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Search of human proteins with 158420731
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|158420731 chromodomain helicase DNA binding protein 3
isoform 3 [Homo sapiens]
(2059 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 4226 0.0
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 4028 0.0
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 3940 0.0
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 2701 0.0
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 2629 0.0
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 581 e-165
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 566 e-161
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 526 e-148
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 514 e-145
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 514 e-145
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 505 e-142
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 444 e-124
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 435 e-121
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 422 e-117
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 410 e-114
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 407 e-113
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 405 e-112
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 403 e-111
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 402 e-111
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 401 e-111
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 401 e-111
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 393 e-108
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 393 e-108
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 388 e-107
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 290 1e-77
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 271 6e-72
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 271 6e-72
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 268 5e-71
gi|4557565 excision repair cross-complementing rodent repair def... 261 7e-69
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 219 3e-56
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 4226 bits (10961), Expect = 0.0
Identities = 2059/2059 (100%), Positives = 2059/2059 (100%)
Query: 1 MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDR 60
MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDR
Sbjct: 1 MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDR 60
Query: 61 GRDRHSPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENK 120
GRDRHSPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENK
Sbjct: 61 GRDRHSPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENK 120
Query: 121 PGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKG 180
PGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKG
Sbjct: 121 PGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKG 180
Query: 181 EGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIP 240
EGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIP
Sbjct: 181 EGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIP 240
Query: 241 MSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPA 300
MSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPA
Sbjct: 241 MSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPA 300
Query: 301 LPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGG 360
LPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGG
Sbjct: 301 LPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGG 360
Query: 361 KRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLG 420
KRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLG
Sbjct: 361 KRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLG 420
Query: 421 CPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCP 480
CPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCP
Sbjct: 421 CPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCP 480
Query: 481 HCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIH 540
HCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIH
Sbjct: 481 HCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIH 540
Query: 541 CLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPRP 600
CLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPRP
Sbjct: 541 CLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPRP 600
Query: 601 LQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDD 660
LQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDD
Sbjct: 601 LQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDD 660
Query: 661 GKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQS 720
GKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQS
Sbjct: 661 GKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQS 720
Query: 721 TWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVK 780
TWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVK
Sbjct: 721 TWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVK 780
Query: 781 YETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKE 840
YETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKE
Sbjct: 781 YETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKE 840
Query: 841 GHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 900
GHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG
Sbjct: 841 GHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGG 900
Query: 901 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 960
KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG
Sbjct: 901 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 960
Query: 961 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 1020
YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG
Sbjct: 961 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 1020
Query: 1021 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNI 1080
PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNI
Sbjct: 1021 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNI 1080
Query: 1081 MMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1140
MMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI
Sbjct: 1081 MMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1140
Query: 1141 FSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGL 1200
FSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGL
Sbjct: 1141 FSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGL 1200
Query: 1201 GINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRK 1260
GINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRK
Sbjct: 1201 GINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRK 1260
Query: 1261 MMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIA 1320
MMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIA
Sbjct: 1261 MMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIA 1320
Query: 1321 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1380
RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL
Sbjct: 1321 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1380
Query: 1381 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGR 1440
LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGR
Sbjct: 1381 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGR 1440
Query: 1441 RQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLV 1500
RQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLV
Sbjct: 1441 RQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLV 1500
Query: 1501 RDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKK 1560
RDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKK
Sbjct: 1501 RDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKK 1560
Query: 1561 VQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPS 1620
VQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPS
Sbjct: 1561 VQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPS 1620
Query: 1621 EKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEV 1680
EKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEV
Sbjct: 1621 EKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEV 1680
Query: 1681 PGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGD 1740
PGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGD
Sbjct: 1681 PGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGD 1740
Query: 1741 RELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWH 1800
RELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWH
Sbjct: 1741 RELRPGPRDEPRSNGRREEKTEKPRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWH 1800
Query: 1801 RRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLE 1860
RRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLE
Sbjct: 1801 RRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLE 1860
Query: 1861 QALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVL 1920
QALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVL
Sbjct: 1861 QALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVL 1920
Query: 1921 HKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAYP 1980
HKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAYP
Sbjct: 1921 HKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPTPAYP 1980
Query: 1981 PGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGALV 2040
PGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGALV
Sbjct: 1981 PGPYATPPGYGAAFSAAPVGALAAAGANYSQMPAGSFITAATNGPPVLVKKEKEMVGALV 2040
Query: 2041 SDGLDRKEPRAGEVICIDD 2059
SDGLDRKEPRAGEVICIDD
Sbjct: 2041 SDGLDRKEPRAGEVICIDD 2059
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 4028 bits (10447), Expect = 0.0
Identities = 1968/1968 (100%), Positives = 1968/1968 (100%)
Query: 92 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 151
PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG
Sbjct: 33 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 92
Query: 152 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 211
SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS
Sbjct: 93 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 152
Query: 212 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 271
EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA
Sbjct: 153 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 212
Query: 272 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 331
AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS
Sbjct: 213 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 272
Query: 332 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 391
KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH
Sbjct: 273 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 332
Query: 392 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 451
SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII
Sbjct: 333 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 392
Query: 452 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 511
LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE
Sbjct: 393 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 452
Query: 512 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 571
DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI
Sbjct: 453 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 512
Query: 572 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 631
LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI
Sbjct: 513 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 572
Query: 632 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 691
FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT
Sbjct: 573 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 632
Query: 692 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 751
VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP
Sbjct: 633 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 692
Query: 752 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 811
AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA
Sbjct: 693 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 752
Query: 812 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 871
QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY
Sbjct: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 812
Query: 872 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 931
VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL
Sbjct: 813 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 872
Query: 932 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 991
GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE
Sbjct: 873 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 932
Query: 992 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 1051
RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ
Sbjct: 933 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 992
Query: 1052 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1111
KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG
Sbjct: 993 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1052
Query: 1112 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1171
GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG
Sbjct: 1053 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1112
Query: 1172 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1231
ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR
Sbjct: 1113 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1172
Query: 1232 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1291
IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG
Sbjct: 1173 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1232
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1351
TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV
Sbjct: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1292
Query: 1352 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1411
VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA
Sbjct: 1293 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1352
Query: 1412 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1471
AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF
Sbjct: 1353 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1412
Query: 1472 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1531
NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE
Sbjct: 1413 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1472
Query: 1532 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1591
TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS
Sbjct: 1473 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1532
Query: 1592 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1651
SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK
Sbjct: 1533 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1592
Query: 1652 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1711
METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE
Sbjct: 1593 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1652
Query: 1712 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1771
EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA
Sbjct: 1653 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1712
Query: 1772 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1831
DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII
Sbjct: 1713 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1772
Query: 1832 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1891
NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR
Sbjct: 1773 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1832
Query: 1892 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1951
FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI
Sbjct: 1833 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1892
Query: 1952 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 2011
AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ
Sbjct: 1893 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 1952
Query: 2012 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2059
MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD
Sbjct: 1953 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2000
Score = 33.9 bits (76), Expect = 1.7
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 24/126 (19%)
Query: 74 PPPPPPPPPLPPPPP---PPPPDKDDIRLLPSALGVKKRKRGP-----KKQKENKPGKPR 125
P P PP LPPPP PPP + G K+R + P +K+ K P
Sbjct: 233 PIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL 292
Query: 126 K--------RKKRDSEEEFGSERDEYREKSES---GGSEYGT-----GPGRKRRRKHREK 169
K ++K+ F S+ E ES GS + GP R ++ K
Sbjct: 293 KIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRP 352
Query: 170 KEKKTK 175
KK K
Sbjct: 353 GRKKKK 358
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 9 EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDD 43
E+E + EEEEE EEEG+EE E+E +EDD
Sbjct: 424 EKEGVQWEAKEEEEEYEEEGEEEGEKE----EEDD 454
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 3940 bits (10219), Expect = 0.0
Identities = 1934/1968 (98%), Positives = 1934/1968 (98%), Gaps = 34/1968 (1%)
Query: 92 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 151
PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG
Sbjct: 33 PDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGG 92
Query: 152 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 211
SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS
Sbjct: 93 SEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFS 152
Query: 212 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 271
EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA
Sbjct: 153 EEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAA 212
Query: 272 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 331
AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS
Sbjct: 213 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 272
Query: 332 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 391
KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH
Sbjct: 273 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVH 332
Query: 392 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 451
SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII
Sbjct: 333 SASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEII 392
Query: 452 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 511
LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE
Sbjct: 393 LCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEE 452
Query: 512 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 571
DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI
Sbjct: 453 DDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKI 512
Query: 572 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 631
LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI
Sbjct: 513 LHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEI 572
Query: 632 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 691
FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT
Sbjct: 573 FHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMT 632
Query: 692 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 751
VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP
Sbjct: 633 VHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDP 692
Query: 752 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 811
AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA
Sbjct: 693 AQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWA 752
Query: 812 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 871
QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY
Sbjct: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFY 812
Query: 872 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 931
VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL
Sbjct: 813 VVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAAL 872
Query: 932 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 991
GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE
Sbjct: 873 GSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPE 932
Query: 992 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 1051
RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ
Sbjct: 933 RFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQ 992
Query: 1052 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1111
KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG
Sbjct: 993 KKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEG 1052
Query: 1112 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1171
GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG
Sbjct: 1053 GALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG 1112
Query: 1172 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1231
ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR
Sbjct: 1113 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1172
Query: 1232 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1291
IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG
Sbjct: 1173 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1232
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1351
TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV
Sbjct: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYV 1292
Query: 1352 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1411
VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA
Sbjct: 1293 VREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA 1352
Query: 1412 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1471
AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF
Sbjct: 1353 AQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGF 1412
Query: 1472 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1531
NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE
Sbjct: 1413 NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSE 1472
Query: 1532 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1591
TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS
Sbjct: 1473 TFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRAS 1532
Query: 1592 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1651
SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK
Sbjct: 1533 SPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEK 1592
Query: 1652 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGE 1711
METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKS
Sbjct: 1593 METEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKS----------- 1641
Query: 1712 EKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1771
EDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA
Sbjct: 1642 -----------------------EDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIA 1678
Query: 1772 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1831
DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII
Sbjct: 1679 DGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAII 1738
Query: 1832 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1891
NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR
Sbjct: 1739 NEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHAR 1798
Query: 1892 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1951
FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI
Sbjct: 1799 FAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPI 1858
Query: 1952 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 2011
AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ
Sbjct: 1859 AARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQ 1918
Query: 2012 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 2059
MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD
Sbjct: 1919 MPAGSFITAATNGPPVLVKKEKEMVGALVSDGLDRKEPRAGEVICIDD 1966
Score = 33.9 bits (76), Expect = 1.7
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 24/126 (19%)
Query: 74 PPPPPPPPPLPPPPP---PPPPDKDDIRLLPSALGVKKRKRGP-----KKQKENKPGKPR 125
P P PP LPPPP PPP + G K+R + P +K+ K P
Sbjct: 233 PIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL 292
Query: 126 K--------RKKRDSEEEFGSERDEYREKSES---GGSEYGT-----GPGRKRRRKHREK 169
K ++K+ F S+ E ES GS + GP R ++ K
Sbjct: 293 KIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRP 352
Query: 170 KEKKTK 175
KK K
Sbjct: 353 GRKKKK 358
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 9 EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDD 43
E+E + EEEEE EEEG+EE E+E +EDD
Sbjct: 424 EKEGVQWEAKEEEEEYEEEGEEEGEKE----EEDD 454
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 2701 bits (7001), Expect = 0.0
Identities = 1370/1987 (68%), Positives = 1574/1987 (79%), Gaps = 159/1987 (8%)
Query: 109 RKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHRE 168
+K+ PKK KENK K +++KK S +E ++ EKSES GS+Y P +K+++K ++
Sbjct: 49 KKKKPKKLKENKC-KGKRKKKEGSNDELSENEEDLEEKSESEGSDYS--PNKKKKKKLKD 105
Query: 169 KKEKKTKRRKKGEGDGGQKQ---VEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFS 225
KKEKK KR+KK E + E KSS L+ WGL+DV+++FSEEDYHTLTNYKAFS
Sbjct: 106 KKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFS 165
Query: 226 QFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSA 285
QF+RPLIAKKNPKIPMSKMMT+LGAKWREFSANNPFKGS+AA AAAA AAA
Sbjct: 166 QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVET------ 219
Query: 286 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 345
V+ + P+A S PP +P QP PIR+AKTKEGKGPG +++ K + DG+KK +G
Sbjct: 220 -VTISPPLAVS-PPQVP-------QPVPIRKAKTKEGKGPGVRKKIKGSK--DGKKKGKG 268
Query: 346 KKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKK 405
KK A LK + G + KRKKG S E E EESD DS S+HSAS R + K
Sbjct: 269 KKTAGLKFRFGGISNKRKKGSS-------SEEDEREESDFDSASIHSASVRSECSAALGK 321
Query: 406 LKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 465
+ R RKKK++ ++ DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL
Sbjct: 322 KSKRR--RKKKRI---------DDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCL 370
Query: 466 DPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGG 525
DPEL++APEGKWSCPHCEKEG+QWE K++++E EE G EE EEDDHME+CRVCKDGG
Sbjct: 371 DPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEE----EEDDHMEFCRVCKDGG 426
Query: 526 ELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPP----V 581
ELLCCDAC SSYH+HCLNPPLP+IPNGEWLCPRCTCP LKG+VQ+ILHWRW EPP V
Sbjct: 427 ELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMV 486
Query: 582 AVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQ 641
+P P D P +PPP+PL+G EREFFVKW GLSYWHCSW KELQLE++H VMYRNYQ
Sbjct: 487 GLPGP---DVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ 543
Query: 642 RKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVD 701
RKNDMDEPPP DYGSG++DGKS+KRK KDP YA+MEE++YR+GIKPEWM +HRI+NHS D
Sbjct: 544 RKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFD 603
Query: 702 KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKK 761
KKG+ HYL+KW+DLPYDQ TWE D+++IP Y+ KQ+YW HREL++GED P++ KK
Sbjct: 604 KKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKG 663
Query: 762 KELQGDG---PPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTIL 818
K+L+ D PP +P DPTVK++ QP +I +TGGTLH YQLEGLNWLRFSWAQGTDTIL
Sbjct: 664 KKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTIL 723
Query: 819 ADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGD 878
ADEMGLGKT+QTIVFLYSLYKEGH+KGP+LVSAPLSTIINWEREF+MWAP FYVVTYTGD
Sbjct: 724 ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD 783
Query: 879 KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWAC 938
K+SR++IRENEFSFEDNAI+ GKK F+MK+E Q+KFHVLLTSYELITIDQA LGSI WAC
Sbjct: 784 KESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWAC 843
Query: 939 LVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 998
LVVDEAHRLKNNQSKFFRVLN YKID+KLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG
Sbjct: 844 LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 903
Query: 999 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYI 1058
FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS MQKKYYK+I
Sbjct: 904 FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI 963
Query: 1059 LTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSS 1118
LTRNFEALNS+GGGNQVSLLNIMMDLKKCCNHPYLFPVAA+E+P LP+G+Y+G +L+KSS
Sbjct: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSS 1023
Query: 1119 GKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAI 1178
GKLMLLQKML+KL+++GHRVLIFSQMTKMLDLLEDFL+YEGYKYERIDGGITG LRQEAI
Sbjct: 1024 GKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI 1083
Query: 1179 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKV 1238
DRFNAPGAQQFCFLLSTRAGGLGINLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KV
Sbjct: 1084 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1143
Query: 1239 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD 1298
MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK+GSM+KQELDDILKFGTEELFKD
Sbjct: 1144 MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD 1203
Query: 1299 ENE-------------------------------------GENKE-EDSSVIHYDNEAIA 1320
+ E G+NK+ EDSSVIHYD+ AI+
Sbjct: 1204 DVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAIS 1263
Query: 1321 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1380
+LLDRNQDAT+DT++QNMNEYLSSFKVAQYVVREED +EE+EREIIKQEENVDPDYWEKL
Sbjct: 1264 KLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKL 1323
Query: 1381 LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEEEDEDF 1433
LRHHYEQQQEDLARNLGKGKR+RKQVNYNDA+QEDQ DNQSEYS+GSE+EDEDF
Sbjct: 1324 LRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDF 1383
Query: 1434 DERPE---GRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPP 1490
+ERPE GRRQS+RQL++++DKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MRWGMPP
Sbjct: 1384 EERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP 1443
Query: 1491 QDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQVLTR 1550
QDAF + WLVRDLRGK+EKEF+AYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ VLTR
Sbjct: 1444 QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR 1503
Query: 1551 IGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKR----SSRASSPTKTSPTTPEASAT 1606
IGVMSLV+KKVQEFEH+NG++S P+L+P+ K SS ++P SP +
Sbjct: 1504 IGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKSGEVISSDPNTPVPASPAHLLPAPL 1563
Query: 1607 NSPCTSKPATPAPSEKGEGIRTP------------LEKEEAENQEEKPEKNSRIGEKM-- 1652
P + EK G + P L++ E+E++ E P R E+
Sbjct: 1564 GLPDKMEAQLGYMDEKDPGAQKPRQPLEVQALPAALDRVESEDKHESPASKERAREERPE 1623
Query: 1653 ETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEE 1712
ETE PSP E + P K + D++ E+ RGD + + T E E+
Sbjct: 1624 ETEKAPPSPEQLPREEVLPEKEKILDKL-----ELSLIHS-RGDSSELRPDDTKAE--EK 1675
Query: 1713 KPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEKTEKPRFMFNIAD 1772
+P++ Q++ ++ E D GK+ED KG K +FMFNIAD
Sbjct: 1676 EPIETQQNGDK---EEDDEGKKEDKKG-----------------------KFKFMFNIAD 1709
Query: 1773 GGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIIN 1832
GGFTELHTLWQNEERAA+SSGK+ +IWHRRHDYWLLAGIV HGYARWQDIQND ++ I+N
Sbjct: 1710 GGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYMILN 1769
Query: 1833 EPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARF 1892
EPFK+E +KGN+LEMKNKFLARRFKLLEQALVIEEQLRRAAYLN++Q+P HPAMAL+AR
Sbjct: 1770 EPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARL 1829
Query: 1893 AEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIA 1952
AE ECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLP+ LSRIPP+A
Sbjct: 1830 AEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVA 1889
Query: 1953 ARLQMSERSILSRLASKGTEPHPTPAYPPGPYATPPGYGAAFSAAPVGALAAAGANYSQM 2012
ARLQMSERSILSRL ++ + P G + + Y F G NY+QM
Sbjct: 1890 ARLQMSERSILSRLTNRAGD----PTIQQGAFGSSQMYSNNFGPNFRGPGPGGIVNYNQM 1945
Query: 2013 PAGSFIT 2019
P G ++T
Sbjct: 1946 PLGPYVT 1952
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 2629 bits (6814), Expect = 0.0
Identities = 1351/1945 (69%), Positives = 1539/1945 (79%), Gaps = 119/1945 (6%)
Query: 83 LPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKR---------DSE 133
LPPP P D ++ +KK+K+ PKK ++ K K +++KK DS
Sbjct: 28 LPPPHPENEEDPEEDLSETETPKLKKKKK-PKKPRDPKIPKSKRQKKERMLLCRQLGDSS 86
Query: 134 ---EEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEG---DGGQK 187
EF E +E +S+S GS+Y PG+K+++K KKEKK+K ++K E D
Sbjct: 87 GEGPEFVEEEEEVALRSDSEGSDYT--PGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDD 144
Query: 188 QVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTI 247
E KSSA LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +
Sbjct: 145 SKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMV 204
Query: 248 LGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAA 307
LGAKWREFS NNPFKGS+ A AAAAAAA AV E + A A PPPP
Sbjct: 205 LGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA-----------PPPPPV 253
Query: 308 DIQPPPIRRAKTKEGKGPGHKRRSK-SPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGG 366
++ PIR+AKTKEGKGP +R+ K SPRVPD KK + KK+APLKIKLG G KRK+
Sbjct: 254 EV---PIRKAKTKEGKGPNARRKPKGSPRVPDA-KKPKPKKVAPLKIKLGGFGSKRKRSS 309
Query: 367 SYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAG 426
S D ESD D S++S S R+ + ++ KKKK G
Sbjct: 310 SEDDDLDV-------ESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKK-------KG 355
Query: 427 EEEV---DGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCE 483
EEEV DGYETDHQDYCEVCQQGGEIILCDTCPRAYH+VCLDP++++APEGKWSCPHCE
Sbjct: 356 EEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 415
Query: 484 KEGVQWEAKEEEEEYEEEGEEEGE--KEEEDDHMEYCRVCKDGGELLCCDACISSYHIHC 541
KEG+QWEAKE+ E EE EE G +EE+D HME+CRVCKDGGELLCCD C SSYHIHC
Sbjct: 416 KEGIQWEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHC 475
Query: 542 LNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPRPL 601
LNPPLP+IPNGEWLCPRCTCP LKG+VQKIL W+WG+PP P P+ D +P+ P P+PL
Sbjct: 476 LNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPL 535
Query: 602 QGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDG 661
+GR ER+FFVKW G+SYWHCSW ELQLE+ VM+RNYQRKNDMDEPP D+G E+
Sbjct: 536 EGRPERQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEE-- 593
Query: 662 KSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQST 721
KS KRK KDP +AEMEE++YR+GIKPEWM +HRI+NHSVDKKG+ HYL+KWRDLPYDQ++
Sbjct: 594 KSRKRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQAS 653
Query: 722 WEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 781
WE +++ I +Y+ KQSYW HREL+ GE+ +P K KK K + + PP +PT DPTVKY
Sbjct: 654 WESEDVEIQDYDLFKQSYWNHRELMRGEE-GRPGKKLKKVKLRKLERPPETPTVDPTVKY 712
Query: 782 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 841
E QP ++ ATGGTLH YQ+EGLNWLRFSWAQGTDTILADEMGLGKT+QT VFLYSLYKEG
Sbjct: 713 ERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEG 772
Query: 842 HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 901
H+KGPFLVSAPLSTIINWEREF+MWAP YVVTY GDKDSRAIIRENEFSFEDNAI+GGK
Sbjct: 773 HSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGK 832
Query: 902 KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 961
KA +MK+EA VKFHVLLTSYELITID A LGSI WACL+VDEAHRLKNNQSKFFRVLNGY
Sbjct: 833 KASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY 892
Query: 962 KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 1021
+ HKLLLTGTPLQNNLEELFHLLNFLTPERF+NLEGFLEEFADI+KEDQIKKLHD+LGP
Sbjct: 893 SLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGP 952
Query: 1022 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIM 1081
HMLRRLKADVFKNMP+KTELIVRVELSPMQKKYYKYILTRNFEALN+RGGGNQVSLLN++
Sbjct: 953 HMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVV 1012
Query: 1082 MDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIF 1141
MDLKKCCNHPYLFPVAAME+PK+P+G Y+G ALI++SGKL+LLQKML+ LKE GHRVLIF
Sbjct: 1013 MDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIF 1072
Query: 1142 SQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1201
SQMTKMLDLLEDFL++EGYKYERIDGGITG +RQEAIDRFNAPGAQQFCFLLSTRAGGLG
Sbjct: 1073 SQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1132
Query: 1202 INLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKM 1261
INLATADTVII+DSDWNPHNDIQAFSRAHRIGQ KVMIYRFVTRASVEERITQVAK+KM
Sbjct: 1133 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKM 1192
Query: 1262 MLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKDE---NEGENKE-EDSSVIHYDNE 1317
MLTHLVVRPGLGSK GSMSKQELDDILKFGTEELFKDE G+NKE EDSSVIHYD++
Sbjct: 1193 MLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDK 1252
Query: 1318 AIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREED--KIEEIEREIIKQEENVDPD 1375
AI RLLDRNQD TEDT++Q MNEYLSSFKVAQYVVREE+ + EE+EREIIKQEE+VDPD
Sbjct: 1253 AIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPD 1312
Query: 1376 YWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQ-------DNQSEYSVGSEE 1428
YWEKLLRHHYEQQQEDLARNLGKGKR+RKQVNYND +QED+ DNQS+YSV SEE
Sbjct: 1313 YWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEE 1372
Query: 1429 EDEDFDERPEG-RRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWG 1487
DEDFDER E RR S++ LRN+KDKPLPPLLARVGGNIEVLGFN RQRKAFLNA+MR+G
Sbjct: 1373 GDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRYG 1432
Query: 1488 MPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQQV 1547
MPPQDAFTTQWLVRDLRGK+EKEFKAYVSLFMRHLCEPGADG+ETFADGVPREGLSRQ V
Sbjct: 1433 MPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHV 1492
Query: 1548 LTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATN 1607
LTRIGVMSL++KKVQEFEH+NGRWSMPEL A+ + + + S P SP TP S
Sbjct: 1493 LTRIGVMSLIRKKVQEFEHVNGRWSMPEL-----AEVEENKKMSQPGSPSPKTPTPSTPG 1547
Query: 1608 SPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKME-TEADAPS------ 1660
+ PA P+E G I KEE + EK K++ +E T+A AP+
Sbjct: 1548 DTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAPASEDEKV 1607
Query: 1661 --PAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGD----REKSATESTP--GERGEE 1712
P E++E ++ E P ME EP D EKSA + TP E EE
Sbjct: 1608 VVEPPEGEEKVEKAEVKERTEEP-----METEPKGAADVEKVEEKSAIDLTPIVVEDKEE 1662
Query: 1713 KPLDGQEHRERPEGETGDLGKREDVKGDRELRPG--PRDEPRSNGRREEKTEKPRFMFNI 1770
K K E+ K + L+ G P+D N +++K K RFMFNI
Sbjct: 1663 K-------------------KEEEEKKEVMLQNGETPKD---LNDEKQKKNIKQRFMFNI 1700
Query: 1771 ADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAI 1830
ADGGFTELH+LWQNEERAA + K EIWHRRHDYWLLAGI+ HGYARWQDIQND ++AI
Sbjct: 1701 ADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAI 1760
Query: 1831 INEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHA 1890
+NEPFK E N+GNFLE+KNKFLARRFKLLEQALVIEEQLRRAAYLN+S++P+HP+MAL+
Sbjct: 1761 LNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNT 1820
Query: 1891 RFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPP 1950
RFAE ECLAESHQHLSKES+AGNKPANAVLHKVL QLEELLSDMKADVTRLPAT++RIPP
Sbjct: 1821 RFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPP 1880
Query: 1951 IAARLQMSERSILSRLASKGTEPHP 1975
+A RLQMSER+ILSRLA++ EP P
Sbjct: 1881 VAVRLQMSERNILSRLANRAPEPTP 1905
Score = 34.3 bits (77), Expect = 1.3
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 74 PPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGK----PRKRKK 129
P P P P P P PP +D I++ ++L ++ G K+ K P +
Sbjct: 1541 PTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAPAP 1600
Query: 130 RDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQV 189
+E+ E E EK E + + +E+ E+ + KG D ++V
Sbjct: 1601 ASEDEKVVVEPPEGEEKVE--------------KAEVKERTEEPMETEPKGAAD--VEKV 1644
Query: 190 EQKSSATLLLTWGLEDVEHVFSEED 214
E+K SA L +ED E EE+
Sbjct: 1645 EEK-SAIDLTPIVVEDKEEKKEEEE 1668
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 581 bits (1497), Expect = e-165
Identities = 416/1218 (34%), Positives = 638/1218 (52%), Gaps = 142/1218 (11%)
Query: 606 EREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKNDMDE-------PPPLDYG 655
E ++ +KW G SY H +W E L+ + L N+++K D + P ++Y
Sbjct: 304 EIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYF 363
Query: 656 SGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKK----GNYHYLVK 711
+ + + S+ K Y +E +K T+ + + +K YL K
Sbjct: 364 NCQQELASELNK----QYQIVERV---IAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCK 416
Query: 712 WRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPS 771
W LPY + +WE++ + +++ S+ H P + K K++
Sbjct: 417 WMGLPYSECSWEDEALIGKKFQNCIDSF--HSRNNSKTIPTRECKALKQRPRF------- 467
Query: 772 SPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTI 831
V + QP ++ L YQLEGLNWL SW + ILADEMGLGKTIQTI
Sbjct: 468 -------VALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTI 520
Query: 832 VFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS 891
FL L+ + GPFL+ PLST+ +W+REF++WAP+ VV Y GD SR IRE E+
Sbjct: 521 SFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWI 580
Query: 892 FEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQ 951
++KF+ L+T+YE++ D+ LGSI WA L VDEAHRLKN+
Sbjct: 581 HSQTK--------------RLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDD 626
Query: 952 SKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ 1011
S ++ L +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F E F E+ +E+
Sbjct: 627 SLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-GRENG 685
Query: 1012 IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG 1071
+ LH +L P +LRR+K DV K++PAK E I+RVE+S +QK+YYK+ILTRN++AL
Sbjct: 686 YQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTR 745
Query: 1072 GNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1131
G+ LNI+M+LKKCCNH YL + E + +G +LI+SSGKL+LL K+L +L
Sbjct: 746 GSTSGFLNIVMELKKCCNHCYL--IKPPEENERENGQEILLSLIRSSGKLILLDKLLTRL 803
Query: 1132 KEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCF 1191
+E+G+RVLIFSQM +MLD+L ++L + Y ++R+DG I G +R++A+D FNA G++ FCF
Sbjct: 804 RERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF 863
Query: 1192 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEE 1251
LLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ +V IYR VT+ +VEE
Sbjct: 864 LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEE 923
Query: 1252 RITQVAKRKMMLTHLVV-------RPGLGSKAG-----SMSKQELDDILKFGTEELFKDE 1299
I + AK+KM+L HLV+ R L + +G +K+EL ILKFG E+LFK E
Sbjct: 924 EIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFK-E 982
Query: 1300 NEGENKEEDSSVIHYDNEAIARLLD--RNQDATEDTDVQNMNEYLSSFKVAQYVVREEDK 1357
EGE E D + I RL + N+ +T TD E LS FKVA + E++
Sbjct: 983 LEGEESEPQ----EMDIDEILRLAETRENEVSTSATD-----ELLSQFKVANFATMEDE- 1032
Query: 1358 IEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDA-AQEDQ 1416
EE+E K + + P+ K + Q++ + L + + K+ ND+ + +
Sbjct: 1033 -EELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTES 1091
Query: 1417 DNQSEYSVGSEEEDEDFDERPEGRRQSK-RQLRNEKDKPLPPLLARVGGNIEVLGFNTRQ 1475
Q++ S SE E ED D+ + +R+ + R +R + V GF +
Sbjct: 1092 KRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDL----------------VEGFTDAE 1135
Query: 1476 RKAFLNAVMRWGMP-------PQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGAD 1528
+ F+ A ++G+P +DA V DL+ E + VS + + +
Sbjct: 1136 IRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKEN 1195
Query: 1529 GSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSS 1588
SE G R G + + ++ V S+++ + +EFE ++ + DP + K+
Sbjct: 1196 ASEGKGPG-KRRGPTIKISGVQVNVKSIIQHE-EEFEMLH-----KSIPVDP--EEKKKY 1246
Query: 1589 RASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAE-----NQEEKPE 1643
+ K + E + E I+T E + + ++KP+
Sbjct: 1247 CLTCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQ 1306
Query: 1644 KNSRIGEKMETEAD----------APSPAPSLGE--RLEPRK--IPLEDEVPGVPGEMEP 1689
G++++T AD A + GE +L+ RK + E++VP + E
Sbjct: 1307 -----GKQLQTRADYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGI 1361
Query: 1690 EPGYRGDREKSATESTPGERGEEK-PL-DGQEHRERPEGETGDLGKREDVKGDRELRPG- 1746
E + + E + G EK P+ Q+ +E E + + R+D +GD+E +
Sbjct: 1362 ELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1421
Query: 1747 -PRDEPRSNGRREEKTEK 1763
+++P+S + K
Sbjct: 1422 DKKEKPKSGDAKSSSKSK 1439
Score = 43.1 bits (100), Expect = 0.003
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 107 KKRKRGPKKQKENKPGKPRKR--------KKRDSEEEFGSERDEYREKS---------ES 149
K +KR P+ +KENK + ++ + D+ E G +D+ EKS E+
Sbjct: 1338 KLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKEN 1397
Query: 150 GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHV 209
++ RK + +E+K+ K K+ K GD ++S + +T G E V
Sbjct: 1398 KENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEPVPIG 1457
Query: 210 FSEEDYHTLTNYKAFSQFMRPL 231
E+D + + MRP+
Sbjct: 1458 EDEDDDLDQETFSICKERMRPV 1479
Score = 36.2 bits (82), Expect = 0.34
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 19/194 (9%)
Query: 1583 DSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKP 1642
DS S ASS + + EAS ++S S+ + G G + E +E+Q E
Sbjct: 12 DSSLHSNASSHSASE----EASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSES- 66
Query: 1643 EKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPG-----EMEPEPGYRGDR 1697
E S + +A S ER+ K + +E P V G EP +
Sbjct: 67 ESESAGSKSQPVLPEAKEKPASKKERIADVK-KMWEEYPDVYGVRRSNRSRQEPSRFNIK 125
Query: 1698 EKSATES---TPGERGEEKPLDGQEHRERP---EGETGDLGKRE-DVKGDRELRPGP-RD 1749
E++++ S +P RG+ + ++ ++ P E E G + E + K + RP P R
Sbjct: 126 EEASSGSESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRT 185
Query: 1750 EPRSNGRREEKTEK 1763
P+ +++ KT++
Sbjct: 186 VPKPRVKKQPKTQR 199
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 578 EPPVAVPAPQQADGNPDVPP-PRPLQGRSEREFFVKWVGLSYWHCSWAKE 626
E +AV + G D P R +E E+ KW+GL Y CSW E
Sbjct: 381 ERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDE 430
Score = 33.1 bits (74), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 1799 WHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANK---GNFLEMKNKFLARR 1855
W D LL GI HGY W+ I+ D + + ++ E +K G L+ + +L
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYL--- 1317
Query: 1856 FKLLEQAL 1863
KLL + L
Sbjct: 1318 LKLLRKGL 1325
Score = 32.7 bits (73), Expect = 3.8
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 10/174 (5%)
Query: 20 EEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSPPGCHLFPPPPPP 79
+EE+ + E A D E G PG G + +S
Sbjct: 9 QEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESES 68
Query: 80 PPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSE 139
P P K+ K+R KK E P R+ S +E
Sbjct: 69 ESAGSKSQPVLPEAKE------KPASKKERIADVKKMWEEYPDVYGVRRSNRSRQE--PS 120
Query: 140 RDEYREKSESGGSEYGTGPGRKRRR-KHREKKEKKTKRRKKGEGDGGQKQVEQK 192
R +E++ SG SE G+ R +R+ K +EK +++ ++ +G + + EQK
Sbjct: 121 RFNIKEEASSG-SESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQK 173
Score = 31.6 bits (70), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 703 KGNYHYLVKWRDLPYDQSTWEEDE 726
+G YL+KW+ Y STWE +E
Sbjct: 302 EGEIQYLIKWKGWSYIHSTWESEE 325
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 566 bits (1458), Expect = e-161
Identities = 358/927 (38%), Positives = 527/927 (56%), Gaps = 105/927 (11%)
Query: 588 QADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLE---IFHLVMYRNYQRKN 644
+ADG+P+ + + E ++ +KW G S+ H +W E L+ + + NY++K+
Sbjct: 298 EADGDPNAGFEKNKEP-GEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD 356
Query: 645 DMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRF------GIKPEWMTVHRIINH 698
+ KR +K+ ++E YY + ++ V RII H
Sbjct: 357 -----------------QETKRWLKNASPEDVE--YYNCQQELTDDLHKQYQIVERIIAH 397
Query: 699 SVDKK--GNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRK 756
S K G Y KW+ LPY + +WE+ + +++ Y+ + P + K
Sbjct: 398 SNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQ--SKTTPFKDCK 455
Query: 757 YKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGT-LHMYQLEGLNWLRFSWAQGTD 815
K++ V + QP +I G L YQL GLNWL SW +G
Sbjct: 456 VLKQRPRF--------------VALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNS 501
Query: 816 TILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTY 875
ILADEMGLGKTIQTI FL L+ E GPFL+ PLST+ +W+RE Q WA + V Y
Sbjct: 502 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVY 561
Query: 876 TGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIR 935
GD +SR +IR +E++ ++KF++LLT+YE++ D+A LG +
Sbjct: 562 LGDINSRNMIRTHEWTHHQTK--------------RLKFNILLTTYEILLKDKAFLGGLN 607
Query: 936 WACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNN 995
WA + VDEAHRLKN+ S ++ L +K +H+LL+TGTPLQN+L+EL+ LL+F+ PE+F++
Sbjct: 608 WAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSS 667
Query: 996 LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYY 1055
E F EE +E LH L P +LRR+K DV K++PAK E I+R+E+S +QK+YY
Sbjct: 668 WEDFEEEHGK-GREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYY 726
Query: 1056 KYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALI 1115
K+ILTRN++AL+ G+ LNIMM+LKKCCNH YL + ++ + + LI
Sbjct: 727 KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYL--IKPPDNNEFYNKQEALQHLI 784
Query: 1116 KSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQ 1175
+SSGKL+LL K+L +L+E+G+RVLIFSQM +MLD+L ++L Y + ++R+DG I G LR+
Sbjct: 785 RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRK 844
Query: 1176 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQA 1235
+A+D FNA G++ FCFLLSTRAGGLGINLA+ADTV+IFDSDWNP ND+QA +RAHRIGQ
Sbjct: 845 QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK 904
Query: 1236 NKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR------------PGLGSKAGSMSKQE 1283
+V IYR VT+ SVEE I + AK+KM+L HLV++ S + +K+E
Sbjct: 905 KQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEE 964
Query: 1284 LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLS 1343
L ILKFG EELFK E EGE +E D + I + + +++ E + +E LS
Sbjct: 965 LSAILKFGAEELFK-EPEGEEQEPQ----EMDIDEILKRAETHEN--EPGPLTVGDELLS 1017
Query: 1344 SFKVAQYVVREEDKIE-EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1402
FKVA + +ED IE E ER EE + D +L +++ E++ L + +
Sbjct: 1018 QFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM-LPRMRNC 1076
Query: 1403 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1462
KQ+++N E + ++S GS D D EG+R KR + + +P
Sbjct: 1077 AKQISFN--GSEGRRSRSRRYSGS-----DSDSISEGKRPKKR----GRPRTIP------ 1119
Query: 1463 GGNIEVLGFNTRQRKAFLNAVMRWGMP 1489
+ GF+ + + F+ + ++G P
Sbjct: 1120 --RENIKGFSDAEIRRFIKSYKKFGGP 1144
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 526 bits (1354), Expect = e-148
Identities = 342/868 (39%), Positives = 471/868 (54%), Gaps = 126/868 (14%)
Query: 608 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 667
EF+VK+ SY HC WA LE + + + K ++
Sbjct: 825 EFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFK---------------------AKQ 863
Query: 668 VKDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGN--YHYLVKWRDLPYDQSTWE 723
++ +E+E++ + P+++ V RI++ S D +G HYLVKW LPY+ STWE
Sbjct: 864 GQNKFLSEIEDELFN----PDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWE 919
Query: 724 E----DEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTV 779
D+ I E+E+ +M +P R + P D
Sbjct: 920 RRQDIDQAKIEEFEK-----------LMSREPETERVER--------------PPADDWK 954
Query: 780 KYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYK 839
K E+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FLY +Y
Sbjct: 955 KSESSREY--KNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYL 1012
Query: 840 EGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NA 896
+G GPFLV APLSTI NWEREF+ W + VV Y G + SR I+ E F+D
Sbjct: 1013 KG-IHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRV 1070
Query: 897 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 956
IKG KFH ++T++E+I D L +I W C+V+DEAHRLKN K
Sbjct: 1071 IKGS-----------YKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLE 1119
Query: 957 VLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLH 1016
L ++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL
Sbjct: 1120 GLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQ 1179
Query: 1017 DLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG-GNQV 1075
+L P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L+ GG N
Sbjct: 1180 AILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVP 1239
Query: 1076 SLLNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKML 1128
+LLN MM+L+KCCNHPYL A E+ S ++ A+I+++GKL+L+ K+L
Sbjct: 1240 NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLL 1299
Query: 1129 RKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ 1188
KLK GHRVLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +
Sbjct: 1300 PKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDR 1359
Query: 1189 FCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRAS 1248
F FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V IYR +TR S
Sbjct: 1360 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNS 1419
Query: 1249 VEERITQVAKRKMMLTHLVVRPGLGSKAGS-----MSKQELDDILKFGTEELFKDENEGE 1303
E + A K+ L V++ G + + +SK+E++D+L+ G DE +
Sbjct: 1420 YEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1479
Query: 1304 NK--EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEI 1361
+K EED I LL R T +++ + S+F A +V +
Sbjct: 1480 SKFCEEDIDQI---------LLRRTHTITIESEGKG-----STFAKASFVASGNRTDISL 1525
Query: 1362 EREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK------RVRKQVNYNDAAQED 1415
+ DP++W+K + + + D+ G+ RVRKQ A +ED
Sbjct: 1526 D----------DPNFWQKWAK----KAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571
Query: 1416 QDNQ-SEYSVGSEEEDEDFDERPEGRRQ 1442
+ + S+ SEE+ RP+ + Q
Sbjct: 1572 ELMEFSDLESDSEEKPCAKPRRPQDKSQ 1599
Score = 39.7 bits (91), Expect = 0.031
Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 17/210 (8%)
Query: 1585 KRSSRASSPTKTSPTTPEASATNSPCTSK-PATPA-PSEKGEGIRTPLEKEEAENQEEKP 1642
K+ S+A K E P T K P P P EK TP K ++ +KP
Sbjct: 644 KKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP 703
Query: 1643 EKN-SRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1701
+ S + +K+ S L + P P EDE PGV + R + K
Sbjct: 704 DSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGV----QKRRSSRQVKRKRY 759
Query: 1702 TESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRDE----PRSNGRR 1757
TE + +E+ D T ++E V + GP E RS ++
Sbjct: 760 TEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDAE-----GPVVEKIMSSRSVKKQ 814
Query: 1758 EEKTEKPRF-MFNIADGGFTELHTLWQNEE 1786
+E E+ F + F+ LH W + E
Sbjct: 815 KESGEEVEIEEFYVKYKNFSYLHCQWASIE 844
Score = 33.5 bits (75), Expect = 2.2
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 74 PPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRK-----RK 128
P P P P P P I P K PK K++ KP +K
Sbjct: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKK 712
Query: 129 KRDSEEEFGSERDEY-REKSESGGSEYGTGPGRKRRRKHREKKEKK 173
K + + GSE + + S E PG ++RR R+ K K+
Sbjct: 713 KVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKR 758
Score = 32.7 bits (73), Expect = 3.8
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 313 PIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRK---KGGSYV 369
P + KE K P + K+P++P K+ + K P K K +K + +
Sbjct: 653 PKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATP-KPKSSKKSSNKKPDSEASALK 711
Query: 370 FQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEE 429
+ ++G +E SDLD S D +K + R ++K+ +EE
Sbjct: 712 KKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 771
Query: 430 VDGYETDHQD 439
D + +D
Sbjct: 772 ADDADAAGRD 781
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 514 bits (1325), Expect = e-145
Identities = 341/875 (38%), Positives = 472/875 (53%), Gaps = 126/875 (14%)
Query: 608 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 667
EFFVK+ SY HC WA QLE + + + K M
Sbjct: 388 EFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKM--------------------- 426
Query: 668 VKDPHYAEMEEKYYRFGIKPEWMTVHRII--NHSVDKKGN---YHYLVKWRDLPYDQSTW 722
+ H+ +E+ + P+++ V RI+ +HS+DK +YLVKW LPY+ STW
Sbjct: 427 AQMRHFFHEDEEPF----NPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTW 482
Query: 723 E-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKY 781
E +++++ + E K+ RH EL + +P+ KK EL + Y
Sbjct: 483 ELKEDVDEGKIREFKRIQSRHPEL---KRVNRPQASAWKKLELSHE-------------Y 526
Query: 782 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 841
+ + L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL +Y G
Sbjct: 527 KNR--------NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVG 578
Query: 842 HTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGK 901
GPFLV APLSTI NWEREF W + + Y G SR +I++ E +D+ +
Sbjct: 579 -IHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIP 636
Query: 902 KAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 961
A+ KF L+T++E+I D L I W C+++DEAHRLKN K L
Sbjct: 637 GAY--------KFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM 688
Query: 962 KIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGP 1021
++HK+LLTGTPLQN +EELF LL+FL P +F + FL++F D+ E+Q++KL +L P
Sbjct: 689 DLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKP 748
Query: 1022 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG--NQVSLLN 1079
MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L S+G G N +LLN
Sbjct: 749 MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL-SKGAGHTNMPNLLN 807
Query: 1080 IMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1132
MM+L+KCCNHPYL A E+ + + A+++S+GKL+L+ K+L KLK
Sbjct: 808 TMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLK 867
Query: 1133 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFL 1192
GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF+ P + +F FL
Sbjct: 868 AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 927
Query: 1193 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1252
L TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 928 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 987
Query: 1253 ITQVAKRKMMLTHLVV-----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENK-- 1305
+ A K+ L V+ R G + SK+E++D+L+ G +E++ +K
Sbjct: 988 MFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC 1047
Query: 1306 EEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1365
EED I LL R T +++ + S+F A +V E ++
Sbjct: 1048 EEDIDQI---------LLRRTTTITIESEGKG-----STFAKASFVASENRTDISLD--- 1090
Query: 1366 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGK--------RVRKQVNYNDAAQEDQD 1417
DP++W+K + + DL +L K RVRKQ + ++D
Sbjct: 1091 -------DPNFWQKWAK------KADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDD-- 1135
Query: 1418 NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ S+ E ED DERP RR + D
Sbjct: 1136 ---DLVEFSDLESED-DERPRSRRHDRHHAYGRTD 1166
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 514 bits (1325), Expect = e-145
Identities = 349/950 (36%), Positives = 497/950 (52%), Gaps = 131/950 (13%)
Query: 609 FFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKV 668
F+VK+ SY HC WA +LE + + + +N + +
Sbjct: 318 FYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHI---------------- 361
Query: 669 KDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGNY---HYLVKWRDLPYDQSTWE 723
+ E +E + P+++ V RI+ H+ D + HYLVKW LPY++STWE
Sbjct: 362 ----FTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWE 413
Query: 724 EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYET 783
+E DPA+ ++++ + L P +D K E
Sbjct: 414 LEE---------------------DVDPAKVKEFESLQV-LPEIKHVERPASDSWQKLEK 451
Query: 784 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 843
+ L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL ++ G
Sbjct: 452 SREY--KNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-I 508
Query: 844 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NAIKGG 900
GPFL+ APLSTI NWEREF+ W + + Y G + SR +I++ E + D N + G
Sbjct: 509 HGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 566
Query: 901 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 960
KFHV++T++E+I D L I W+C+++DEAHRLKN K L
Sbjct: 567 ----------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL 616
Query: 961 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 1020
++HK+LLTGTPLQN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L
Sbjct: 617 MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILK 676
Query: 1021 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLN 1079
P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L N +L+N
Sbjct: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736
Query: 1080 IMMDLKKCCNHPYLFPVAAME---------SPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
MM+L+KCCNHPYL A + SP P ++ A+I+++GKL+L+ K+L K
Sbjct: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPK 794
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF P + +F
Sbjct: 795 LIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 855 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 914
Query: 1251 ERITQVAKRKMMLTHLVV----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE 1306
+ A K+ L V+ R G + +SK E++D+L+ G DE + +K
Sbjct: 915 REMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK- 973
Query: 1307 EDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREII 1366
+ E I ++L R T +Q+ + S+F A +V ++
Sbjct: 974 -------FCEEDIDQILQRR---THTITIQSEGKG-STFAKASFVASGNRTDISLD---- 1018
Query: 1367 KQEENVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSE 1421
DP++W+K L + ++E L + RVRKQ + ++ +ED+ E
Sbjct: 1019 ------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDE--LME 1067
Query: 1422 YSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1481
+S E D D DERP R+L ++ + L RV N+ + G+ R + +
Sbjct: 1068 FS----ELDSDSDERP----TRSRRLNDKARRYLRAECFRVEKNLLIFGWG-RWKDILTH 1118
Query: 1482 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKA--YVSLFMRHLCEPGADG 1529
+W + +D + + R L K +K + F+ L P DG
Sbjct: 1119 GRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDG 1165
Score = 33.1 bits (74), Expect = 2.9
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 108 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYG--------TGPG 159
KRKR PK+ KE + K K+ K E + + R+ E+ G++ +
Sbjct: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAAR 178
Query: 160 RKRRRKHREKKEKKTKRRKKGE 181
K R+ +E+ +++KKG+
Sbjct: 179 TKSRKASKEQGPTPVEKKKKGK 200
Score = 31.6 bits (70), Expect = 8.4
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 108 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 167
++ + PKK KE+K K + K+ + S E +EK S T + + +
Sbjct: 131 RKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGP 190
Query: 168 EKKEKKTKRRKKGE 181
EKK K ++K E
Sbjct: 191 TPVEKKKKGKRKSE 204
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 505 bits (1300), Expect = e-142
Identities = 333/864 (38%), Positives = 474/864 (54%), Gaps = 118/864 (13%)
Query: 608 EFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRK 667
EFFVK+ SY HC WA E QL + + Q+K + R+
Sbjct: 715 EFFVKYKNYSYLHCEWATEEQL-----LKDKRIQQKIK----------------RFKLRQ 753
Query: 668 VKDPHY-AEMEEKYYRFGIKPEWMTVHRIINHSV--DKKGN---YHYLVKWRDLPYDQST 721
+ H+ A+MEE+ + P+++ V R++ S DK +YLVKW LPY+ ST
Sbjct: 754 AQRAHFFADMEEEPFN----PDYVEVDRVLEVSFCEDKDTGEPVIYYLVKWCSLPYEDST 809
Query: 722 WE-EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTN--DPT 778
WE ++++++ + EE +Q + P R D PPS+ D +
Sbjct: 810 WELKEDVDLAKIEEFEQ--------LQASRPDTRRL----------DRPPSNIWKKIDQS 851
Query: 779 VKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLY 838
Y+ G L YQLEGLNWL F+W + ILADEMGLGKTIQ+I FLY +
Sbjct: 852 RDYKN--------GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL 903
Query: 839 KEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 898
G +GPFL+ APLSTI NWEREF+ W VV Y G SR +I++ E F D+ +
Sbjct: 904 LTG-IRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGR 961
Query: 899 GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 958
+ A++ F ++T++E+I L +I W C+++DEAHRLKN K L
Sbjct: 962 IIRGAYR--------FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGL 1013
Query: 959 NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDL 1018
++HK+LLTGTPLQN +EELF LL+FL P RF + F++EF D+ E+Q++KL +
Sbjct: 1014 KLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAI 1073
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV-SL 1077
L P MLRRLK DV K + K E I+ VEL+ +QKKYY+ IL +NF L+ G V +L
Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
Query: 1078 LNIMMDLKKCCNHPYLFPVAA-------MESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+N MM+L+KCCNHPYL A ++ + + A+I+S+GKL+L+ K+L K
Sbjct: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
+K GH+VLIFSQM + LD+LED+L ++ Y YERIDG + G LRQ AIDRF+ P + +F
Sbjct: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 1253
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ V +YR VTR S E
Sbjct: 1254 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYE 1313
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAG-----SMSKQELDDILKFGT-EELFKDENEGEN 1304
+ A K+ L V++ G ++ +SK+E++D+L+ G + ++E+EG
Sbjct: 1314 REMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSK 1373
Query: 1305 -KEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIER 1363
EED I LL R + T +++ + S+F A +V ++
Sbjct: 1374 FCEEDIDQI---------LLRRTKTITIESEGRG-----STFAKASFVASGNRTDISLD- 1418
Query: 1364 EIIKQEENVDPDYWEKLLRHHYEQQQEDLARN--LGKGKRVRKQVNYNDAAQEDQDNQSE 1421
DP++W+K + + RN + R+RKQ A +++ S
Sbjct: 1419 ---------DPNFWQKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRPFSATKDELAELS- 1468
Query: 1422 YSVGSEEEDEDFDERPEGRRQSKR 1445
E + + DE+P+ RR R
Sbjct: 1469 ------EAESEGDEKPKLRRPCDR 1486
Score = 32.3 bits (72), Expect = 4.9
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 1575 ELMPDPSADSKRSSRASSPTKTSPTTP-------EASATNSPCTSKPATPAPSEKGEGIR 1627
E D +DS+RSS +S + +S ++ +S+++S C+S ++ + S
Sbjct: 2129 ESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSS 2188
Query: 1628 TPLEKEEAENQEEKPEK 1644
+ EE+++ EE+ +K
Sbjct: 2189 SSSSSEESDSDEEEAQK 2205
Score = 31.6 bits (70), Expect = 8.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 1274 SKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDT 1333
S + S S +EE DE E + +E + + YD E++A L QD T+D+
Sbjct: 2175 SSSSSSSTSSSSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVAS-LSTTQDETQDS 2233
Query: 1334 DVQN 1337
N
Sbjct: 2234 FQMN 2237
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 444 bits (1141), Expect = e-124
Identities = 275/798 (34%), Positives = 436/798 (54%), Gaps = 65/798 (8%)
Query: 743 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 802
+ LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G
Sbjct: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190
Query: 803 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 862
LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E
Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
Query: 863 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 922
F+ W P V+ + GDKD+RA D + G ++ V +TSYE
Sbjct: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291
Query: 923 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 982
++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+
Sbjct: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
Query: 983 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 1039
LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K
Sbjct: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
Query: 1040 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1099
E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A
Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469
Query: 1100 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1159
P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G
Sbjct: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526
Query: 1160 YKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNP 1219
Y+Y R+DG R+EAI+ FNAP + +F F+LSTRAGGLGINLA+AD VI++DSDWNP
Sbjct: 527 YEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 586
Query: 1220 HNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG 1277
D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V++ G + ++
Sbjct: 587 QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN 646
Query: 1278 SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN 1337
++K+E+ +++ G +F + E+ ++++ + A + +R Q E +
Sbjct: 647 KLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGE----SS 702
Query: 1338 MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR--- 1394
+ + + + Y ED E++ + E ++P E+ + + + R
Sbjct: 703 LRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSE 759
Query: 1395 -NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDEDFDERPEGRRQS 1443
+ K R KQ N D E + ++G + + D +R+
Sbjct: 760 PKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREE 819
Query: 1444 KRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGMPPQDAFTTQWLV 1500
++++ + +PL P + GF R F+ A ++G D +
Sbjct: 820 QKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDN-----IA 872
Query: 1501 RDLRGKTEKEFKAYVSLF 1518
R++ GK+ +E Y ++F
Sbjct: 873 REVEGKSPEEVMEYSAVF 890
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 435 bits (1118), Expect = e-121
Identities = 275/810 (33%), Positives = 436/810 (53%), Gaps = 77/810 (9%)
Query: 743 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 802
+ LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G
Sbjct: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190
Query: 803 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 862
LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E
Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
Query: 863 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 922
F+ W P V+ + GDKD+RA D + G ++ V +TSYE
Sbjct: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291
Query: 923 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 982
++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+
Sbjct: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
Query: 983 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 1039
LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K
Sbjct: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
Query: 1040 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1099
E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A
Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469
Query: 1100 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1159
P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G
Sbjct: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526
Query: 1160 YKYERIDGGITGALRQ------------EAIDRFNAPGAQQFCFLLSTRAGGLGINLATA 1207
Y+Y R+DG R+ EAI+ FNAP + +F F+LSTRAGGLGINLA+A
Sbjct: 527 YEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASA 586
Query: 1208 DTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1267
D VI++DSDWNP D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V
Sbjct: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646
Query: 1268 VRPG--LGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDR 1325
++ G + ++ ++K+E+ +++ G +F + E+ ++++ + A + +R
Sbjct: 647 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706
Query: 1326 NQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHY 1385
Q E ++ + + + Y ED E++ + E ++P E+ +
Sbjct: 707 LQKMGE----SSLRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAV 759
Query: 1386 EQQQEDLAR----NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDE 1431
+ + R + K R KQ N D E + ++G + +
Sbjct: 760 DAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP 819
Query: 1432 DFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGM 1488
D +R+ ++++ + +PL P + GF R F+ A ++G
Sbjct: 820 DIPNPALAQREEQKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGR 877
Query: 1489 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLF 1518
D + R++ GK+ +E Y ++F
Sbjct: 878 DDIDN-----IAREVEGKSPEEVMEYSAVF 902
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 422 bits (1085), Expect = e-117
Identities = 276/794 (34%), Positives = 422/794 (53%), Gaps = 79/794 (9%)
Query: 757 YKKKKKELQGDGP---PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQG 813
Y+ ++ E + D SS + ++E P ++ G L YQ+ GLNWL + G
Sbjct: 141 YRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENG 198
Query: 814 TDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVV 873
+ ILADEMGLGKT+QTI L + + GP +V P ST+ NW EF+ W P V
Sbjct: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSV 258
Query: 874 TYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGS 933
GDK+ RA +F + + G+ + V +TSYE++ +++
Sbjct: 259 CLIGDKEQRA-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKK 299
Query: 934 IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 993
W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ LLNFL P+ F
Sbjct: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
Query: 994 NNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM 1050
N+ + F F + + +++LH +L P +LRR+KADV K++P K E+ + V LS M
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
Query: 1051 QKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYE 1110
Q+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + +
Sbjct: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH- 477
Query: 1111 GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGIT 1170
L+ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + Y+Y R+DG
Sbjct: 478 ---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTP 534
Query: 1171 GALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAH 1230
RQ++I+ +N P + +F F+LSTRAGGLGINLATAD VI++DSDWNP D+QA RAH
Sbjct: 535 HDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 594
Query: 1231 RIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAGSMSKQELDDIL 1288
RIGQ V ++RF+T +VEERI + A+ K+ L +V++ G + + K E+ ++
Sbjct: 595 RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
Query: 1289 KFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF--- 1345
+ G +F + E E +ED I +L+R T + MNE LS
Sbjct: 655 RHGATHVFASK-ESEITDED----------IDGILERGAKKTAE-----MNEKLSKMGES 698
Query: 1346 KVAQYVVREEDKIEEIEREIIKQEEN------VDPDYWEKLLRHHYEQQQEDLAR----N 1395
+ + + E + E E ++++ ++P E+ + + + R
Sbjct: 699 SLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPK 758
Query: 1396 LGKGKRVRKQVNYND----AAQEDQDNQSEYSVGSEEEDEDFDERPE----GRRQSKRQL 1447
K R KQ N D + + + E + PE + Q + QL
Sbjct: 759 APKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQL 818
Query: 1448 RNEKDKPLPPLLARVGGNIEVLGF---NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLR 1504
+ ++ + L + GF N R F+ A +WG + + R++
Sbjct: 819 KIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRD-----DIENIAREVE 873
Query: 1505 GKTEKEFKAYVSLF 1518
GKT +E Y ++F
Sbjct: 874 GKTPEEVIEYSAVF 887
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 410 bits (1053), Expect = e-114
Identities = 257/667 (38%), Positives = 376/667 (56%), Gaps = 47/667 (7%)
Query: 791 TGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVS 850
TG L YQLEG+NWL + IL DEMGLGKT QTI L + +GPFL+
Sbjct: 42 TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLIL 101
Query: 851 APLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 910
PLS + NW+ E Q +AP VTY GDK+ RA ++++ +K+E+
Sbjct: 102 CPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD-----------------LKQES 144
Query: 911 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 970
+FHVLLT+YE+ D + L S W+ LVVDEAHRLKN S + L+ + + LLLT
Sbjct: 145 --RFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLT 202
Query: 971 GTPLQNNLEELFHLLNFLTPERFNNLE--GFLEEFADISKEDQ-IKKLHDLLGPHMLRRL 1027
GTP+QN+L+EL+ LL+F+ P+ F+ E F++ + DI KE + +LH LL P +LRR+
Sbjct: 203 GTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRV 262
Query: 1028 KADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKC 1087
KA+V +P KTE+++ +S +QKKYYK IL ++ +A + +V L NI+ L+KC
Sbjct: 263 KAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETA-KKVKLQNILSQLRKC 321
Query: 1088 CNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKM 1147
+HPYLF E ++ G L ++SGKL LL K+L L GHRVL+FSQMT+M
Sbjct: 322 VDHPYLFDGVEPEPFEV------GDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQM 375
Query: 1148 LDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQ-FCFLLSTRAGGLGINLAT 1206
LD+L+D++DY GY YER+DG + G R AI F G Q F FLLSTRAGG+G+NL
Sbjct: 376 LDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF---GQQPIFVFLLSTRAGGVGMNLTA 432
Query: 1207 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1266
ADTVI DSD+NP ND+QA +RAHRIGQ V + R + R +VEE + + A K+ LT++
Sbjct: 433 ADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNM 492
Query: 1267 VVRPG---LGS-KAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVI--HYDNEAIA 1320
++ G LG+ K + + +L +ILKFG ++L E ++ + S++ D + ++
Sbjct: 493 IIEGGHFTLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVS 552
Query: 1321 RLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKL 1380
L + + D + + YL K +ED R+ +Q N+ EK
Sbjct: 553 DALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKED------RKSFEQLVNLQKTLLEKA 606
Query: 1381 LRHHYEQQQED--LARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPE 1438
+ + + L L +G RK+V + ++ Q + E + E+ + E
Sbjct: 607 SQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKE 666
Query: 1439 GRRQSKR 1445
K+
Sbjct: 667 EAEHKKK 673
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 407 bits (1045), Expect = e-113
Identities = 306/957 (31%), Positives = 463/957 (48%), Gaps = 120/957 (12%)
Query: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1308
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1309 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1365
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1366 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1425
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362
Query: 1426 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1485
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412
Query: 1486 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1545
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1466
Query: 1546 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1605
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1467 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1521
Query: 1606 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1665
S TS +R +EKE+ EE E+ E E+E+ + L
Sbjct: 1522 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1568
Query: 1666 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1722
G RK +D + G G P RG R K E +E+ G E
Sbjct: 1569 G-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1615
Score = 38.5 bits (88), Expect = 0.069
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1453 KPLP 1456
P P
Sbjct: 690 IPDP 693
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
E+E++ E SEEEEE EEEG E E V+
Sbjct: 1534 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1563
Score = 32.0 bits (71), Expect = 6.4
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
Query: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 405 bits (1040), Expect = e-112
Identities = 306/957 (31%), Positives = 461/957 (48%), Gaps = 123/957 (12%)
Query: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1308
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1309 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1365
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1366 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1425
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358
Query: 1426 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1485
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409
Query: 1486 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1545
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY 1463
Query: 1546 QVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASA 1605
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1464 YELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIV 1518
Query: 1606 TNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSL 1665
S TS +R +EKE+ EE E+ E E+E+ + L
Sbjct: 1519 LQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKL 1565
Query: 1666 GERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1722
G RK +D + G G P RG R K E +E+ G E
Sbjct: 1566 G-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1612
Score = 38.5 bits (88), Expect = 0.069
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1453 KPLP 1456
P P
Sbjct: 690 IPDP 693
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
E+E++ E SEEEEE EEEG E E V+
Sbjct: 1531 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1560
Score = 32.0 bits (71), Expect = 6.4
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
Query: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 403 bits (1035), Expect = e-111
Identities = 306/958 (31%), Positives = 463/958 (48%), Gaps = 121/958 (12%)
Query: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1308
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1309 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1365
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1366 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1425
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++ ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKTLKAI- 1362
Query: 1426 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1485
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1363 ---EEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1412
Query: 1486 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1544
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1413 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1466
Query: 1545 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1604
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1467 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1521
Query: 1605 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1664
S TS +R +EKE+ EE E+ E E+E+ +
Sbjct: 1522 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1568
Query: 1665 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1722
LG RK +D + G G P RG R K E +E+ G E
Sbjct: 1569 LG-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1616
Score = 38.5 bits (88), Expect = 0.069
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1453 KPLP 1456
P P
Sbjct: 690 IPDP 693
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
E+E++ E SEEEEE EEEG E E V+
Sbjct: 1535 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1564
Score = 32.0 bits (71), Expect = 6.4
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
Query: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 402 bits (1033), Expect = e-111
Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)
Query: 719 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 764
+S EE + + E +E ++S + E + DP +K K++
Sbjct: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
Query: 765 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 822
G S T + + + GTL YQL+GL W+ + + ILADEM
Sbjct: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
Query: 823 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 882
GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R
Sbjct: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
Query: 883 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 942
+ ++ GK F+VLLT+YE I D+ L IRW ++VD
Sbjct: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
Query: 943 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 1001
E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F +
Sbjct: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
Query: 1002 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 1048
F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S
Sbjct: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
Query: 1049 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1100
+QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E
Sbjct: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
Query: 1101 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1160
+G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + +
Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
Query: 1161 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1220
Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH
Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
Query: 1221 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1280
D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S
Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
Query: 1281 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1335
++ L IL E+E EN+EED D+E + +++ R + D D+
Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
Query: 1336 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1395
E + K ++ E +E+ IIK + V+ R E+++E +
Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
Query: 1396 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1455
G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK
Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
Query: 1456 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1515
++ A R G PP + + K K+ A +
Sbjct: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
Query: 1516 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1575
+ + G SE F R+ L L R V KK++E + S+ +
Sbjct: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
Query: 1576 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1635
L D + + + S ++ S S A E+ E E+EE
Sbjct: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
Query: 1636 ENQEEKPEKNSRIGEKMETEAD 1657
E + E K+ ++ K+ + D
Sbjct: 1507 EEESESEAKSVKVKIKLNKKDD 1528
Score = 37.7 bits (86), Expect = 0.12
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 9 EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSP 67
+EEE E +EEEEEE+EE E E + V+ + +++DD G D+G+ + P
Sbjct: 1490 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDD--------KGRDKGKGKKRP 1540
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 17 VSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGV---LGRGPGHDRGRDR 64
+++EEE E+E +EEEEE DE++ E + + V + D+GRD+
Sbjct: 1488 IAKEEESEDESNEEEEEE-----DEEESESEAKSVKVKIKLNKKDDKGRDK 1533
Score = 32.0 bits (71), Expect = 6.4
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 3 SPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEE 45
+P D EE + + EEE+EEEE +E EE D + EE
Sbjct: 630 APRSDSEESDSDY----EEEDEEEESSRQETEEKILLDPNSEE 668
Score = 32.0 bits (71), Expect = 6.4
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 6 RDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGR 62
++EE E+E EEE+EEE E + + + ++ D++ D+G + P + +
Sbjct: 1490 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAK 1546
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 401 bits (1030), Expect = e-111
Identities = 306/958 (31%), Positives = 461/958 (48%), Gaps = 124/958 (12%)
Query: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEELFKDENEGENKEED 1308
E+I AK K+ + V++ G+ + S ++ L IL E+E +++EED
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAIL----------EHEEQDEEED 1261
Query: 1309 SSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREI 1365
D+E + +++ R++ D D+ E + K ++ E +E+ I
Sbjct: 1262 EVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWI 1314
Query: 1366 IKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVG 1425
IK + V+ R E+++E + G+G R RK+V+Y+D+ E Q ++
Sbjct: 1315 IKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKA----- 1358
Query: 1426 SEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMR 1485
E+ +E E RQ K + ++D + G + +R + +
Sbjct: 1359 --IEEGTLEEIEEEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKK 1409
Query: 1486 WGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSR 1544
G PP + + K+ K V +++ G SE F R+ L
Sbjct: 1410 RGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE 1463
Query: 1545 QQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEAS 1604
L R V KK++E + S+ +L D + + + + S ++
Sbjct: 1464 YYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSI 1518
Query: 1605 ATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPS 1664
S TS +R +EKE+ EE E+ E E+E+ +
Sbjct: 1519 VLQSVFTS-------------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIK 1565
Query: 1665 LGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1722
LG RK +D + G G P RG R K E +E+ G E
Sbjct: 1566 LG-----RKEKAQDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1613
Score = 38.5 bits (88), Expect = 0.069
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1453 KPLP 1456
P P
Sbjct: 690 IPDP 693
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
E+E++ E SEEEEE EEEG E E V+
Sbjct: 1532 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1561
Score = 32.0 bits (71), Expect = 6.4
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
Query: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 401 bits (1030), Expect = e-111
Identities = 269/778 (34%), Positives = 398/778 (51%), Gaps = 98/778 (12%)
Query: 719 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 764
+S EE + + E +E ++S + E + DP +K K++
Sbjct: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
Query: 765 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 822
G S T + + + GTL YQL+GL W+ + + ILADEM
Sbjct: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
Query: 823 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 882
GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R
Sbjct: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
Query: 883 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 942
+ ++ GK F+VLLT+YE I D+ L IRW ++VD
Sbjct: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
Query: 943 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 1001
E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F +
Sbjct: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
Query: 1002 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 1048
F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S
Sbjct: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
Query: 1049 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1100
+QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E
Sbjct: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
Query: 1101 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1160
+G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + +
Sbjct: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
Query: 1161 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1220
Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH
Sbjct: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
Query: 1221 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1280
D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S
Sbjct: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
Query: 1281 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1335
++ L IL E+E EN+EED D+E + +++ R + D D+
Sbjct: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
Query: 1336 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1395
E + K ++ E +E+ IIK + V+ R E+++E +
Sbjct: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
Query: 1396 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDK 1453
G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK
Sbjct: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK 1354
Score = 37.7 bits (86), Expect = 0.12
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 9 EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSP 67
+EEE E +EEEEEE+EE E E + V+ + +++DD G D+G+ + P
Sbjct: 1508 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDD--------KGRDKGKGKKRP 1558
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 17 VSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGV---LGRGPGHDRGRDR 64
+++EEE E+E +EEEEE DE++ E + + V + D+GRD+
Sbjct: 1506 IAKEEESEDESNEEEEEE-----DEEESESEAKSVKVKIKLNKKDDKGRDK 1551
Score = 32.0 bits (71), Expect = 6.4
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 3 SPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEE 45
+P D EE + + EEE+EEEE +E EE D + EE
Sbjct: 630 APRSDSEESDSDY----EEEDEEEESSRQETEEKILLDPNSEE 668
Score = 32.0 bits (71), Expect = 6.4
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 6 RDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGR 62
++EE E+E EEE+EEE E + + + ++ D++ D+G + P + +
Sbjct: 1508 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAK 1564
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 393 bits (1009), Expect = e-108
Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%)
Query: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1294
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
Query: 1295 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1342
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
Query: 1343 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1402
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
Query: 1403 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1462
RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D +
Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419
Query: 1463 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1522
G + +R + + G PP + + K+ K V +++
Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473
Query: 1523 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1581
G SE F R+ L L R V KK++E + S+ +L D
Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530
Query: 1582 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1641
+ + + + S ++ S TS +R +EKE+ EE
Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575
Query: 1642 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1701
E+ E E+E+ + LG RK +D + G G P RG R K
Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625
Query: 1702 TESTPGERGEEKPLDGQEHRE 1722
E +E+ G E
Sbjct: 1626 VSDDDSEEEQEEDRSGSGSEE 1646
Score = 38.5 bits (88), Expect = 0.069
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1453 KPLP 1456
P P
Sbjct: 690 IPDP 693
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
E+E++ E SEEEEE EEEG E E V+
Sbjct: 1565 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1594
Score = 32.0 bits (71), Expect = 6.4
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
Query: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 393 bits (1009), Expect = e-108
Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%)
Query: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1294
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
Query: 1295 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1342
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
Query: 1343 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1402
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
Query: 1403 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1462
RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D +
Sbjct: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419
Query: 1463 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1522
G + +R + + G PP + + K+ K V +++
Sbjct: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473
Query: 1523 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1581
G SE F R+ L L R V KK++E + S+ +L D
Sbjct: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530
Query: 1582 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1641
+ + + + S ++ S TS +R +EKE+ EE
Sbjct: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575
Query: 1642 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1701
E+ E E+E+ + LG RK +D + G G P RG R K
Sbjct: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625
Query: 1702 TESTPGERGEEKPLDGQEHRE 1722
E +E+ G E
Sbjct: 1626 VSDDDSEEEQEEDRSGSGSEE 1646
Score = 38.5 bits (88), Expect = 0.069
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1453 KPLP 1456
P P
Sbjct: 690 IPDP 693
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
E+E++ E SEEEEE EEEG E E V+
Sbjct: 1565 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1594
Score = 32.0 bits (71), Expect = 6.4
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
Query: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 388 bits (997), Expect = e-107
Identities = 310/1006 (30%), Positives = 465/1006 (46%), Gaps = 155/1006 (15%)
Query: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
Query: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
Query: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
Query: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1294
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
Query: 1295 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1342
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
Query: 1343 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1402
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
Query: 1403 RKQVNYNDAAQEDQ-----------DNQSEYSVGSE--------------EEDEDFDERP 1437
RK+V+Y+D+ E Q D S + G + E+ +E
Sbjct: 1374 RKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIE 1433
Query: 1438 EGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQ 1497
E RQ K + ++D + G + +R + + G PP + +
Sbjct: 1434 EEVRQKKSSRKRKRD-------SDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN 1486
Query: 1498 WLVRDLRGKTEKEFKAYVSLFMRHL-CEPGADGSETFADGVPREGLSRQQVLTRIGVMSL 1556
K+ K V +++ G SE F R+ L L R V
Sbjct: 1487 ------PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF- 1539
Query: 1557 VKKKVQEFEHINGRWSMPELMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPAT 1616
KK++E + S+ +L D + + + + S ++ S TS
Sbjct: 1540 --KKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN--LEGSLIYEDSIVLQSVFTS---- 1591
Query: 1617 PAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPL 1676
+R +EKE+ EE E+ E E+E+ + LG RK
Sbjct: 1592 ---------VRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLG-----RKEKA 1637
Query: 1677 EDEVPGVPGEMEPEPGYRGDREKSATESTPGERGEEKPLDGQEHRE 1722
+D + G G P RG R K E +E+ G E
Sbjct: 1638 QDRLKG--GRRRPS---RGSRAKPVVSDDDSEEEQEEDRSGSGSEE 1678
Score = 38.5 bits (88), Expect = 0.069
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
Query: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
Query: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
Query: 1453 KPLP 1456
P P
Sbjct: 690 IPDP 693
Score = 33.9 bits (76), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
E+E++ E SEEEEE EEEG E E V+
Sbjct: 1597 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1626
Score = 32.0 bits (71), Expect = 6.4
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
Query: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 290 bits (742), Expect = 1e-77
Identities = 215/656 (32%), Positives = 322/656 (49%), Gaps = 105/656 (16%)
Query: 770 PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQ 829
P N V ++ F TGG + YQ+EG+ WLR W G + ILADEMGLGKT+Q
Sbjct: 201 PVRKCNGQPVPFQQPKHF---TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257
Query: 830 TIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 889
I + + + G GPFLV PLST+ NW EF+ + P + Y G ++ R + N
Sbjct: 258 CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNI 316
Query: 890 FSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGSIRWACLVVDEAHRLK 948
+ KR+ ++ H V++TS+E+ D+ AL W L+VDE HR+K
Sbjct: 317 Y----------------KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
Query: 949 NNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1008
N + + R L + D+KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+
Sbjct: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITS 419
Query: 1009 -----EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 1054
ED I K LH +L P +LRRLK+DV +P K E++V LS Q+ +
Sbjct: 420 LSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIF 479
Query: 1055 YKYILTRNFEAL-------------------NSRGGGNQVSLLNIMMDLKKCCN--HPYL 1093
Y I+ R + +R N + + +L+K + P +
Sbjct: 480 YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539
Query: 1094 FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKML--------------------RKLKE 1133
A+ +P E +K +MLL+K +L
Sbjct: 540 DRERAVVEVNIP---VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVT 596
Query: 1134 QGHRVLIFSQM--------------TKMLDLLEDFLDY---EGYKYERIDGGITGALRQE 1176
+ LI +M ++M +L+ +DY + + R+DG ++ + R++
Sbjct: 597 NSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREK 656
Query: 1177 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1236
+ FN + F FL+STRAGGLGINL ADTVII+DSDWNP +D+QA R HRIGQ
Sbjct: 657 NMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTK 715
Query: 1237 KVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG-SMSKQELDDILKFGTE 1293
V++YR VT +++++I + A K L L++ G ++G ++SK LD K E
Sbjct: 716 PVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDP--KELME 773
Query: 1294 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQ 1349
L + E E K VI ++ + LLDR+ + + E + FK+ +
Sbjct: 774 LLKSRDYEREIKGSREKVI--SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 271 bits (692), Expect = 6e-72
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)
Query: 794 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 853
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
Query: 854 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 912
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 913 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 969
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 970 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 1019
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1079
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
Query: 1080 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1110
+MM L+K NHP L P +P L E
Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
Query: 1111 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1158
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
Query: 1159 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1218
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
Query: 1219 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1263
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 271 bits (692), Expect = 6e-72
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%)
Query: 794 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 853
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
Query: 854 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 912
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 913 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 969
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 970 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 1019
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1079
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775
Query: 1080 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1110
+MM L+K NHP L P +P L E
Sbjct: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835
Query: 1111 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1158
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895
Query: 1159 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1218
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954
Query: 1219 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1263
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 268 bits (684), Expect = 5e-71
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 78/525 (14%)
Query: 794 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 853
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
Query: 854 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 912
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
Query: 913 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 969
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 970 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 1019
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
Query: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1079
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773
Query: 1080 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1110
+MM L+K NHP L P +P L E
Sbjct: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
Query: 1111 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1158
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
Query: 1159 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1218
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
Query: 1219 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1263
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 261 bits (666), Expect = 7e-69
Identities = 180/543 (33%), Positives = 273/543 (50%), Gaps = 61/543 (11%)
Query: 758 KKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTI 817
K+K+ +L+ D S D K P F+ L YQ G+ WL Q I
Sbjct: 476 KEKRLKLEDDSEESDAEFDEGFKV---PGFLFKK---LFKYQQTGVRWLWELHCQQAGGI 529
Query: 818 LADEMGLGKTIQTIVFLYSL-YKEGHTKG---------PFLVSAPLSTIINWEREFQMWA 867
L DEMGLGKTIQ I FL L Y + T+G P ++ P + + W +EF W
Sbjct: 530 LGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWW 589
Query: 868 PKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITID 927
P F V AI+ E K K+ R+ +L+TSY I +
Sbjct: 590 PPFRV----------AILHETGSYTH--------KKEKLIRDVAHCHGILITSYSYIRLM 631
Query: 928 QAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF 987
Q + W +++DE H+++N + ++ H+++L+G+P+QNNL EL+ L +F
Sbjct: 632 QDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDF 691
Query: 988 LTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRLKADVF 1032
+ P + L F+E+F+ + Q+K L D + P++LRR+K+DV
Sbjct: 692 IFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK 751
Query: 1033 KNM--PAKTELIVRVELSPMQKKYYKYILTRN--FEALNSRGGGNQVSLLNIMMDLKKCC 1088
++ P K E ++ L+ Q K Y+ + + LN ++ + + ++ L+K C
Sbjct: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKIC 806
Query: 1089 NHPYLFPVAAMESPKLPSGAYEGGAL--IKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1146
NHP LF LP E K SGK+++++ +L+ +QG RVL+FSQ +
Sbjct: 807 NHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQ 866
Query: 1147 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1206
MLD+LE FL + Y Y ++DG T A RQ I R+N F FLL+TR GGLG+NL
Sbjct: 867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLGVNLTG 925
Query: 1207 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1266
A+ V+I+D DWNP D QA RA RIGQ +V +YR +T ++EE+I K LT+
Sbjct: 926 ANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNR 985
Query: 1267 VVR 1269
V++
Sbjct: 986 VLK 988
Score = 32.7 bits (73), Expect = 3.8
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 34/156 (21%)
Query: 1610 CTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERL 1669
C + A AP+ P+ + KP K +R+ K E ++L
Sbjct: 290 CNKRAARKAPA--------PVTPPAPVQNKNKPNKKARVLSKKEERLKKHI------KKL 335
Query: 1670 EPRKIPLEDEVPGVPGEMEP-----EPGYRGDREKSATESTPGERGEEKPLDGQEHRERP 1724
+ R + + +V G+P P P GD E +E P E EE E +
Sbjct: 336 QKRALQFQGKV-GLPKARRPWESDMRPEAEGDSEGEESEYFPTEEEEE------EEDDEV 388
Query: 1725 EGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEK 1760
EG DL D EL+P P+ G+R++K
Sbjct: 389 EGAEADLSGDGT---DYELKPLPK-----GGKRQKK 416
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 219 bits (557), Expect = 3e-56
Identities = 171/604 (28%), Positives = 270/604 (44%), Gaps = 119/604 (19%)
Query: 795 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS-LYKEGH----------- 842
L YQ EG +L + G IL D+MGLGKT+Q I FL + L+K+G
Sbjct: 134 LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193
Query: 843 -------------TKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 889
K FL+ APLS + NW+ E W
Sbjct: 194 LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG---------------------- 231
Query: 890 FSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKN 949
F + G +K ++ R Q K + LT+YE + + L S+ W+ ++VDEAHR+KN
Sbjct: 232 -YFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKN 290
Query: 950 NQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 1009
+++ V+ K + ++ LTGT LQNN++EL+ ++++ P + F ++F+D +
Sbjct: 291 PKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH 350
Query: 1010 DQ---------------IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 1054
Q +++L + LRR K + +P K + +V L+ QK
Sbjct: 351 GQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAV 410
Query: 1055 YKYILTRNFEAL-----------------------NSRGGGNQVSLLNIMMDLKKCCNHP 1091
Y+ +L L NS G + L+ + L+K NH
Sbjct: 411 YQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHV 470
Query: 1092 YLFPVAAMES---------------------PKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
L A+ K A+E + K SGK+ +LQ++L
Sbjct: 471 ALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNH 530
Query: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
++ +VL+FS TK+LD+L+ + G Y R+DG R + + FN+ C
Sbjct: 531 CRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC 590
Query: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
L+ST AGGLG+N A+ V++FD WNP ND+QA RA+RIGQ V + R ++ +VE
Sbjct: 591 -LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649
Query: 1251 E--RITQVAKRKMMLTHLVVRPGLGSK----AGSMSKQELDDILKFGTEELFKDENEGEN 1304
E + Q+ K+++ H VV +K A SK+ ++ FG LFK ++G
Sbjct: 650 EIMYLRQIYKQQL---HCVVVGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQGSC 704
Query: 1305 KEED 1308
+D
Sbjct: 705 LTKD 708
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,204,914
Number of Sequences: 37866
Number of extensions: 6299456
Number of successful extensions: 149552
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 1237
Number of HSP's that attempted gapping in prelim test: 54725
Number of HSP's gapped (non-prelim): 61923
length of query: 2059
length of database: 18,247,518
effective HSP length: 118
effective length of query: 1941
effective length of database: 13,779,330
effective search space: 26745679530
effective search space used: 26745679530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.