Guide to the Human Genome
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Name: PDE4A Sequence: fasta or formatted (860aa) NCBI GI: 162329610
Description:

phosphodiesterase 4A isoform 2

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [886aa] phosphodiesterase 4A isoform 1
alt prot [825aa] phosphodiesterase 4A isoform 3
alt prot [647aa] phosphodiesterase 4A isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         80           3
 C cysteine            1.4         12           1
 D aspartate           5.0         43           1
 E glutamate           8.6         74           7
 F phenylalanine       3.3         28           2
 G glycine             4.4         38           4
 H histidine           2.8         24           2
 I isoleucine          2.9         25           1
 K lysine              3.0         26           2
 L leucine            10.8         93           3
 M methionine          3.0         26           1
 N asparagine          3.1         27           2
 P proline             7.8         67           5
 Q glutamine           5.2         45           2
 R arginine            5.8         50           3
 S serine              9.4         81           2
 T threonine           5.6         48           2
 V valine              5.6         48           2
 W tryptophan          1.0          9           1
 Y tyrosine            1.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 4A isoform 2 
PDE4A                 0.904   phosphodiesterase 4A isoform 3 
PDE4A                 0.904   phosphodiesterase 4A isoform 1 
PDE4A                 0.725   phosphodiesterase 4A isoform 4 
PDE4B                 0.549   phosphodiesterase 4B isoform 3 
PDE4B                 0.540   phosphodiesterase 4B isoform 1 
PDE4B                 0.540   phosphodiesterase 4B isoform 1 
PDE4D                 0.533   phosphodiesterase 4D isoform 1 
PDE4D                 0.533   phosphodiesterase 4D isoform 2 
PDE4C                 0.490   phosphodiesterase 4C isoform PDE4C-1 
PDE4C                 0.490   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.477   phosphodiesterase 4C isoform PDE4C-2 
PDE4B                 0.458   phosphodiesterase 4B isoform 2 
PDE1A                 0.125   phosphodiesterase 1A isoform 2 
PDE1A                 0.125   phosphodiesterase 1A isoform 1 
PDE1C                 0.123   phosphodiesterase 1C 
PDE1B                 0.122   phosphodiesterase 1B 
PDE7B                 0.113   phosphodiesterase 7B 
PDE8A                 0.112   phosphodiesterase 8A isoform 2 
PDE8A                 0.112   phosphodiesterase 8A isoform 1 
PDE8B                 0.110   phosphodiesterase 8B isoform 2 
PDE8B                 0.110   phosphodiesterase 8B isoform 4 
PDE8B                 0.110   phosphodiesterase 8B isoform 5 
PDE8B                 0.110   phosphodiesterase 8B isoform 3 
PDE8B                 0.110   phosphodiesterase 8B isoform 1 
PDE7A                 0.109   phosphodiesterase 7A isoform a 
PDE7A                 0.100   phosphodiesterase 7A isoform b 
PDE3B                 0.090   phosphodiesterase 3B 
PDE9A                 0.090   phosphodiesterase 9A isoform g 
PDE9A                 0.090   phosphodiesterase 9A isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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