Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HCLS1 Sequence: fasta or formatted (486aa) NCBI GI: 167234422
Description:

hematopoietic cell-specific Lyn substrate 1

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         38           2
 C cysteine            0.4          2           1
 D aspartate           7.2         35           2
 E glutamate          14.2         69           4
 F phenylalanine       2.5         12           1
 G glycine             9.3         45           2
 H histidine           2.7         13           1
 I isoleucine          2.5         12           1
 K lysine              7.2         35           2
 L leucine             3.9         19           2
 M methionine          1.6          8           1
 N asparagine          1.4          7           1
 P proline             7.4         36           2
 Q glutamine           3.5         17           2
 R arginine            5.6         27           2
 S serine              7.2         35           2
 T threonine           3.7         18           2
 V valine              7.0         34           2
 W tryptophan          1.4          7           2
 Y tyrosine            3.5         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hematopoietic cell-specific Lyn substrate 1 
CTTN                  0.400   cortactin isoform b 
CTTN                  0.381   cortactin isoform a 
DBNL                  0.083   drebrin-like isoform b 
DBNL                  0.082   drebrin-like isoform a 
DBNL                  0.079   drebrin-like isoform c 
SH3D19                0.045   SH3 domain containing 19 isoform c 
SH3D19                0.045   SH3 domain containing 19 isoform b 
SH3D19                0.045   SH3 domain containing 19 isoform a 
ABI2                  0.044   abl interactor 2 
PACSIN2               0.039   protein kinase C and casein kinase substrate in neu...
ITSN1                 0.037   intersectin 1 isoform ITSN-s 
ITSN1                 0.037   intersectin 1 isoform ITSN-l 
SH3GL2                0.037   SH3-domain GRB2-like 2 
TTN                   0.036   titin isoform N2-A 
MYO1F                 0.036   myosin IF 
ABI1                  0.036   abl-interactor 1 isoform d 
ABI1                  0.036   abl-interactor 1 isoform b 
ABI1                  0.036   abl-interactor 1 isoform a 
ABI1                  0.035   abl-interactor 1 isoform c 
ASAP2                 0.034   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
KIAA1804              0.033   mixed lineage kinase 4 
SH3KBP1               0.033   SH3-domain kinase binding protein 1 isoform a 
PELP1                 0.032   proline, glutamic acid and leucine rich protein 1 [...
SH3GL1                0.032   SH3-domain GRB2-like 1 
MYO1E                 0.032   myosin IE 
PACSIN1               0.031   protein kinase C and casein kinase substrate in neur...
ITSN2                 0.031   intersectin 2 isoform 3 
ITSN2                 0.031   intersectin 2 isoform 1 
ITSN2                 0.031   intersectin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press