Guide to the Human Genome
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Name: CAPSL Sequence: fasta or formatted (208aa) NCBI GI: 110835717
Description:

calcyphosine-like

Referenced in:

Thyroid and Thyroid Hormone Receptor

Other entries for this name:
alt mRNA [208aa] calcyphosine-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         14           1
 C cysteine            0.5          1           1
 D aspartate           9.1         19           3
 E glutamate           8.2         17           2
 F phenylalanine       6.2         13           1
 G glycine             6.2         13           1
 H histidine           1.4          3           2
 I isoleucine          5.3         11           2
 K lysine              7.7         16           3
 L leucine             7.7         16           2
 M methionine          4.8         10           2
 N asparagine          4.3          9           2
 P proline             2.9          6           2
 Q glutamine           2.4          5           1
 R arginine            8.2         17           2
 S serine              2.9          6           1
 T threonine           5.8         12           2
 V valine              5.3         11           2
 W tryptophan          1.0          2           1
 Y tyrosine            3.4          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcyphosine-like 
CAPSL                 1.000   calcyphosine-like 
CAPS                  0.467   calcyphosine isoform a 
CAPS                  0.347   calcyphosine isoform b 
CETN1                 0.106   centrin 1 
CAPS2                 0.106   calcyphosine 2 
CETN2                 0.095   caltractin 
TNNC2                 0.093   fast skeletal muscle troponin C 
CALML5                0.088   calmodulin-like 5 
CALM3                 0.088   calmodulin 3 
CALM2                 0.088   calmodulin 2 
CALM1                 0.088   calmodulin 1 
CALML3                0.080   calmodulin-like 3 
TNNC1                 0.078   troponin C, slow 
PPP3R1                0.075   protein phosphatase 3, regulatory subunit B, alpha is...
CETN3                 0.075   centrin 3 
SLC25A24              0.068   solute carrier family 25 member 24 isoform 2 
HPCA                  0.065   hippocalcin 
GUCA1C                0.065   guanylate cyclase activator 1C 
NCALD                 0.063   neurocalcin delta 
NCALD                 0.063   neurocalcin delta 
NCALD                 0.063   neurocalcin delta 
NCALD                 0.063   neurocalcin delta 
NCALD                 0.063   neurocalcin delta 
NCALD                 0.063   neurocalcin delta 
NCALD                 0.063   neurocalcin delta 
NCALD                 0.063   neurocalcin delta 
VSNL1                 0.063   visinin-like 1 
HPCAL4                0.063   hippocalcin-like protein 4 
PPP3R2                0.060   protein phosphatase 3 regulatory subunit B, beta iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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