +C K+ P P YSE TLPY+YN C N EF F A QD
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
L ++ S P + ++ L++QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 781 LCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
Query: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
Query: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1197 bits (3096), Expect = 0.0
Identities = 602/767 (78%), Positives = 666/767 (86%), Gaps = 1/767 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MGGSCAQRRRAGPRQVLFPLLLPLFYPTL EPIRYSIPEELAKGSVVGNLAKDLGLSVLD
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
VSAR+LRVSAEKLHFSVDA+SGDLLVK+RIDREQICKERRRCELQLEAVVENPLNIFHVI
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
VVIEDVNDHAPQF K EI+LEI ES S G L+ A DPDI++NS+ Y+++ N YFSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
+ + N DGGKYPEL L+K LDRE Q +H L+LTALDGGDPPRS TA I I V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VFS+D YR+SL E++PPG+ +L+V ATDQDEG+N+EI Y F A +H+FSLD TG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
I Q DFE+VERYT+ +EAKD G LST+CKVI+E++DENDNSPEIIITSLSDQI+E+S
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
PPG+VVALFKTRD D G NGEVRC++ +PFKI+SSSNNYYKLVTD ALDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TI ATDRGKPPLSSS++ITL++ D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
GLNG +SYS++ASDLE +SSYVSVSAQSGVVFAQRAFDHEQLR F LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FD VPR+A+PGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFAD+LQE+LPD SD P SD QAE+QFYLVVALALISVLFLLAVILAIALRLR+S S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNF 767
P DCF LC KSGPV PPNYSEGTLPY+YN C+ EFNF
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCI-AHTGTKEFNF 766
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1060 bits (2741), Expect = 0.0
Identities = 547/785 (69%), Positives = 625/785 (79%), Gaps = 5/785 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
V IED+NDH P+F ++ L+ISES G ILE AED DI +NSL KY+LS N FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
+ K+ DG KYPEL L+KTLDRE QS H LVLTALDGG PP SGT ++RI V DANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VF++DVYRVSLRE+VPPGT++L+V ATDQDEGINSEITYSF+ + +FSL+ +G
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGE 296
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
I TQ+ LDFEE + Y++ +E +D G L +C V + + DENDNSPE+ SL + I+E++
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
PG ++AL K DQDSGENGEV C L VPFKI SSS N YKLVTD LDREQTPEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TI ATDRGKPPLSSS ++ LHI DVNDNAPVF Q++YLV VPENN PGASIAQV ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
GLNG+VSYS++ASDLE L+SYVS+SAQSGVVFAQRAFD+EQLRTFELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFLLAVILA+ALRLR+S S
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
P A CF+ LC KSGPV PPNYS+GTLPY+YN CV EFNF + + QD
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 LNKDS 785
L DS
Sbjct: 776 LCGDS 780
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1045 bits (2702), Expect = 0.0
Identities = 532/765 (69%), Positives = 612/765 (80%)
Query: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
QVL P LL LF L IRYSIPEELAK SVVGNLAKDLGLSV D+ AR+LRVSAEK +
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
F+V+ +SGDLLV DRIDREQIC ++ C L + V ENPLNIF++ V+++D+ND+ P F+
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
+ +INL+I ES G L+ A D D+ NSL +Y L+ NEYF L EK PDG KYPEL
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
+L+ +LDRE S H LVLTA+DGGDPP+SGT QIRI V DANDNPPVFSQDVYRV+LRED
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
VPPG +L+V ATD+DEGIN+EITYSF V ++ +H F+L+ TG I T+ LDFE
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
YT++IEAKD G L+ C + VE++D+ND +PE+I+TS+S + EDSPPG V+AL KTRD+
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
DSGENGEV C + F + SSS NYYKLVTD ALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
S +TLHI+DVNDNAPVF Q++Y+VHV ENN PGASIAQ+SASDPD G +G+VSYS++AS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
DL+ R + SYVSVSAQSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
SD PSD QA++QFYLVVALALISVLF LAVILAI+LRLR S A DCF+ L SK
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQD 779
GP PNYSEGTLPY+YN CV EFNF QD
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQD 779
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1030 bits (2662), Expect = 0.0
Identities = 533/785 (67%), Positives = 613/785 (78%), Gaps = 3/785 (0%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
V IED+NDH P+F ++ L+ISES G IL SA D DI N+L YQLSP+++FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
+ K+ DG KYPE+VL+ LDRE Q ++HL LTALD G PP S TAQI +LV DANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VFSQDVYRVSL E+V PGT++L+V ATDQDEG+N+EIT+SF + Q F L+ TG
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
I LDFEEV+ Y+I +EA+D G + +C V VEV+DENDN+PE+I SL + IMED+
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
G +AL K RD+DS NGEV C L VPFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
T+ ATDRGKPPLSSS +ITLHI DVNDNAPVF QS+Y+VHV ENN PGASI+QV ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
G NG+VSY ++ASDLE R LSSYVS+SA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
ALSANVSLRVLV DRNDNAPRVLYPALGPDGSALFD VP AA+PGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+VRQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFL+A+ILAIALRLR+S S
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
P + CF+ LC KS V PPNYSEGTLPY+YN CV EFNF + + QD
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 LNKDS 785
L DS
Sbjct: 778 LCGDS 782
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1019 bits (2636), Expect = 0.0
Identities = 526/774 (67%), Positives = 611/774 (78%), Gaps = 2/774 (0%)
Query: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
QVLFP LL LF + + IRY+IPEELA GS VG LAKDLGLSV ++ R+LRVSAE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
F+V +SGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
I+LEI ES G+ L+SA+D D+ NSL Y ++PN+YFSL K++PDG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
+L+K LDRE QS+H L+LTA+DGGDPP SGT I I V DANDN PVFSQ+VYRVSL+E+
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
VP GTS+LRV ATDQDEGIN+EITY+F + + +F+L+ TG+I T LDFEE R
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLN-SPISTSLFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Y +++EAKD G + C V +E+VDENDN+PE+ S S+QI EDS G V+AL K RD+
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
DSG+NG V C VPFK+ S+S NYYKLV AL+REQT +YNVTI ATD+GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
+ITLHI+D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD G NGRVSYS++AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
DLE R L SYVSVS QSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
SD P PSD Q E+QFYLVVALALISVLFLLAVILAIALRLR+S S CF++ LCSK
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNLNKDSMLL 788
SGP PPN+SEGTLPY+YN C+ EFN QD L D ++
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMV 784
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 975 bits (2520), Expect = 0.0
Identities = 505/805 (62%), Positives = 598/805 (74%)
Query: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
MG S R AG R++LF LL L L EPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
+ R LRV AEK F+V ++G+LLV DRIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
V+I+D+ND+ P F ++ LEISE G LESA+DPD+ +NSL +Y LSP+ +FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
++K+N DG +YPELVL+ LDRE Q HHLVLTA+DGG+P RS T QIR++V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
VF+QD+YRV++ E++P G+S+L+V A D DEGIN+EI Y+F + + + +F LD TG
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
+ T LDFEE + YTI +EAKD G + CKV +++ DENDN+PEI + S S I ED+
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
G VAL KT D DSG NGE+ C L PFKI + N Y+LVTD ALDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
TI ATD+G PPLSSSKTITLHI DVNDN PVF Q++Y VHV ENN PGASIA V ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
G NG VSY ++ASDLE R LSSYVSVSA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFD VPR+A+PGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
NAWLSYH+VQASEPGLFSLGLRTGEVR R LGD+++ RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
HL+FADSLQE+ PD SD PTPSD QAE+QF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
P F+ +C K+ P P YSE TLPY+YN C N EF F A QD
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 LNKDSMLLASILTPSVEADKKILKQ 805
L ++ S P + ++ L++
Sbjct: 781 LCDEASWFESNDNPEMPSNSGNLQK 805
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 954 bits (2467), Expect = 0.0
Identities = 498/925 (53%), Positives = 648/925 (70%), Gaps = 17/925 (1%)
Query: 16 VLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRV--SAEKL 73
VL +LL + T C IRYS+PEEL KGS VG++++DLGL +++ R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 HFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQF 133
F+++ +SG L+ RIDRE++C +C+L L+ ++E+ + I+ V V + D+ND+AP F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 RKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPE 193
R+ E+ ++ISE+ + M L A DPDI NSL Y+LSPN +FSL+ ++ DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRE 253
LVL++ LDRE ++AHHLVLTA DGGDP R+GTA+IR++V+DANDN P F+Q YR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 DVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVE 313
++ GT +L V ATD DEG+N+E+ YSF V DKA VF LD +G I T LD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 RYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRD 373
Y + ++A D S R KV++ V+D NDN+PE+++TSL+ + E+SP G ++AL D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 QDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLS 433
QDS ENG+V C + +PFK+ S NYY LVTD LDREQ P YN+T+ ATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIA 493
+ I+L++ D NDN PVF Q++Y ++PENN G S+ V+A DPD N +++YSL
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVG 553
+ ++ +LSSYVS+++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASE 613
D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 673
PGLFS+GL TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DFSDHPTPSDSQ-AEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLC 732
D +P++S+ +++ YLVVA+A +S +FL VIL +ALRLR+ L
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGLT 733
Query: 733 SKSGP--VGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNLNKDS 785
VG Y++ + D P+ N+ + +Q++ K
Sbjct: 734 GAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADML----VSQESFEKSE 789
Query: 786 MLLASILTPSV-EADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 844
LL S SV D L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM
Sbjct: 790 PLLLS--GDSVFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 847
Query: 845 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 904
LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
Sbjct: 848 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 907
Query: 905 AGKRDGKAPAGGNGNKKKSGKKEKK 929
AGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 908 AGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 936 bits (2419), Expect = 0.0
Identities = 504/942 (53%), Positives = 645/942 (68%), Gaps = 26/942 (2%)
Query: 6 AQRRRAGPRQVLFPLLLPLFYPTL----CEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
A R + G R L LLL +F TL IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 62 SARELR-VSAEKLH-FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHV 119
+ R +R VS K F+V+ +SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 IVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFS 179
V I D+ND+AP F++DE+ +++SE G L +A DPD+ +NSL YQLSPN YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNP 239
L + DG K PELVL+ +LDRE ++AH L+LTALDGGDP R G IR++V+D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTG 299
P+F+Q VYRVS+ E++ GT +L V ATD DEGIN E+ YSF + KA +F LD TG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 NILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMED 359
+ + LDFE+ Y + I+ +D G L T +++ VVD NDN+PEI ITS + I+E+
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYN 419
SPPG V+AL +DQDSGENG+V C + +PFK+ + NYYKL+T LDRE YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 VTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDP 479
+T+ ATD+G PPLS+ + L++ D NDN PVF S+Y ++PENN GASI V+A DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DFGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGS 539
D N V+YSL ++ LSSYVS+++ +GV++A ++FD+EQ R EL + ARD G
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSG 599
P LS+NVSL + V D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 HNAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATAT 659
NAWLSY +++ASEPGLF++G TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT T
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
Query: 660 LHLVFADSLQEVLPDFSDHPTPSDSQ-AEMQFYLVVALALISVLFLLAVILAIALRLRQS 718
L + ADS+ EVL D + ++S+ +++ YLVVA+A +S +FL+ VI+ +ALRL +
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
Query: 719 FSPTAGDCFESVLCS--KSGPVGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNF---F 768
E L S VG Y++ + D P+ N+
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
Query: 769 TSVDHCPATQDNL-NKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQ 827
S + C ++ L +DS ++ P+ QQAPPNTDWRFSQAQRPGTSGSQ
Sbjct: 781 ISQESCEKSEPLLIAEDSAIILGKCDPT-------SNQQAPPNTDWRFSQAQRPGTSGSQ 833
Query: 828 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 887
NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD
Sbjct: 834 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 893
Query: 888 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 931 bits (2405), Expect = 0.0
Identities = 493/933 (52%), Positives = 641/933 (68%), Gaps = 15/933 (1%)
Query: 7 QRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSAREL 66
QR QVL LL + IRYSIPEEL KGS VGN+ KDLGL +++ +
Sbjct: 5 QRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGV 64
Query: 67 R-VSAEKLH-FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIE 124
R VS ++ FS++ ++G L+ RIDRE++C + RC + +VE+ LN++ V V I
Sbjct: 65 RIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIV 124
Query: 125 DVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKD 184
D+ND+ P+F K+E+ ++I E+ + L DPD+ MNSL ++LS N +FS+ +
Sbjct: 125 DINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQS 184
Query: 185 NPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQ 244
G KYPELVL+ TLDRE ++ + LVLTA+DGGDP RS AQI + V+D NDN P+F+Q
Sbjct: 185 EAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQ 244
Query: 245 DVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQ 304
VYRVS+ E++P GT +L V ATDQDEG++ E+TYSF + +K +F L+ TG I T
Sbjct: 245 PVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTS 304
Query: 305 QPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGV 364
LD+E+ Y + +EA+D L R KV++ ++D NDN PE+++TS S I E +PPG
Sbjct: 305 ANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGT 364
Query: 365 VVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAA 424
V+ALF+ D+DSG NG V CS+ R +PF++ S NYY+LVT+ ALDRE+ YN+T+ A
Sbjct: 365 VIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTA 424
Query: 425 TDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLN 484
TD+G PPLS+ I+L++ D NDN P F S+Y V+V ENN GASI V+A DPD N
Sbjct: 425 TDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQN 484
Query: 485 GRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSA 544
+VSYSL L+ LSSYVS+++ +G+++A R+FD+EQLR +L + A D G P LS+
Sbjct: 485 AQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSS 544
Query: 545 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWL 604
NVSL + V D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG NAWL
Sbjct: 545 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWL 604
Query: 605 SYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVF 664
SY +++ASEPGLFS+GL TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT TL +
Sbjct: 605 SYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 664
Query: 665 ADSLQEVLPDF-SDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTA 723
AD + ++L D S P+ + +++ YLVVA+A +S +FL VI+ +ALRL++
Sbjct: 665 ADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRL 724
Query: 724 GDCFESVLCSKSGP--VGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPA 776
L S G VG Y++ + D P+ N+ ++
Sbjct: 725 LQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL----I 780
Query: 777 TQDNLNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 836
Q++ K LL + + + + L QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 781 NQESYEKSEPLLITQDLLETKGEPRQL-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 839
Query: 837 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 896
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 840 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 899
Query: 897 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 900 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 929 bits (2402), Expect = 0.0
Identities = 493/925 (53%), Positives = 633/925 (68%), Gaps = 21/925 (2%)
Query: 20 LLLP-LFYPTLCEP----IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
LLLP + TLCEP IRYS+PEEL KGS VGN+AKDLGL +++ R +R+ +
Sbjct: 13 LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72
Query: 75 --FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQ 132
F+++ +SG L+ RIDRE++C + C + +VEN + I+ V V I D+ND+ P+
Sbjct: 73 QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132
Query: 133 FRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYP 192
FR +E+ ++++E+ + G +L A D D+ +NSL YQLS N +FSL DG KYP
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192
Query: 193 ELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLR 252
ELVL++ LDRE ++ H L+LTALDGGDP SGT IR+ V+DANDN P+F+ Y VS+
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252
Query: 253 EDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEV 312
E++P GT +L + ATD DEGIN ++TYSF +K F LD G I T Q LD+EE
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312
Query: 313 ERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTR 372
Y + + A+D G+L KV+V V D NDN+PE+I+TSL+ I ED PG V+ALF
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372
Query: 373 DQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPL 432
D DSGENGE+ CS+ R +PFK+ S +NYY L+T LDRE+T +YN+T+ D G PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432
Query: 433 SSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLI 492
S+ I L + DVNDN P F Q++Y V ENN G SI V+A DPD G N RV+YSL
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492
Query: 493 ASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLV 552
+ LSSYVS+++ +GV++A R+FD+EQLR +L + A D G+P LS+NVSL + V
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552
Query: 553 GDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQAS 612
D+NDN P +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG NAWLSY +++AS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612
Query: 613 EPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVL 672
EPGLF++GL TGEVR RAL D+D+++Q L+VAV D GQPPLSAT T+ + AD + ++L
Sbjct: 613 EPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDIL 672
Query: 673 PDFSDHPTPSDSQ-AEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVL 731
D TP D + ++ YLVVA+A +S +FL VI+ + LRLR+ S L
Sbjct: 673 ADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRL 732
Query: 732 CS--KSGPVGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNLNKD 784
S VG Y++ + D P+ N+ ++ ++++ K
Sbjct: 733 AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL----LSEESCEKS 788
Query: 785 SMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 844
LL S + + ++++ QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM
Sbjct: 789 EPLLMSDKVDANKEERRV--QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 846
Query: 845 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 904
LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
Sbjct: 847 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 906
Query: 905 AGKRDGKAPAGGNGNKKKSGKKEKK 929
AGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 AGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 920 bits (2378), Expect = 0.0
Identities = 482/928 (51%), Positives = 632/928 (68%), Gaps = 19/928 (2%)
Query: 14 RQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKL 73
R VL LL + + IRYS+PEE KG +VGN++KDL L +++ R +R+ +
Sbjct: 12 RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71
Query: 74 H--FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAP 131
FS++ +SG L+ RIDRE++C + RC + + +VE+ + ++ + + + D+ND AP
Sbjct: 72 TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131
Query: 132 QFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKY 191
+F+ + + ++I+E G L A DPD+ +NSL YQLSPN +FSL + +G
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191
Query: 192 PELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSL 251
PELVL++ LDRE +AHHLVLTA DGG+P RS T +I + V+D NDN PVF+Q +YRV +
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251
Query: 252 REDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEE 311
E+VPPGT +L A+D DEGIN ++ Y F+ + +K +F L+ TG I T + LD+EE
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311
Query: 312 VERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKT 371
Y + I+A+D G L KV++ V D NDN PE+ ITSL + ED+P G V+ LF
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371
Query: 372 RDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPP 431
D+DSG+NG+V CS+ + F + +S +YY+L+T + LDRE+ EYN+T+ ATDRG PP
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431
Query: 432 LSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSL 491
LS+ ITL +TD+NDN P F Q++Y V++PENN G SI V A DPD N RV YSL
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491
Query: 492 IASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVL 551
++ LS+YVS+++ +GV++A +FD+EQ R ++ + A D GSP LS+NVSLR+
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551
Query: 552 VGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQA 611
V D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG NAWLSY + +A
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611
Query: 612 SEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 671
SEPGLFS+GL TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT TL + ADS+ ++
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDI 671
Query: 672 LPDFSDHPTPSDSQA-EMQFYLVVALALISVLFLLAVILAIALRLRQSFSP----TAGDC 726
L D P+D +A ++ YLVVA+A++S +FL VI +ALRLR S D
Sbjct: 672 LADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDG 731
Query: 727 FESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNL 781
V S VG Y+ F + D P+ N+ ++ +Q +
Sbjct: 732 LAGVPTSHF--VGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTL----ISQQSC 785
Query: 782 NKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 841
K+ L S+ + D ++ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 786 EKNEPLCVSVDSKFPIEDTPLV-PQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 844
Query: 842 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 901
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 845 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 904
Query: 902 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 905 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 915 bits (2364), Expect = 0.0
Identities = 481/923 (52%), Positives = 633/923 (68%), Gaps = 19/923 (2%)
Query: 21 LLPLFYPTLCEP----IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH-- 74
LL TLCE IRYS+ EEL KGS VGN+A DLGL +++ R +R+ +
Sbjct: 15 LLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQL 74
Query: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
FS++ QSG L+ +RIDRE++C + C +++ +VE+ L IF V + I+D+ND+AP F
Sbjct: 75 FSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFP 134
Query: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
+E+ ++I E G +++A DPD+ +NSL Y+LSPN+YFSL +G KYPEL
Sbjct: 135 TEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPEL 194
Query: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
VL++ LDRE + H LVL A DGGDP SG I+++V+DANDNPP+F+Q YRVS+ E+
Sbjct: 195 VLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWEN 254
Query: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
VP GT +L V ATD DEG N++++Y + K +F L+ +G + + LD+E+
Sbjct: 255 VPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMF 314
Query: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Y I IEA+D L +R K++V V+D NDN+PEI ITSL+ + E+ G +AL D+
Sbjct: 315 YEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDR 374
Query: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
DSG+NG+V + +PFK+ S + YY+LVT +LDREQ EYN+++ A+D G PPLS+
Sbjct: 375 DSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLST 434
Query: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
ITLH+ D+NDN P F +Y ++PENN GASI V+A DPD N R++Y+L
Sbjct: 435 ETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTED 494
Query: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
L+ LSS+VS+++ +GV++A R+FD+EQ R +L + A D G+P LS+NVSL + V D
Sbjct: 495 TLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLD 554
Query: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG NAWLSY +++ASEP
Sbjct: 555 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEP 614
Query: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
GLFS+GL TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT TL + AD + ++L D
Sbjct: 615 GLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILAD 674
Query: 675 F-SDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCS 733
S P+ + +++ YLVVA+A +S +FL VI+ +ALRLR+ L S
Sbjct: 675 LGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLAS 734
Query: 734 KSGP--VGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNLNKDSM 786
G VG Y++ + D P+ N+ ++ +Q++ K
Sbjct: 735 TPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL----ISQESCEKSEP 790
Query: 787 LLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 846
LL + ++ D +L QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
Sbjct: 791 LLITQDLLEMKGDSNLL-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 849
Query: 847 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 906
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
Sbjct: 850 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 909
Query: 907 KRDGKAPAGGNGNKKKSGKKEKK 929
KRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 KRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 914 bits (2362), Expect = 0.0
Identities = 488/940 (51%), Positives = 638/940 (67%), Gaps = 22/940 (2%)
Query: 6 AQRRRAGPRQ-----VLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
AQR R+ + VL L + + I YSIPEEL KGS VGN++KDLGL+ +
Sbjct: 3 AQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRE 62
Query: 61 VSARELRVSAEKLH--FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFH 118
++ R +R+ + FS++ +SG L+ RIDRE++C + RC + +VE+ + +F
Sbjct: 63 LAERGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFG 122
Query: 119 VIVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYF 178
+ + + D+ND+AP+F+ + ++++I+E+V+ GM L A DPD+ +NSL YQLSPN++F
Sbjct: 123 IEIEVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHF 182
Query: 179 SLVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDN 238
SL + +G KYPELVL+ +LDRE ++ HHLVLTA DGGDP RSGT + + V DANDN
Sbjct: 183 SLRVQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDN 242
Query: 239 PPVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTT 298
PVF+ YRVS+ E++P GT +L V ATD+DEG N E+TYSF + D F L+ T
Sbjct: 243 APVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYT 302
Query: 299 GNILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358
G I + LD+EE Y I I+A+D G+ KV++ V D NDNSPE+ ITSL + E
Sbjct: 303 GEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTE 362
Query: 359 DSPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEY 418
DSP G VVAL D DS +NG+V CS+ +PFK+ S ++YY+LV ALDREQ Y
Sbjct: 363 DSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSY 422
Query: 419 NVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASD 478
N+T+ ATD G PPLS+ L + D+NDN P F Q +Y ++PENN GASI V+A D
Sbjct: 423 NITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALD 482
Query: 479 PDFGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQG 538
PD N ++ YSL ++ LSSY+S+++ +GV++A R+FD+EQ ++ + A D G
Sbjct: 483 PDSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSG 542
Query: 539 SPALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADS 598
P LS+NVSL + V D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DS
Sbjct: 543 DPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDS 602
Query: 599 GHNAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATA 658
G NAWLSY +++ASEPGLF++G TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT
Sbjct: 603 GQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 662
Query: 659 TLHLVFADSLQEVLPDFSDHPTPSDSQ-AEMQFYLVVALALISVLFLLAVILAIALRLRQ 717
TL + ADS+ +VL D +P++S+ +++ YLVVA+A +S +FL VI+ +A RLR+
Sbjct: 663 TLTVAVADSIPQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRR 722
Query: 718 SFSPTAGDCFESVLCSKSGP--VGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTS 770
L SG VG Y++ + D P+ N+ +
Sbjct: 723 WHKSRLLQASGGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADT 782
Query: 771 VDHCPATQDNLNKDSMLLASILTPS-VEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNG 829
+ +Q++ K+ L S+L S + L QAPPNTDWRFSQAQRPGTSGSQNG
Sbjct: 783 L----ISQESCEKNDPL--SLLDDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNG 836
Query: 830 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 889
DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR
Sbjct: 837 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 896
Query: 890 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 897 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 936
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 911 bits (2354), Expect = 0.0
Identities = 476/926 (51%), Positives = 628/926 (67%), Gaps = 16/926 (1%)
Query: 14 RQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKL 73
R +L L L L I YS+PEE KGS VGN+AKDLGL +++ +R+ +
Sbjct: 12 RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71
Query: 74 H--FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAP 131
F+++ +SG L+ RIDRE++C + C + +VE+ + +F V V I D+ND+ P
Sbjct: 72 MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131
Query: 132 QFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKY 191
QF+ +E+ +++E + G L +D D+ MNSL YQLS N +FSL + DG ++
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191
Query: 192 PELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSL 251
PE+VLQ LDRE ++ HHL+LTA DGG+P RSGT +I I V+DANDNPP F+Q Y +++
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251
Query: 252 REDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEE 311
E+VP GT +L V ATD DEG N E+TYSF V + +F LD TG I ++PLDFEE
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311
Query: 312 VERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKT 371
+ Y++ ++A+D L + KV+++V+D NDN+PE+ ITS++ + E+ PPG ++AL
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371
Query: 372 RDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPP 431
DQDSG+NG C + +PFK+ +NYY+LVT+ LDRE YN+TI A D+G P
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431
Query: 432 LSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSL 491
LS+ I+L +TD+NDN+PVF Q +Y ++PENN GASI V A D D N +++YSL
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491
Query: 492 IASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVL 551
I ++ LS+Y+S+++ +GV++A R+FD+EQ R +L + ARD G P LS+NVSL +
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551
Query: 552 VGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQA 611
+ D+NDNAP +LYPAL DGS + P +A+PGYLVTKVVAVD DSG NAWLSY +++A
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 612 SEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 671
SEPGLFS+GL TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT TL + AD + ++
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671
Query: 672 LPDF-SDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESV 730
L D S P+ + +++ YLVVA A +S +FL VI+ +A RLR+
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731
Query: 731 LCSKSGP--VGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNLNK 783
L S G VG Y++ + D P+ N+ ++ +Q++ K
Sbjct: 732 LASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL----ISQESCEK 787
Query: 784 DSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 843
L A +E K+ QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 788 KGFLSAP--QSLLEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 845
Query: 844 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 903
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 846 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 905
Query: 904 AAGKRDGKAPAGGNGNKKKSGKKEKK 929
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 AAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 908 bits (2347), Expect = 0.0
Identities = 480/923 (52%), Positives = 631/923 (68%), Gaps = 15/923 (1%)
Query: 17 LFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH-- 74
L +LL + I YS+ EE KGS VG++AKDLGL +++ R +R+ +
Sbjct: 15 LLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQL 74
Query: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
F+++ +SG L+ RIDRE+IC + RC + ++E+ +N++ + V I D+ND+ P+F
Sbjct: 75 FALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFL 134
Query: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
+EIN++I E+ + G+ L A DPD+ NSL YQLSPN +FSL + D KYPEL
Sbjct: 135 TEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPEL 194
Query: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
VL++ LDRE + HHLVLTA DGGDPPRS TA I++ V+D ND+ PVFS Y+V++ E+
Sbjct: 195 VLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPEN 254
Query: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
VP GT +L V A D DEG+N E+TYSF + K +F L+ TG I T + LD+EE
Sbjct: 255 VPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETAF 314
Query: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Y + ++A+D T+ KV++ V+D NDN+PE+ +TSLS I ED+P G V+ALF +D+
Sbjct: 315 YEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDR 374
Query: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
DSG+NGEV C++ +PFK+ S +NYY+LVT + LDRE YN+T+ ATD G PPLS
Sbjct: 375 DSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSR 434
Query: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
I + + D NDN P F S+Y V++ ENN GASI V+A D D N +++YSL
Sbjct: 435 ETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAED 494
Query: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
++ +SSYVS+++ +GV++A ++FD+EQLR +L + A D G P LS+N+SL + V D
Sbjct: 495 TIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLD 554
Query: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
+NDN P +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG NAWLSY +++ASEP
Sbjct: 555 QNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEP 614
Query: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
GLF++GL TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT TL + ADS+ EVL D
Sbjct: 615 GLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 674
Query: 675 F-SDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCS 733
S P+ ++ YLVVA+A +S +FL V++ +ALRLR+ E L +
Sbjct: 675 LGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLAN 734
Query: 734 --KSGPVGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNLNKDSM 786
S VG Y++ + D P+ N+ + +Q++ K+
Sbjct: 735 VPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDML----ISQESCEKNDS 790
Query: 787 LLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 846
LL S+ + + + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
Sbjct: 791 LLTSVDFQECKENLPSI-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 849
Query: 847 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 906
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
Sbjct: 850 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 909
Query: 907 KRDGKAPAGGNGNKKKSGKKEKK 929
KRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 KRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 907 bits (2344), Expect = 0.0
Identities = 479/916 (52%), Positives = 619/916 (67%), Gaps = 8/916 (0%)
Query: 20 LLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH--FSV 77
LLL + E I YS+ EE +GSVVGN+AKDLGL+ +++ R +R+ + F++
Sbjct: 18 LLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFAL 77
Query: 78 DAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDE 137
+ +SG L+ RIDRE++C C LE ++E+ + I V V I DVND+ P F ++
Sbjct: 78 NPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQ 137
Query: 138 INLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQ 197
++++E+ + G L A DPD+ +NSL YQL+ N YFSL + DG KYPELVL+
Sbjct: 138 REIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLE 197
Query: 198 KTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPP 257
+ LDRE ++ HHLVLTA DGGDP RSGTA+I I+++D NDN PVF+Q Y VS+RE+VP
Sbjct: 198 RALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPV 257
Query: 258 GTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTI 317
GT +L VKATD DEG N ++TYSF V DK +F L+ +G+I LD+E+ Y I
Sbjct: 258 GTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDI 317
Query: 318 NIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSG 377
++EA D L R KV+V V+DENDN+PE+ +TSL+ + E S PG V+ALF D DSG
Sbjct: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
Query: 378 ENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKT 437
NG V CS+ +PF + + NYY+L+T LDRE+ EYN+T+ ATD+G PPLS+
Sbjct: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
Query: 438 ITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLE 497
I+L + D+NDN P F ++Y ++PENN GASI ++A DPD G N R++YSL +
Sbjct: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
Query: 498 SRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRND 557
LSSYVS+++ +G+++A +FD+EQ R +L + A D G P LS+NVSL + V D+ND
Sbjct: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
Query: 558 NAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLF 617
N P +LYP DGS + PR+A GYLVTKVVAVD DSG NAWLSY ++++SEPGLF
Sbjct: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
Query: 618 SLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDF-S 676
++GL TGEVR RAL D+D+++QRL+V V+D GQPPLSAT TL + ADS+ +VL D S
Sbjct: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
Query: 677 DHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCS--K 734
P+ + + YLVVA+A +S +FL V + +AL+LR+ S L
Sbjct: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPA 737
Query: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFF-TSVDHCPATQDNLNKDSMLLASILT 793
S VG Y++ + D F S ++++ K LL +
Sbjct: 738 SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLLITQDL 797
Query: 794 PSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASA 853
+ D + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASA
Sbjct: 798 LETKGDPNL--QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASA 855
Query: 854 SEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAP 913
SEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAP
Sbjct: 856 SEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAP 915
Query: 914 AGGNGNKKKSGKKEKK 929
AGGNGNKKKSGKKEKK
Sbjct: 916 AGGNGNKKKSGKKEKK 931
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 900 bits (2326), Expect = 0.0
Identities = 477/926 (51%), Positives = 629/926 (67%), Gaps = 19/926 (2%)
Query: 16 VLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH- 74
VL LL + IRYS+ EE+ +GS VGN+AKDLGL L ++ + +R+ +
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 75 -FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQF 133
F+++ +SG L+ +RIDRE++C + C L ++E+ L I+ V V I D+ND+AP+F
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 134 RKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPE 193
+E+ L+ISE+ + G L++A D D+ N+L KY L+PN++FSL + DG KYPE
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 194 LVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRE 253
LVL+++LDRE ++ HHLVL A DGGDP SGT++I + V+DANDN PVF+Q YR+S+ E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 254 DVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVE 313
+ GT IL V ATD DEG +++ Y + VF L T+G + + LD+E+
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 314 RYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRD 373
+ I+IEA+D L TR KVIV V+D NDN+PE +TS + + EDS PG ++ LF D
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 374 QDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLS 433
+DSG+N CSL +PFK+ S +NYY+LVT ALDREQ YN+T+ A D G P LS
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 434 SSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIA 493
+ I L + D+NDNAP F +++Y ++PENN GAS+ V+A DPD N V+YS
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 494 SDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVG 553
++ LSSY+S+++ +GV++A R+FD+EQLR ++ + ARD G+P LS+NVSL + V
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASE 613
D+NDNAP +LYPA DGS + PR+A+PGYLVTKVVAVD DSG NAWLSYH+++ASE
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 614 PGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 673
PGLFS+GL TGEVR RAL D+D+++Q L+VA++D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 674 DF-SDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVL- 731
D S P+ + +++ YLVVA+A +S +FL VI+ +A RLR+ L
Sbjct: 674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLT 733
Query: 732 -CSKSGPVGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNLNKDS 785
S VG Y++ + D P+ N+ ++ +Q++ K
Sbjct: 734 GMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL----ISQESCEKKD 789
Query: 786 MLLA--SILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 843
L A S+L E ++ QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 790 FLSAPQSLLE---EEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 846
Query: 844 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 903
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 847 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 906
Query: 904 AAGKRDGKAPAGGNGNKKKSGKKEKK 929
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 AAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 889 bits (2297), Expect = 0.0
Identities = 472/911 (51%), Positives = 617/911 (67%), Gaps = 23/911 (2%)
Query: 33 IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH--FSVDAQSGDLLVKDRI 90
IRYS+PEE KGS VGN++KDLGL ++ +R+ + F+++ +SG L+ RI
Sbjct: 31 IRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAGRI 90
Query: 91 DREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDEINLEISESVSLGM 150
DRE++C + RC + + +VE+ +F V + I D+ND+ P+F+ +++ ++I+E G
Sbjct: 91 DREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVPGA 150
Query: 151 GTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQKTLDRETQSAHHL 210
L A DPD+ +NSL YQLSPN +FSL + +G PELVL++ LDRE ++AHHL
Sbjct: 151 RYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHHL 210
Query: 211 VLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQD 270
VLTA DGG PPRS T +I + V+D NDN PVF +YRV + E++PPGT +L V A+D D
Sbjct: 211 VLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDPD 270
Query: 271 EGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTINIEAKDRGSLSTR 330
EGIN ++ Y F + +K +F L+ TG I + LD+EE Y + I+A+D G+L R
Sbjct: 271 EGINGKVAYKFRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLGR 330
Query: 331 CKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSLSRGV 390
K+++ V D NDN PE+IITSL ++E+S PG V+A DQDSG+NG+V C +
Sbjct: 331 TKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDNL 390
Query: 391 PFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAP 450
PFK+ S NYY+LVT + LDRE YN+T+ A+D G PPLS+ I LH+ D+NDN P
Sbjct: 391 PFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVADINDNPP 450
Query: 451 VFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYVSVSAQ 510
F ++Y ++ ENN GASI ++A DPD N +V+YS+ L+ LSSY+S+++
Sbjct: 451 TFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSSYISINSD 510
Query: 511 SGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGPD 570
+GV++A ++FD+EQ+R +L + A D G P LS+N+SL + V D+NDNAP +LYPAL D
Sbjct: 511 TGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPTD 570
Query: 571 GSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGEVRMVR 630
GS + PR+A+ GYLVTKVVAVD DSG NAWLSY +++ASEPGLFS+GL TGEVR R
Sbjct: 571 GSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR 630
Query: 631 ALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDF-SDHPTPSDSQAEMQ 689
AL D+D+++Q L+VAV+D GQPPLSAT TL + ADS+ EVL + S P+ + + +
Sbjct: 631 ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSLT 690
Query: 690 FYLVVALALISVLFLLAVILAIALRLRQ----SFSPTAGDCFESVLCSKSGPVGPPNYSE 745
YLVVA+A IS +FL V + + LRLR+ +G V S VG
Sbjct: 691 LYLVVAVAAISCVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLVGVPASHF--VGVEEVQA 748
Query: 746 GTLPYAYNFCVPGDQMN-----PEFNFFTSVDHCPATQDNLNKDSMLLASILTPSV--EA 798
Y+ + D P+ N+ + +Q+ K+ LL S+ EA
Sbjct: 749 FLQTYSQEVSLTADSRKSHLIFPQPNYADML----ISQEGCEKNDSLLTSVDFHEYKNEA 804
Query: 799 DKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAAD 858
D QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAAD
Sbjct: 805 DH---GQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAAD 861
Query: 859 GSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNG 918
GSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNG
Sbjct: 862 GSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNG 921
Query: 919 NKKKSGKKEKK 929
NKKKSGKKEKK
Sbjct: 922 NKKKSGKKEKK 932
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 828 bits (2140), Expect = 0.0
Identities = 465/948 (49%), Positives = 603/948 (63%), Gaps = 42/948 (4%)
Query: 11 AGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSA 70
AG QVL L L + + +RYS+ EE G++VGN+A+DLGL + D+ +R L++ +
Sbjct: 10 AGKWQVLCMLSL-CCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGS 68
Query: 71 EK--LHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVND 128
E+ +FS+ SG L V +IDRE +C C L ++ V E+PL + V V I D+ND
Sbjct: 69 EENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLND 128
Query: 129 HAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDG 188
++P F E + ISES + G L+SA+DPD+ N++S Y LSPN +FSL K DG
Sbjct: 129 NSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDG 188
Query: 189 GKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYR 248
+PELVL++ LDRE Q+ H LVLTA+DGG P RSGT I ++V+D NDN P F V R
Sbjct: 189 KPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLR 248
Query: 249 VSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKA-QHVFSLDYTTGNILTQQPL 307
V + E+ P GT +LR+ ATD DEG N ++ YSF +A +++F LD ++G I P+
Sbjct: 249 VGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPI 308
Query: 308 DFEEVERYTINIEAKDRG--SLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVV 365
DFEE Y I+ A+D+G ++ C + V+V D NDN+PE+++ SL++ ++E +P G V
Sbjct: 309 DFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTV 368
Query: 366 VALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAAT 425
V LF RD+DSG NGEV +S +PF+I S N+Y L+T + LDRE T Y + + A+
Sbjct: 369 VGLFNVRDRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLAS 427
Query: 426 DRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNG 485
D G P L TI L+I+DVNDNAP F Q Y ++ EN PG+ + V+ASDPD G N
Sbjct: 428 DAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNA 487
Query: 486 RVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSAN 545
R++YS++ + ++ SS+V V+ + G +FAQR FD+E L+ ++ + RD GSP L AN
Sbjct: 488 RLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHAN 547
Query: 546 VSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLS 605
SL V V D NDNAP VL+P + SA +PR+A PG LVTKV AVDAD+GHNAWLS
Sbjct: 548 TSLHVFVLDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLS 606
Query: 606 YHVV-QASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVF 664
Y ++ Q++ PGLF + TGEVR RAL + DS Q+++V VRD G P LS+TAT+ LV
Sbjct: 607 YSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVL 666
Query: 665 ADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAG 724
D E +P SD ++++ YL+VALA +S+L L+ A L+ + G
Sbjct: 667 EDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNAD---G 723
Query: 725 DCFESVLCSKSGPVGPPNY----------SEGTLPY-------------AYNFCVPGDQM 761
D C + P Y S+GTL Y Y C
Sbjct: 724 DGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASD 783
Query: 762 NPEFNFFTSVDHCPATQDNLNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRP 821
+F F + T L D++ S + QQAPPNTDWRFSQAQRP
Sbjct: 784 GSDFTFLRPLSVQQPTALALEPDAIRSRSNTL-------RERSQQAPPNTDWRFSQAQRP 836
Query: 822 GTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFT 881
GTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFT
Sbjct: 837 GTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFT 896
Query: 882 LQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
LQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 897 LQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 824 bits (2129), Expect = 0.0
Identities = 448/912 (49%), Positives = 591/912 (64%), Gaps = 25/912 (2%)
Query: 33 IRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRV--SAEKLHFSVDAQSGDLLVKDRI 90
I Y IPEE KG VGN+ +LGL + +SAR RV A + F V+ ++G++ V DR+
Sbjct: 33 IHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVNDRL 92
Query: 91 DREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDEINLEISESVSLGM 150
DRE++C C + LE VVENPL +F V VVI+D+ND+ P F E+ LEISE+V+ G
Sbjct: 93 DREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVAPGT 152
Query: 151 GTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQKTLDRETQSAHHL 210
LESA DPD+ NSL Y+LS NEYF+L + D KY ELVL++ LDRE + + L
Sbjct: 153 RFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSLQL 212
Query: 211 VLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQD 270
VLTALDGG P S + I I V+DANDN PVF+Q +YR + ED P GT +++V ATD D
Sbjct: 213 VLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLD 272
Query: 271 EGINSEITYSFFGVADKA--QHVFSLDYTTGNILTQQPLDFEEVERYTINIEAKDRGSL- 327
EG N EI YSF G ++A + +F+LD TG + + LDFE+ + + I I+AKD+G+
Sbjct: 273 EGPNGEIIYSF-GSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANP 331
Query: 328 -STRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSL 386
CKV+VEVVD NDN+PEI +TS+ + ED+P G V+AL D D+GENG V C +
Sbjct: 332 EGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEV 391
Query: 387 SRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVN 446
G+PF + SS NY+ L T LDRE PEYN++I A D G P LS+ + + ++D+N
Sbjct: 392 PPGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDIN 451
Query: 447 DNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIASDLESRTLSSYVS 506
DN P QS+Y V++ ENN PGA I +S DPD N R+S+ L+ E+ + Y +
Sbjct: 452 DNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGRYFT 511
Query: 507 VSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPA 566
++ +G+V + D+E R FELT D G+P L+ N+S+ + V DRNDNAP+VLYP
Sbjct: 512 INRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQVLYPR 571
Query: 567 LGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGEV 626
P GS++ + +PR G+LV++VV DAD+GHNAWLSY ++ + LF++GL TG++
Sbjct: 572 --PGGSSV-EMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLHTGQI 628
Query: 627 RMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPSDSQA 686
R + D DS RQ L V ++D G+P LS TATL + + E +F P + +
Sbjct: 629 STARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSAPREQKK 688
Query: 687 EMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSKSGPVGPPNYSEG 746
+ FYL+++L L+SV F++ V I ++ + + D + + + S GP +++
Sbjct: 689 NLTFYLLLSLILVSVGFVVTVFGVIIFKVYK--WKQSRDLYRAPVSSLYRTPGPSLHADA 746
Query: 747 T-----LPYAYN---FCVPGDQMNPEFNFFTSVDHCPATQDNLNK-DSMLLASILTPSVE 797
P+ Y+ + +P + + Q+ L D + +L
Sbjct: 747 VRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYRQVL----G 802
Query: 798 ADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA 857
A+ QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA
Sbjct: 803 AESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA 862
Query: 858 DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN 917
DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN
Sbjct: 863 DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN 922
Query: 918 GNKKKSGKKEKK 929
GNKKKSGKKEKK
Sbjct: 923 GNKKKSGKKEKK 934
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 714 bits (1843), Expect = 0.0
Identities = 358/705 (50%), Positives = 498/705 (70%), Gaps = 3/705 (0%)
Query: 16 VLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRV--SAEKL 73
VL +LL + T C IRYS+PEEL KGS VG++++DLGL +++ R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 HFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQF 133
F+++ +SG L+ RIDRE++C +C+L L+ ++E+ + I+ V V + D+ND+AP F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 RKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPE 193
R+ E+ ++ISE+ + M L A DPDI NSL Y+LSPN +FSL+ ++ DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRE 253
LVL++ LDRE ++AHHLVLTA DGGDP R+GTA+IR++V+DANDN P F+Q YR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 DVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVE 313
++ GT +L V ATD DEG+N+E+ YSF V DKA VF LD +G I T LD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 RYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRD 373
Y + ++A D S R KV++ V+D NDN+PE+++TSL+ + E+SP G ++AL D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 QDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLS 433
QDS ENG+V C + +PFK+ S NYY LVTD LDREQ P YN+T+ ATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIA 493
+ I+L++ D NDN PVF Q++Y ++PENN G S+ V+A DPD N +++YSL
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVG 553
+ ++ +LSSYVS+++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASE 613
D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 673
PGLFS+GL TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DFSDHPTPSDSQ-AEMQFYLVVALALISVLFLLAVILAIALRLRQ 717
D +P++S+ +++ YLVVA+A +S +FL VIL +ALRLR+
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRR 718
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 694 bits (1791), Expect = 0.0
Identities = 364/717 (50%), Positives = 492/717 (68%), Gaps = 8/717 (1%)
Query: 6 AQRRRAGPRQVLFPLLLPLFYPTL----CEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61
A R + G R L LLL +F TL IRYS+PEE KGS VGN++KDLGL ++
Sbjct: 2 ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
Query: 62 SARELR-VSAEKLH-FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHV 119
+ R +R VS K F+V+ +SG L+ RIDRE++C+ C L +E +VE+ L I+ V
Sbjct: 61 AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
Query: 120 IVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFS 179
V I D+ND+AP F++DE+ +++SE G L +A DPD+ +NSL YQLSPN YFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
Query: 180 LVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNP 239
L + DG K PELVL+ +LDRE ++AH L+LTALDGGDP R G IR++V+D ND+
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
Query: 240 PVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTG 299
P+F+Q VYRVS+ E++ GT +L V ATD DEGIN E+ YSF + KA +F LD TG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
Query: 300 NILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMED 359
+ + LDFE+ Y + I+ +D G L T +++ VVD NDN+PEI ITS + I+E+
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
Query: 360 SPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYN 419
SPPG V+AL +DQDSGENG+V C + +PFK+ + NYYKL+T LDRE YN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
Query: 420 VTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDP 479
+T+ ATD+G PPLS+ + L++ D NDN PVF S+Y ++PENN GASI V+A DP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
Query: 480 DFGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGS 539
D N V+YSL ++ LSSYVS+++ +GV++A ++FD+EQ R EL + ARD G
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
Query: 540 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSG 599
P LS+NVSL + V D+NDNAP +LYPAL DGS + PR+A+PGYLVTKVVAVD DSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
Query: 600 HNAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATAT 659
NAWLSY +++ASEPGLF++G TGEVR RAL D+D+++Q L+VAV+D GQPPLSAT T
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
Query: 660 LHLVFADSLQEVLPDFSDHPTPSDSQ-AEMQFYLVVALALISVLFLLAVILAIALRL 715
L + ADS+ EVL D + ++S+ +++ YLVVA+A +S +FL+ VI+ +ALRL
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRL 717
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,703,594
Number of Sequences: 37866
Number of extensions: 1700579
Number of successful extensions: 10418
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3243
Number of HSP's gapped (non-prelim): 656
length of query: 929
length of database: 18,247,518
effective HSP length: 112
effective length of query: 817
effective length of database: 14,006,526
effective search space: 11443331742
effective search space used: 11443331742
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.