Search of human proteins with 157427673

Search of human proteins with 157427673

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]
         (459 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]            930   0.0  
gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]             845   0.0  
gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]             674   0.0  
gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]          523   e-148
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]       518   e-147
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]        466   e-131
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]          419   e-117
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]       379   e-105
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]       328   5e-90
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]     47   4e-05
gi|33469935 EGF-like, fibronectin type III and laminin G domains...    43   5e-04
gi|33469931 EGF-like, fibronectin type III and laminin G domains...    43   5e-04
gi|33469929 EGF-like, fibronectin type III and laminin G domains...    43   5e-04
gi|38788416 laminin, alpha 1 precursor [Homo sapiens]                  43   7e-04
gi|33469937 EGF-like, fibronectin type III and laminin G domains...    43   7e-04
gi|239743797 PREDICTED: similar to cell recognition molecule CAS...    40   0.003
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2...    40   0.003
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1...    40   0.003
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]            40   0.003
gi|54873613 agrin [Homo sapiens]                                       39   0.013
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]             38   0.022
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s...    37   0.029
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa...    37   0.029
gi|18640734 contactin associated protein-like 5 [Homo sapiens]         37   0.029
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]           37   0.029
gi|91982772 mucin 17 [Homo sapiens]                                    37   0.029
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]          37   0.029
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]          37   0.029
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]           37   0.029
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]     37   0.037

>gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]
          Length = 459

 Score =  930 bits (2404), Expect = 0.0
 Identities = 459/459 (100%), Positives = 459/459 (100%)

Query: 1   MHLRIHARRSPPRRPAWTLGIWFLFWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFH 60
           MHLRIHARRSPPRRPAWTLGIWFLFWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFH
Sbjct: 1   MHLRIHARRSPPRRPAWTLGIWFLFWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFH 60

Query: 61  GSKHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTT 120
           GSKHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTT
Sbjct: 61  GSKHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTT 120

Query: 121 VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTR 180
           VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTR
Sbjct: 121 VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTR 180

Query: 181 NGGNATLQVDNWPVNEHYPTGNTDNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQ 240
           NGGNATLQVDNWPVNEHYPTGNTDNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQ
Sbjct: 181 NGGNATLQVDNWPVNEHYPTGNTDNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQ 240

Query: 241 AQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT 300
           AQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT
Sbjct: 241 AQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT 300

Query: 301 TSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTA 360
           TSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTA
Sbjct: 301 TSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTA 360

Query: 361 NPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDE 420
           NPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDE
Sbjct: 361 NPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDE 420

Query: 421 TRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 459
           TRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV
Sbjct: 421 TRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 459


>gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]
          Length = 432

 Score =  845 bits (2184), Expect = 0.0
 Identities = 429/462 (92%), Positives = 429/462 (92%), Gaps = 33/462 (7%)

Query: 1   MHLRIHARRSPPRRPAWTLGIWFLFWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFH 60
           MHLRIHARRSPPRRPAWTLGIWFLFWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFH
Sbjct: 1   MHLRIHARRSPPRRPAWTLGIWFLFWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFH 60

Query: 61  GSKHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTT 120
           GSKHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTT
Sbjct: 61  GSKHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTT 120

Query: 121 VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTR 180
           VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTR
Sbjct: 121 VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTR 180

Query: 181 NGGNATLQVDNWPVNEHYPTGNTDNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQ 240
           NGGNATLQVDNWPVNEHYPT                              GRQLTIFNTQ
Sbjct: 181 NGGNATLQVDNWPVNEHYPT------------------------------GRQLTIFNTQ 210

Query: 241 AQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT 300
           AQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT
Sbjct: 211 AQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT 270

Query: 301 TSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPST- 359
           TSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPST 
Sbjct: 271 TSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTG 330

Query: 360 --ANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQ 417
             ANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQ
Sbjct: 331 RSANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQ 390

Query: 418 VDETRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 459
           VDETRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV
Sbjct: 391 VDETRNYISNSAQSNGTLMKEKQQSSKSGHKKQKNKDREYYV 432


>gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]
          Length = 1061

 Score =  674 bits (1739), Expect = 0.0
 Identities = 346/376 (92%), Positives = 346/376 (92%), Gaps = 30/376 (7%)

Query: 84   GATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHI 143
            GATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHI
Sbjct: 716  GATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHI 775

Query: 144  EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
            EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTG  
Sbjct: 776  EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTG-- 833

Query: 204  DNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYY 263
                                        RQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYY
Sbjct: 834  ----------------------------RQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYY 865

Query: 264  DGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATTTT 323
            DGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATTTT
Sbjct: 866  DGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATTTT 925

Query: 324  RKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTANPTEPGIRRVPGASEVIRESSST 383
            RKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTANPTEPGIRRVPGASEVIRESSST
Sbjct: 926  RKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTANPTEPGIRRVPGASEVIRESSST 985

Query: 384  TGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTLMKEKQQSS 443
            TGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTLMKEKQQSS
Sbjct: 986  TGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTLMKEKQQSS 1045

Query: 444  KSGHKKQKNKDREYYV 459
            KSGHKKQKNKDREYYV
Sbjct: 1046 KSGHKKQKNKDREYYV 1061



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 117 FSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVNDGKYHV 175
           F TT  DG ++  +S  G  DF+ + + +G I  VF++G     IK     P+ND ++H 
Sbjct: 526 FKTTSPDGFIL-FNSGDG-NDFIAVELVKGYIHYVFDLGNGPNVIKGNSDRPLNDNQWHN 583

Query: 176 VRFTRNGGNA-TLQVDNWPVNE 196
           V  TR+  N  +L+VD   V +
Sbjct: 584 VVITRDNSNTHSLKVDTKVVTQ 605



 Score = 37.0 bits (84), Expect = 0.037
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 108 TRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTP 167
           T ++ ++  F +    G+LV   S     D L+L ++ G++ ++ N+  + I+    + P
Sbjct: 331 TEAEDVSFRFMSQRAYGLLVATTSRDS-ADTLRLELDGGRVKLMVNLDCIRINCNSSKGP 389

Query: 168 --------VNDGKYHVVRFTRNGGNATLQVDN 191
                   +ND ++H VR  R G +  L VD+
Sbjct: 390 ETLYAGQKLNDNEWHTVRVVRRGKSLKLTVDD 421



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 14/55 (25%), Positives = 32/55 (58%)

Query: 137 DFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDN 191
           DF  + +  G + ++ ++G+  I +K  +   NDG+++ V   R+G + T+ V++
Sbjct: 133 DFFAVELLDGNLYLLLDMGSGTIKVKATQKKANDGEWYHVDIQRDGRSGTISVNS 187


>gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]
          Length = 442

 Score =  523 bits (1346), Expect = e-148
 Identities = 280/424 (66%), Positives = 322/424 (75%), Gaps = 42/424 (9%)

Query: 46  SSSPGSHSQHEHHFHGS-KHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYTWPAND 104
           +SS G+H  H HHFHGS KHHSVPI+IYRSP SLRGGHAG TYIF K GG I Y WP ND
Sbjct: 51  ASSLGAH--HIHHFHGSSKHHSVPIAIYRSPASLRGGHAGTTYIFSKGGGQITYKWPPND 108

Query: 105 RPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEE 164
           RPSTR+DRLA+GFST  K+ +LVR+DS+ GLGD+L+LHI QGKIGV FN+GT DI+I+E 
Sbjct: 109 RPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES 168

Query: 165 RTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNTDNERFQMVKQKIPFKYNRPVE 224
              +NDGKYHVVRFTR+GGNATLQVD+WPV E YP G                       
Sbjct: 169 NAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAG----------------------- 205

Query: 225 EWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGS 284
                  RQLTIFN+QA I IGGK++G+ FQGQLSGLYY+GLKVLNMAAEN+ NI I G+
Sbjct: 206 -------RQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGN 258

Query: 285 VRLVGEVPSILGTTQT-TSMPPEMSTTVMETTTTMATTTTRKNRSTAS---IQPTSDDLV 340
           VRLVGEVPS + T  T T+M  EMST++METTTT+AT+T R+ +        Q T D LV
Sbjct: 259 VRLVGEVPSSMTTESTATAMQSEMSTSIMETTTTLATSTARRGKPPTKEPISQTTDDILV 318

Query: 341 SSAECSSDDEDFVECEPST---ANPTEPGIRR-VPGASEVIRESSSTTGMVVGIVAAAAL 396
           +SAEC SDDED   CEPS+   ANPT  G R   PG++EVIRESSSTTGMVVGIVAAAAL
Sbjct: 319 ASAECPSDDEDIDPCEPSSGGLANPTRAGGREPYPGSAEVIRESSSTTGMVVGIVAAAAL 378

Query: 397 CILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTLMKEKQQSS-KSGHKKQKNKDR 455
           CILILLYAMYKYRNRDEGSY VDE+RNYISNSAQSNG ++KEKQ SS KS +K +KNKD+
Sbjct: 379 CILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAVVKEKQPSSAKSSNKNKKNKDK 438

Query: 456 EYYV 459
           EYYV
Sbjct: 439 EYYV 442


>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
          Length = 1547

 Score =  518 bits (1333), Expect = e-147
 Identities = 265/385 (68%), Positives = 311/385 (80%), Gaps = 9/385 (2%)

Query: 84   GATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHI 143
            G TYIF K GG I Y WP NDRPSTR+DRLA+GFST  K+ +LVR+DS+ GLGD+L+LHI
Sbjct: 1163 GTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHI 1222

Query: 144  EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
             QGKIGV FN+GT DI+I+E    +NDGKYHVVRFTR+GGNATLQVD+WPV E YP GN 
Sbjct: 1223 HQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNN 1282

Query: 204  DNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYY 263
            DNER  + +Q+IP++  R V+EWL +KGRQLTIFN+QA I IGGK++G+ FQGQLSGLYY
Sbjct: 1283 DNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYY 1342

Query: 264  DGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT-TSMPPEMSTTVMETTTTMATTT 322
            +GLKVLNMAAEN+ NI I G+VRLVGEVPS + T  T T+M  EMST++METTTT+AT+T
Sbjct: 1343 NGLKVLNMAAENDANIAIVGNVRLVGEVPSSMTTESTATAMQSEMSTSIMETTTTLATST 1402

Query: 323  TRKNRSTAS---IQPTSDDLVSSAECSSDDEDFVECEPST---ANPTEPGIRR-VPGASE 375
             R+ +        Q T D LV+SAEC SDDED   CEPS+   ANPT  G R   PG++E
Sbjct: 1403 ARRGKPPTKEPISQTTDDILVASAECPSDDEDIDPCEPSSGGLANPTRAGGREPYPGSAE 1462

Query: 376  VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTL 435
            VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSY VDE+RNYISNSAQSNG +
Sbjct: 1463 VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAV 1522

Query: 436  MKEKQQSS-KSGHKKQKNKDREYYV 459
            +KEKQ SS KS +K +KNKD+EYYV
Sbjct: 1523 VKEKQPSSAKSSNKNKKNKDKEYYV 1547



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 124 GILVRIDSAPGLGDFLQLHIEQG-KIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNG 182
           G+++  D   G  DFL+L + +G ++ + F+I   + +     TPVNDG +H VR  R  
Sbjct: 65  GLVLYFDDE-GFCDFLELILTRGGRLQLSFSIFCAEPATLLADTPVNDGAWHSVRIRRQF 123

Query: 183 GNATLQVD 190
            N TL +D
Sbjct: 124 RNTTLFID 131



 Score = 37.4 bits (85), Expect = 0.029
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 108 TRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTP 167
           T ++ +++ F +    GIL+   S     D L+L ++ G++ +  N+  + I+    + P
Sbjct: 777 TEAEDVSLRFRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLDCIRINCNSSKGP 835

Query: 168 --------VNDGKYHVVRFTRNGGNATLQVDN 191
                   +ND ++H VR  R G +  L VD+
Sbjct: 836 ETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDD 867



 Score = 36.2 bits (82), Expect = 0.064
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 33/179 (18%)

Query: 25  FWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFHGSKHHSV----PISIYRSPVSL-- 78
           F GC+   V+ +++V    S  +  G      H     K  +V    PI+ + +P S   
Sbjct: 474 FMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPIT-FETPESFIS 532

Query: 79  -------RGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDS 131
                  + G     +   +  GLIL++   + +P  + D          K   ++++D 
Sbjct: 533 LPKWNAKKTGSISFDFRTTEPNGLILFS---HGKPRHQKD---------AKHPQMIKVD- 579

Query: 132 APGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVD 190
                 F  + +  G + ++ ++G+  I IK     VNDG+++ V F R+G + T+ V+
Sbjct: 580 ------FFAIEMLDGHLYLLLDMGSGTIKIKALLKKVNDGEWYHVDFQRDGRSGTISVN 632



 Score = 35.8 bits (81), Expect = 0.083
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 117  FSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVNDGKYHV 175
            F TT  DG+++  +S  G  DF+ + + +G +  VF++G     IK     P+ND ++H 
Sbjct: 973  FKTTSLDGLIL-YNSGDG-NDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHN 1030

Query: 176  VRFTRNGGNA-TLQVD 190
            V  +R+  N  T+++D
Sbjct: 1031 VMISRDTSNLHTVKID 1046


>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
          Length = 1477

 Score =  466 bits (1200), Expect = e-131
 Identities = 250/385 (64%), Positives = 289/385 (75%), Gaps = 39/385 (10%)

Query: 84   GATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHI 143
            G TYIF K GG I Y WP NDRPSTR+DRLA+GFST  K+ +LVR+DS+ GLGD+L+LHI
Sbjct: 1123 GTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHI 1182

Query: 144  EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
             QGKIGV FN+GT DI+I+E    +NDGKYHVVRFTR+GGNATLQVD+WPV E YP G  
Sbjct: 1183 HQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAG-- 1240

Query: 204  DNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYY 263
                                        RQLTIFN+QA I IGGK++G+ FQGQLSGLYY
Sbjct: 1241 ----------------------------RQLTIFNSQATIIIGGKEQGQPFQGQLSGLYY 1272

Query: 264  DGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT-TSMPPEMSTTVMETTTTMATTT 322
            +GLKVLNMAAEN+ NI I G+VRLVGEVPS + T  T T+M  EMST++METTTT+AT+T
Sbjct: 1273 NGLKVLNMAAENDANIAIVGNVRLVGEVPSSMTTESTATAMQSEMSTSIMETTTTLATST 1332

Query: 323  TRKNRSTAS---IQPTSDDLVSSAECSSDDEDFVECEPST---ANPTEPGIRR-VPGASE 375
             R+ +        Q T D LV+SAEC SDDED   CEPS+   ANPT  G R   PG++E
Sbjct: 1333 ARRGKPPTKEPISQTTDDILVASAECPSDDEDIDPCEPSSGGLANPTRAGGREPYPGSAE 1392

Query: 376  VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTL 435
            VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSY VDE+RNYISNSAQSNG +
Sbjct: 1393 VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAV 1452

Query: 436  MKEKQQSS-KSGHKKQKNKDREYYV 459
            +KEKQ SS KS +K +KNKD+EYYV
Sbjct: 1453 VKEKQPSSAKSSNKNKKNKDKEYYV 1477



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 124 GILVRIDSAPGLGDFLQLHIEQG-KIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNG 182
           G+++  D   G  DFL+L + +G ++ + F+I   + +     TPVNDG +H VR  R  
Sbjct: 65  GLVLYFDDE-GFCDFLELILTRGGRLQLSFSIFCAEPATLLADTPVNDGAWHSVRIRRQF 123

Query: 183 GNATLQVD 190
            N TL +D
Sbjct: 124 RNTTLFID 131



 Score = 37.4 bits (85), Expect = 0.029
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 108 TRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTP 167
           T ++ +++ F +    GIL+   S     D L+L ++ G++ +  N+  + I+    + P
Sbjct: 737 TEAEDVSLRFRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLDCIRINCNSSKGP 795

Query: 168 --------VNDGKYHVVRFTRNGGNATLQVDN 191
                   +ND ++H VR  R G +  L VD+
Sbjct: 796 ETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDD 827



 Score = 36.2 bits (82), Expect = 0.064
 Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 33/179 (18%)

Query: 25  FWGCIVSSVWSSSNVASSSSTSSSPGSHSQHEHHFHGSKHHSV----PISIYRSPVSL-- 78
           F GC+   V+ +++V    S  +  G      H     K  +V    PI+ + +P S   
Sbjct: 434 FMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPIT-FETPESFIS 492

Query: 79  -------RGGHAGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDS 131
                  + G     +   +  GLIL++   + +P  + D          K   ++++D 
Sbjct: 493 LPKWNAKKTGSISFDFRTTEPNGLILFS---HGKPRHQKD---------AKHPQMIKVD- 539

Query: 132 APGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVD 190
                 F  + +  G + ++ ++G+  I IK     VNDG+++ V F R+G + T+ V+
Sbjct: 540 ------FFAIEMLDGHLYLLLDMGSGTIKIKALLKKVNDGEWYHVDFQRDGRSGTISVN 592



 Score = 35.8 bits (81), Expect = 0.083
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 117  FSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVNDGKYHV 175
            F TT  DG+++  +S  G  DF+ + + +G +  VF++G     IK     P+ND ++H 
Sbjct: 933  FKTTSLDGLIL-YNSGDG-NDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHN 990

Query: 176  VRFTRNGGNA-TLQVD 190
            V  +R+  N  T+++D
Sbjct: 991  VMISRDTSNLHTVKID 1006


>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
          Length = 666

 Score =  419 bits (1076), Expect = e-117
 Identities = 208/326 (63%), Positives = 255/326 (78%), Gaps = 7/326 (2%)

Query: 40  ASSSSTSSSPGSHSQHEHHFHGSKHHSVPISIYRSPVSLRGGHAGATYIFGKSGGLILYT 99
           A+  +  SS  S + H HHFH SKH +VPI+I R P   RGGHAG TYIFGK G LI YT
Sbjct: 47  AAEGARVSSSLSTTHHVHHFH-SKHGTVPIAINRMPFLTRGGHAGTTYIFGKGGALITYT 105

Query: 100 WPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDI 159
           WP NDRPSTR DRLAVGFST  +  +LVR+DSA GLGD+LQLHI+QG +GV+FN+GT DI
Sbjct: 106 WPPNDRPSTRMDRLAVGFSTHQRSAVLVRVDSASGLGDYLQLHIDQGTVGVIFNVGTDDI 165

Query: 160 SIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNTDNERFQMVKQKIPFKY 219
           +I E    V+DGKYHVVRFTR+GGNATLQVD+WPVNE YP GN DNER  + +Q+IP++ 
Sbjct: 166 TIDEPNAIVSDGKYHVVRFTRSGGNATLQVDSWPVNERYPAGNFDNERLAIARQRIPYRL 225

Query: 220 NRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNI 279
            R V+EWL +KGRQLTIFN+QA I IGG+D+GR FQGQ+SGLYY+GLKVL +AAE++PN+
Sbjct: 226 GRVVDEWLLDKGRQLTIFNSQAAIKIGGRDQGRPFQGQVSGLYYNGLKVLALAAESDPNV 285

Query: 280 KINGSVRLVGEVPSILGTTQT--TSMPPEMSTTVMETTTTMATTTTRKNRS----TASIQ 333
           +  G +RLVGE PS+L + +T  T++  +M+TT+METTTTMATTTTR+ RS     ++ Q
Sbjct: 286 RTEGHLRLVGEGPSVLLSAETTATTLLADMATTIMETTTTMATTTTRRGRSPTLRDSTTQ 345

Query: 334 PTSDDLVSSAECSSDDEDFVECEPST 359
            T D LV+SAEC SDDED  ECEPST
Sbjct: 346 NTDDLLVASAECPSDDEDLEECEPST 371



 Score =  157 bits (396), Expect = 2e-38
 Identities = 81/102 (79%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 359 TANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV 418
           TANPT PG R  PGA EVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV
Sbjct: 565 TANPTGPGERGPPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV 624

Query: 419 DETRNYISNSAQSNGTLMKEKQQSS-KSGHKKQKNKDREYYV 459
           D++RNYISNSAQSNG ++KEK  ++ K+  K +KNKD+EYYV
Sbjct: 625 DQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAKKNKDKEYYV 666


>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
          Length = 1712

 Score =  379 bits (973), Expect = e-105
 Identities = 185/282 (65%), Positives = 227/282 (80%), Gaps = 6/282 (2%)

Query: 84   GATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHI 143
            G TYIFGK G LI YTWP NDRPSTR DRLAVGFST  +  +LVR+DSA GLGD+LQLHI
Sbjct: 1136 GTTYIFGKGGALITYTWPPNDRPSTRMDRLAVGFSTHQRSAVLVRVDSASGLGDYLQLHI 1195

Query: 144  EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
            +QG +GV+FN+GT DI+I E    V+DGKYHVVRFTR+GGNATLQVD+WPVNE YP GN 
Sbjct: 1196 DQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDSWPVNERYPAGNF 1255

Query: 204  DNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYY 263
            DNER  + +Q+IP++  R V+EWL +KGRQLTIFN+QA I IGG+D+GR FQGQ+SGLYY
Sbjct: 1256 DNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQAAIKIGGRDQGRPFQGQVSGLYY 1315

Query: 264  DGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT--TSMPPEMSTTVMETTTTMATT 321
            +GLKVL +AAE++PN++  G +RLVGE PS+L + +T  T++  +M+TT+METTTTMATT
Sbjct: 1316 NGLKVLALAAESDPNVRTEGHLRLVGEGPSVLLSAETTATTLLADMATTIMETTTTMATT 1375

Query: 322  TTRKNRS----TASIQPTSDDLVSSAECSSDDEDFVECEPST 359
            TTR+ RS     ++ Q T D LV+SAEC SDDED  ECEPST
Sbjct: 1376 TTRRGRSPTLRDSTTQNTDDLLVASAECPSDDEDLEECEPST 1417



 Score =  157 bits (396), Expect = 2e-38
 Identities = 81/102 (79%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 359  TANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV 418
            TANPT PG R  PGA EVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV
Sbjct: 1611 TANPTGPGERGPPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV 1670

Query: 419  DETRNYISNSAQSNGTLMKEKQQSS-KSGHKKQKNKDREYYV 459
            D++RNYISNSAQSNG ++KEK  ++ K+  K +KNKD+EYYV
Sbjct: 1671 DQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAKKNKDKEYYV 1712



 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 117  FSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVNDGKYHV 175
            F TT  DG+L+  +S  G  DF+ + + +G I  VF++G     +K     PVND ++H 
Sbjct: 946  FKTTAPDGLLL-FNSGNG-NDFIVIELVKGYIHYVFDLGNGPSLMKGNSDKPVNDNQWHN 1003

Query: 176  VRFTRNGGNA-TLQVDNWPVNEH 197
            V  +R+ GN  TL++D+  V +H
Sbjct: 1004 VVVSRDPGNVHTLKIDSRTVTQH 1026



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 110 SDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVN 169
           S  L+    T     +L+ +D   G  DFL+L +  G++ + F +   + +  +  TPV 
Sbjct: 50  SGELSFSLRTNATRALLLYLDDG-GDCDFLELLLVDGRLRLRFTLSCAEPATLQLDTPVA 108

Query: 170 DGKYHVVRFTRNGGNATLQVD 190
           D ++H+V  TR+     L VD
Sbjct: 109 DDRWHMVLLTRDARRTALAVD 129



 Score = 36.2 bits (82), Expect = 0.064
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 110 SDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGT--VDISIKEERTP 167
           +D + + F T  ++G+++    +    D++ L ++ G + +V N+G+   +  ++     
Sbjct: 311 TDEITLAFRTLQRNGLMLHTGKS---ADYVNLSLKSGAVWLVINLGSGAFEALVEPVNGK 367

Query: 168 VNDGKYHVVRFTRN 181
            ND  +H VR TRN
Sbjct: 368 FNDNAWHDVRVTRN 381



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 108 TRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTP 167
           T ++ +++ F +    G+++   S     D L+L ++ G++ +  N+  + +     + P
Sbjct: 751 TEAEDVSLRFMSQRAYGLMMATTSRES-ADTLRLELDGGQMKLTVNLDCLRVGCAPSKGP 809

Query: 168 --------VNDGKYHVVRFTRNGGNATLQVDN 191
                   +ND ++H VR  R G +  L VDN
Sbjct: 810 ETLFAGHKLNDNEWHTVRVVRRGKSLQLSVDN 841



 Score = 33.5 bits (75), Expect = 0.41
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 109 RSDRLAVGFSTTVKDGILVRID-----------SAPGLGDFLQLHIEQGKIGVVFNIGTV 157
           R+  +++ F TT  +G+L+              S+    D+  + +  G + ++ ++G+ 
Sbjct: 513 RTGSISLDFRTTEPNGLLLFSQGRRAGGGAGSHSSAQRADYFAMELLDGHLYLLLDMGSG 572

Query: 158 DISIKEERTPVNDGKYHVVRFTRNGGNATLQVDN 191
            I ++     VNDG++  V F R+G   ++ V++
Sbjct: 573 GIKLRASSRKVNDGEWCHVDFQRDGRKGSISVNS 606


>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
          Length = 1642

 Score =  328 bits (842), Expect = 5e-90
 Identities = 170/282 (60%), Positives = 205/282 (72%), Gaps = 36/282 (12%)

Query: 84   GATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHI 143
            G TYIFGK G LI YTWP NDRPSTR DRLAVGFST  +  +LVR+DSA GLGD+LQLHI
Sbjct: 1096 GTTYIFGKGGALITYTWPPNDRPSTRMDRLAVGFSTHQRSAVLVRVDSASGLGDYLQLHI 1155

Query: 144  EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
            +QG +GV+FN+GT DI+I E    V+DGKYHVVRFTR+GGNATLQVD+WPVNE YP    
Sbjct: 1156 DQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDSWPVNERYPA--- 1212

Query: 204  DNERFQMVKQKIPFKYNRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYY 263
                                       GRQLTIFN+QA I IGG+D+GR FQGQ+SGLYY
Sbjct: 1213 ---------------------------GRQLTIFNSQAAIKIGGRDQGRPFQGQVSGLYY 1245

Query: 264  DGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQT--TSMPPEMSTTVMETTTTMATT 321
            +GLKVL +AAE++PN++  G +RLVGE PS+L + +T  T++  +M+TT+METTTTMATT
Sbjct: 1246 NGLKVLALAAESDPNVRTEGHLRLVGEGPSVLLSAETTATTLLADMATTIMETTTTMATT 1305

Query: 322  TTRKNRS----TASIQPTSDDLVSSAECSSDDEDFVECEPST 359
            TTR+ RS     ++ Q T D LV+SAEC SDDED  ECEPST
Sbjct: 1306 TTRRGRSPTLRDSTTQNTDDLLVASAECPSDDEDLEECEPST 1347



 Score =  157 bits (396), Expect = 2e-38
 Identities = 81/102 (79%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 359  TANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV 418
            TANPT PG R  PGA EVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV
Sbjct: 1541 TANPTGPGERGPPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQV 1600

Query: 419  DETRNYISNSAQSNGTLMKEKQQSS-KSGHKKQKNKDREYYV 459
            D++RNYISNSAQSNG ++KEK  ++ K+  K +KNKD+EYYV
Sbjct: 1601 DQSRNYISNSAQSNGAVVKEKAPAAPKTPSKAKKNKDKEYYV 1642



 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 117 FSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVNDGKYHV 175
           F TT  DG+L+  +S  G  DF+ + + +G I  VF++G     +K     PVND ++H 
Sbjct: 906 FKTTAPDGLLL-FNSGNG-NDFIVIELVKGYIHYVFDLGNGPSLMKGNSDKPVNDNQWHN 963

Query: 176 VRFTRNGGNA-TLQVDNWPVNEH 197
           V  +R+ GN  TL++D+  V +H
Sbjct: 964 VVVSRDPGNVHTLKIDSRTVTQH 986



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 110 SDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVN 169
           S  L+    T     +L+ +D   G  DFL+L +  G++ + F +   + +  +  TPV 
Sbjct: 50  SGELSFSLRTNATRALLLYLDDG-GDCDFLELLLVDGRLRLRFTLSCAEPATLQLDTPVA 108

Query: 170 DGKYHVVRFTRNGGNATLQVD 190
           D ++H+V  TR+     L VD
Sbjct: 109 DDRWHMVLLTRDARRTALAVD 129



 Score = 36.2 bits (82), Expect = 0.064
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 110 SDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGT--VDISIKEERTP 167
           +D + + F T  ++G+++    +    D++ L ++ G + +V N+G+   +  ++     
Sbjct: 287 TDEITLAFRTLQRNGLMLHTGKS---ADYVNLSLKSGAVWLVINLGSGAFEALVEPVNGK 343

Query: 168 VNDGKYHVVRFTRN 181
            ND  +H VR TRN
Sbjct: 344 FNDNAWHDVRVTRN 357



 Score = 33.5 bits (75), Expect = 0.41
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 109 RSDRLAVGFSTTVKDGILVRID-----------SAPGLGDFLQLHIEQGKIGVVFNIGTV 157
           R+  +++ F TT  +G+L+              S+    D+  + +  G + ++ ++G+ 
Sbjct: 482 RTGSISLDFRTTEPNGLLLFSQGRRAGGGAGSHSSAQRADYFAMELLDGHLYLLLDMGSG 541

Query: 158 DISIKEERTPVNDGKYHVVRFTRNGGNATLQVDN 191
            I ++     VNDG++  V F R+G   ++ V++
Sbjct: 542 GIKLRASSRKVNDGEWCHVDFQRDGRKGSISVNS 575



 Score = 33.1 bits (74), Expect = 0.54
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 108 TRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTP 167
           T ++ +++ F +    G+++   S     D L+L ++ G++ +  N+G    ++      
Sbjct: 720 TEAEDVSLRFMSQRAYGLMMATTSRES-ADTLRLELDGGQMKLTVNLGKGPETLFAGHK- 777

Query: 168 VNDGKYHVVRFTRNGGNATLQVDN 191
           +ND ++H VR  R G +  L VDN
Sbjct: 778 LNDNEWHTVRVVRRGKSLQLSVDN 801


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 54  QHEHHFHGSKHHS--VPISIY-RSPVSLRGGHAGATY----IFGKSGGLILYTWPANDRP 106
           +H+ HFH +  +   VP++   R  + LR G  G  Y    ++      I Y +P   R 
Sbjct: 134 RHDLHFHFTARYIRIVPLAWNPRGKIGLRLGLYGCPYKADILYFDGDDAISYRFP---RG 190

Query: 107 STRS--DRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEE 164
            +RS  D  A  F T  KDG+L+  + A   GD++ L +E   + +  ++G+  I  +  
Sbjct: 191 VSRSLWDVFAFSFKTEEKDGLLLHAEGAQ--GDYVTLELEGAHLLLHMSLGSSPIQPRPG 248

Query: 165 RTPV------NDGKYHVVRFTRNGGNATLQVDNWP----VNEHYPTGNTDNERF 208
            T V      ND  +H VR  R G +    +D +     +N  +   N D E F
Sbjct: 249 HTTVSAGGVLNDQHWHYVRVDRFGRDVNFTLDGYVQRFILNGDFERLNLDTEMF 302



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 81   GHAGATYIFGKSG-GLILYTWPANDRP---------STRSDRLAVGFSTTVKDGILVRID 130
            G+    Y+ G  G G  L  +P   RP         +   + ++  FST+    +L+ + 
Sbjct: 1042 GYDTPGYVPGYHGPGYRLPDYPRPGRPVPGYRGPVYNVTGEEVSFSFSTSSAPAVLLYVS 1101

Query: 131  SAPGLGDFLQLHI-EQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQV 189
            S   + D++ + I + G + + + +GT     +    PV DG+ H +  TR   N  +QV
Sbjct: 1102 SF--VRDYMAVLIKDDGTLQLRYQLGTSPYVYQLTTRPVTDGQPHSINITRVYRNLFIQV 1159

Query: 190  DNWPVNE 196
            D +P+ E
Sbjct: 1160 DYFPLTE 1166


>gi|33469935 EGF-like, fibronectin type III and laminin G domains
           isoform 3 [Homo sapiens]
          Length = 375

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 105 RPSTRSDRLAVGFSTTVKDGILVRIDSAPGL--GDFLQLHIEQGKIGVVFNIGTVDISIK 162
           R S     + + F TT KDG+L+    +P     DF+ L +  G +   +N+G+   SI 
Sbjct: 214 RVSGSRSNVFMRFKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSYNLGSGVASIM 273

Query: 163 EERTPVNDGKYHVVRFTRNGGNATLQVDNW 192
              +  NDG++H V+  R+G +  + VD++
Sbjct: 274 VNGS-FNDGRWHRVKAVRDGQSGKITVDDY 302


>gi|33469931 EGF-like, fibronectin type III and laminin G domains
           isoform 2 [Homo sapiens]
          Length = 775

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 105 RPSTRSDRLAVGFSTTVKDGILVRIDSAPGL--GDFLQLHIEQGKIGVVFNIGTVDISIK 162
           R S     + + F TT KDG+L+    +P     DF+ L +  G +   +N+G+   SI 
Sbjct: 614 RVSGSRSNVFMRFKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSYNLGSGVASIM 673

Query: 163 EERTPVNDGKYHVVRFTRNGGNATLQVDNW 192
              +  NDG++H V+  R+G +  + VD++
Sbjct: 674 VNGS-FNDGRWHRVKAVRDGQSGKITVDDY 702



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 107 STRSDRLAVGFSTTVKDGILVRI-DSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEER 165
           S ++ ++ + F    +DG+L+   ++  G GDF+ L I +  +   FN GT  ++I    
Sbjct: 171 SYQAFQITLEFRAEAEDGLLLYCGENEHGRGDFMSLAIIRRSLQFRFNCGT-GVAIIVSE 229

Query: 166 TPVNDGKYHVVRFTRNGGNATLQVDN 191
           T +  G +H V   R+G N  LQ++N
Sbjct: 230 TKIKLGGWHTVMLYRDGLNGLLQLNN 255


>gi|33469929 EGF-like, fibronectin type III and laminin G domains
           isoform 1 [Homo sapiens]
          Length = 1009

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 105 RPSTRSDRLAVGFSTTVKDGILVRIDSAPGL--GDFLQLHIEQGKIGVVFNIGTVDISIK 162
           R S     + + F TT KDG+L+    +P     DF+ L +  G +   +N+G+   SI 
Sbjct: 848 RVSGSRSNVFMRFKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSYNLGSGVASIM 907

Query: 163 EERTPVNDGKYHVVRFTRNGGNATLQVDNW 192
              +  NDG++H V+  R+G +  + VD++
Sbjct: 908 VNGS-FNDGRWHRVKAVRDGQSGKITVDDY 936



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 107 STRSDRLAVGFSTTVKDGILVRI-DSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEER 165
           S ++ ++ + F    +DG+L+   ++  G GDF+ L I +  +   FN GT  ++I    
Sbjct: 405 SYQAFQITLEFRAEAEDGLLLYCGENEHGRGDFMSLAIIRRSLQFRFNCGT-GVAIIVSE 463

Query: 166 TPVNDGKYHVVRFTRNGGNATLQVDN 191
           T +  G +H V   R+G N  LQ++N
Sbjct: 464 TKIKLGGWHTVMLYRDGLNGLLQLNN 489


>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
          Length = 3075

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 107  STRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERT 166
            ST  + L +   T   D +L  + S+    DFL + + +G++  ++++G+    ++    
Sbjct: 2136 STNYNTLTLNVKTQEPDNLLFYLGSSTA-SDFLAVEMRRGRVAFLWDLGSGSTRLEFPDF 2194

Query: 167  PVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPT 200
            P++D ++H +   R G   +L V     N+  PT
Sbjct: 2195 PIDDNRWHSIHVARFGNIGSLSVKEMSSNQKSPT 2228



 Score = 36.2 bits (82), Expect = 0.064
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 41/189 (21%)

Query: 36   SSNVASSSSTSSSPGSHSQHEHH-----FHGSKHHSVPISIYRSP---VSLRGGHAGATY 87
            SSN  S + TS SPG+ +  + +     F G     +   I +SP   V+   G  G  +
Sbjct: 2221 SSNQKSPTKTSKSPGTANVLDVNNSTLMFVGG----LGGQIKKSPAVKVTHFKGCLGEAF 2276

Query: 88   IFGKSGGLILYTW-----------PANDRPSTRSD----------------RLAVGFSTT 120
            + GKS GL  Y               N+ PS   D                ++ + F+T 
Sbjct: 2277 LNGKSIGLWNYIEREGKCRGCFGSSQNEDPSFHFDGSGYSVVEKSLPATVTQIIMLFNTF 2336

Query: 121  VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTR 180
              +G+L+ + S  G  DFL + + +G++ V+ ++G+  I++  +R   N+G ++ + F R
Sbjct: 2337 SPNGLLLYLGSY-GTKDFLSIELFRGRVKVMTDLGSGPITLLTDRR-YNNGTWYKIAFQR 2394

Query: 181  NGGNATLQV 189
            N     L V
Sbjct: 2395 NRKQGVLAV 2403


>gi|33469937 EGF-like, fibronectin type III and laminin G domains
           isoform 4 [Homo sapiens]
          Length = 152

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 117 FSTTVKDGILVRIDSAPGL--GDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYH 174
           F TT KDG+L+    +P     DF+ L +  G +   +N+G+   SI    +  NDG++H
Sbjct: 3   FKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSYNLGSGVASIMVNGS-FNDGRWH 61

Query: 175 VVRFTRNGGNATLQVDNW 192
            V+  R+G +  + VD++
Sbjct: 62  RVKAVRDGQSGKITVDDY 79


>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
           [Homo sapiens]
          Length = 944

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 117 FSTTVKDGILVRIDSAPGLGDFLQLHIEQG-KIGVVFNIGTVDISIK-EERTPVNDGKYH 174
           F TTV  G+ +      G+ DF+++ +    ++   F++G     +  +  TP ND ++H
Sbjct: 554 FKTTVSSGVFME---NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWH 610

Query: 175 VVRFTRNGGNATLQVDNWP 193
            VR  RN   A+LQVD  P
Sbjct: 611 HVRAERNVKGASLQVDQLP 629


>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
           [Homo sapiens]
          Length = 1207

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 117 FSTTVKDGILVRIDSAPGLGDFLQLHIEQG-KIGVVFNIGTVDISIK-EERTPVNDGKYH 174
           F TTV  G+ +      G+ DF+++ +    ++   F++G     +  +  TP ND ++H
Sbjct: 820 FKTTVSSGVFME---NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWH 876

Query: 175 VVRFTRNGGNATLQVDNWP 193
            VR  RN   A+LQVD  P
Sbjct: 877 HVRAERNVKGASLQVDQLP 895



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 254 FQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQTTS 302
           F G L  LYY+G+ V  +A ++ P I + G+V      P  +  T  +S
Sbjct: 329 FHGCLENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSS 377


>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
           [Homo sapiens]
          Length = 1288

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 117 FSTTVKDGILVRIDSAPGLGDFLQLHIEQG-KIGVVFNIGTVDISIK-EERTPVNDGKYH 174
           F TTV  G+ +      G+ DF+++ +    ++   F++G     +  +  TP ND ++H
Sbjct: 821 FKTTVSSGVFME---NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWH 877

Query: 175 VVRFTRNGGNATLQVDNWP 193
            VR  RN   A+LQVD  P
Sbjct: 878 HVRAERNVKGASLQVDQLP 896



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 254 FQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQTTS 302
           F G L  LYY+G+ V  +A ++ P I + G+V      P  +  T  +S
Sbjct: 329 FHGCLENLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSS 377


>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
          Length = 1288

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 117 FSTTVKDGILVRIDSAPGLGDFLQLHIEQG-KIGVVFNIGTVDISIK-EERTPVNDGKYH 174
           F TTV  G+ +      G+ DF+++ +    ++   F++G     +  +  TP ND ++H
Sbjct: 821 FKTTVSSGVFME---NLGITDFIRIELRAPTEVTFSFDVGNGPCEVTVQSPTPFNDNQWH 877

Query: 175 VVRFTRNGGNATLQVDNWP 193
            VR  RN   A+LQVD  P
Sbjct: 878 HVRAERNVKGASLQVDQLP 896



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 12/136 (8%)

Query: 178 FTRNGGNATLQVDNWPVNEHYPTGNTDNERFQMVKQKIPFKYNRPVEEW---LQEKGRQL 234
           F  N GNA L     PV     +   D     ++ + +  + N  V++     Q KG   
Sbjct: 243 FFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVLIELLDTQVNFTVDKHTHHFQAKGDS- 301

Query: 235 TIFNTQAQIAIGGKD--------KGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVR 286
           +  +   +I+ GG          + + F G L  LYY+G+ V  +A ++ P I + G+V 
Sbjct: 302 SYLDLNFEISFGGIPTPGRSRAFRRKSFHGCLENLYYNGVDVTELAKKHKPQILMMGNVS 361

Query: 287 LVGEVPSILGTTQTTS 302
                P  +  T  +S
Sbjct: 362 FSCPQPQTVPVTFLSS 377


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 112  RLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDG 171
            RLA+ F      G+L+   +A G  DFL L +  G++ + F+ G+   ++     PV  G
Sbjct: 1395 RLALEFRALEPQGLLLYNGNARGK-DFLALALLDGRVQLRFDTGSGP-AVLTSAVPVEPG 1452

Query: 172  KYHVVRFTRNGGNATLQVD-NWPVNEHYPTG----NTDNERF 208
            ++H +  +R+    TL VD   PV    P+G    N D + F
Sbjct: 1453 QWHRLELSRHWRRGTLSVDGETPVLGESPSGTDGLNLDTDLF 1494



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 134  GLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWP 193
            G GDF+ L +   ++   +++G    ++   R PV  G +  V   RNG    L+V + P
Sbjct: 1686 GKGDFVSLALRDRRLEFRYDLGK-GAAVIRSREPVTLGAWTRVSLERNGRKGALRVGDGP 1744


>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
          Length = 4391

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 119  TTVKDGIL----VRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYH 174
            T+   G+L    V +  A    DF+ L ++ G +   + +G+ +  +  E  P+NDG++H
Sbjct: 4236 TSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSE-DPINDGEWH 4294

Query: 175  VVRFTRNGGNATLQVD 190
             V   R G   ++QVD
Sbjct: 4295 RVTALREGRRGSIQVD 4310


>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
            sapiens]
          Length = 3118

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 92   SGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVV 151
            SGG  + T+    +  + ++ + V   T V D +L  + SA  + DFL + + +GK+  +
Sbjct: 2150 SGGDCIRTYKPEIKKGSYNN-IVVNVKTAVADNLLFYLGSAKFI-DFLAIEMRKGKVSFL 2207

Query: 152  FNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQV 189
            +++G+    ++     ++D  ++ +  +R G N T+ V
Sbjct: 2208 WDVGSGVGRVEYPDLTIDDSYWYRIVASRTGRNGTISV 2245


>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
            sapiens]
          Length = 3122

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 92   SGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVV 151
            SGG  + T+    +  + ++ + V   T V D +L  + SA  + DFL + + +GK+  +
Sbjct: 2150 SGGDCIRTYKPEIKKGSYNN-IVVNVKTAVADNLLFYLGSAKFI-DFLAIEMRKGKVSFL 2207

Query: 152  FNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQV 189
            +++G+    ++     ++D  ++ +  +R G N T+ V
Sbjct: 2208 WDVGSGVGRVEYPDLTIDDSYWYRIVASRTGRNGTISV 2245


>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
          Length = 1306

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 117 FSTTVKDGILVRIDSAPGLGDFLQLHIEQ-GKIGVVFNIGTVDIS-IKEERTPVNDGKYH 174
           F TT   G+ +      G+ DF++L I    +I    ++G   +  + +  + +ND ++H
Sbjct: 819 FKTTALSGVFLE---NLGIKDFIRLEISSPSEITFAIDVGNGPVELVVQSPSLLNDNQWH 875

Query: 175 VVRFTRNGGNATLQVDNWP 193
            VR  RN    +LQVDN P
Sbjct: 876 YVRAERNLKETSLQVDNLP 894



 Score = 32.3 bits (72), Expect = 0.92
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 39/205 (19%)

Query: 107 STRSDRLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEE-- 164
           ST  D +++ F +   DG+L   +   G  D + L +++G++ +  N+G     +     
Sbjct: 199 STLKDVISLKFKSMQGDGVLFHGEGQRG--DHITLELQKGRLALHLNLGDSKARLSSSLP 256

Query: 165 ----RTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPT-GNTD--NERFQMVKQKIPF 217
                + ++D  +H V   R G      VD     +H+ T G TD  +  +++    IP 
Sbjct: 257 SATLGSLLDDQHWHSVLIERVGKQVNFTVDKH--TQHFRTKGETDALDIDYELSFGGIPV 314

Query: 218 KYNRPVEEWLQEKGRQLTIFNTQAQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNP 277
                        G+  T                + F G +  LYY+G+ ++++A     
Sbjct: 315 ------------PGKPGTFLK-------------KNFHGCIENLYYNGVNIIDLAKRRKH 349

Query: 278 NIKINGSVRLVGEVPSILGTTQTTS 302
            I   G+V      P I+  T   S
Sbjct: 350 QI-YTGNVTFSCSEPQIVPITFVNS 373


>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
          Length = 3333

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 112  RLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVND 170
            + AV   TT   G++    +      F+ L++ +G++  VF +GT    ++ + +   ND
Sbjct: 3011 QFAVDMQTTSSRGLVFHTGTK---NSFMALYLSKGRL--VFALGTDGKKLRIKSKEKCND 3065

Query: 171  GKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
            GK+H V F  +G    L VD     E    GN+
Sbjct: 3066 GKWHTVVFGHDGEKGRLVVDGLRAREGSLPGNS 3098


>gi|91982772 mucin 17 [Homo sapiens]
          Length = 4493

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 281  INGSVRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLV 340
            ++  V  +   P    T  TTS     S T+ E T+ + T+TT +  +  SI P S   V
Sbjct: 3412 VSSEVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTS-LPTSTTSEGSTPLSIMPLSTTPV 3470

Query: 341  SSAECSSDDEDFVECEP--STANPTEPGIRRVPGASEVIRESSSTTG 385
            +S+E S+     V+     +T++PT       P  +EV    +ST G
Sbjct: 3471 ASSEASTLSTTPVDTSTPVTTSSPTNSS----PTTAEVTSMPTSTAG 3513



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 278  NIKINGSVRLVGEVPSILGTTQTTSMPPEMST--TVMETTTTM-ATTTTRKNRSTASIQP 334
            N  +  S       P+  GT+  TS P E ST  T M  +TTM A++ T    +T +   
Sbjct: 1011 NTPLTTSTEASSPPPTAEGTSMPTSTPSEGSTPLTRMPVSTTMVASSETSTLSTTPADTS 1070

Query: 335  TSDDLVSSAECSSDDEDFVECEPSTANPTEPGIRRVPGASEVIRESSSTT 384
            T     S A  SS   D      ST +     +  VP ++ ++  S ++T
Sbjct: 1071 TPVTTYSQASSSSTTADGTSMPTSTYSEGSTPLTSVPVSTRLVVSSEAST 1120



 Score = 32.7 bits (73), Expect = 0.71
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 293 SILGTTQTTSMPPEMSTTVMETT------TTMATTTTRKNRSTASIQPTSDDLVSSAECS 346
           S L TT   S  P  ++T + ++      T+M T+T  + R+  +  P S  LV+++  S
Sbjct: 824 STLSTTPVDSNSPVTTSTEVSSSPTPAEGTSMPTSTYSEGRTPLTSMPVSTTLVATSAIS 883

Query: 347 SDDEDFVECEPSTANPTEPGIRRVPGASEVIRESSSTTG 385
           +     V+      N TE   R  P  SE     +ST G
Sbjct: 884 TLSTTPVDTSTPVTNSTE--ARSSPTTSEGTSMPTSTPG 920



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 280 KINGSVRLVGEVPSILGTTQTTSMPPEM--STTVMETTTTMATTTTRKNRSTASIQPTSD 337
           +++  VR      +  GTT T  + P M  S +     T++ ++ T      +S + T  
Sbjct: 54  QLSQHVRTGSAANTATGTTSTNVVEPRMYLSCSTNPEMTSIESSVTSDTPGVSSTRMTPT 113

Query: 338 DLVSSAECSSDDED-FVECEPSTANPTEPGIRRVPGASEVIRESSSTTGMV 387
           +  +++E +SD    F      T++PT P    VP ++      SST   V
Sbjct: 114 ESRTTSESTSDSTTLFPSSTEDTSSPTTPEGTDVPMSTPSEESISSTMAFV 164



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 293  SILGTTQTTSMPPEMSTTVMETT------TTMATTTTRKNRSTASIQPTSDDLVSSAECS 346
            S L TT   S  P +++T + ++      T+M T+T    R+  +  P S  +V+S+  S
Sbjct: 2120 STLSTTPVDSNSPVITSTEVSSSPIPTEGTSMQTSTYSDRRTPLTSMPVSTTVVASSAIS 2179

Query: 347  SDDEDFVECEPSTANPTEPGIRRVPGASEVIRESSST 383
            +     V+      N TE   R  P  SE     +ST
Sbjct: 2180 TLSTTPVDTSTPVTNSTE--ARSSPTTSEGTSMPTST 2214



 Score = 30.4 bits (67), Expect = 3.5
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 278  NIKINGSVRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSD 337
            N  +  S       P+  GT+  TS P E ST +   T+   +TTT  +  T+++  T  
Sbjct: 3250 NTPLTTSTEASSSPPTAEGTSMPTSTPSEGSTPL---TSMPVSTTTVASSETSTLSTTPA 3306

Query: 338  DLVSSAECSSDDEDFVECEPSTANPTEPGIRRVPGASEVIRESSSTTGMV 387
            D  +     S           T+ PT        G++ +   S STT +V
Sbjct: 3307 DTSTPVTTYSQASSSPPIADGTSMPTS---TYSEGSTPLTNMSFSTTPVV 3353



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 282 NGSVRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATTTT---RKNRSTASIQP--TS 336
           N  V    E  S   T + TSMP    T      T+M   TT       ST S  P  TS
Sbjct: 657 NTPVTTSTEATSSSTTAEGTSMPTSTYTEGSTPLTSMPVNTTLVASSEASTLSTTPVDTS 716

Query: 337 DDLVSSAECSSDDEDFVECEPSTANPTEPG--IRRVPGASEVIRESSSTT 384
             + +S E SS           T+ P+E    +  +P +  ++  S ++T
Sbjct: 717 TPVTTSTEASSSPTTADGASMPTSTPSEGSTPLTSMPVSKTLLTSSEAST 766



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 16/82 (19%)

Query: 292  PSILGTTQTTSMPPE-----------MSTTVMETTTTMATTTTRKNRSTASIQPTSDDLV 340
            P   GTT   SMP             +STT ++T+T M T+T   +  T     T++D+V
Sbjct: 2450 PPSEGTTPLASMPVSTTPVVSSEAGTLSTTPVDTSTPMTTSTEASSSPT-----TAEDIV 2504

Query: 341  SSAECSSDDEDFVECEPSTANP 362
                 +S+    +   P +  P
Sbjct: 2505 VPISTASEGSTLLTSIPVSTTP 2526



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 13/84 (15%)

Query: 292 PSILGTTQTTSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSS---- 347
           P    T  TTS  P    T  E T+ M T+T  +  +  +  P S  LV+S+E S+    
Sbjct: 358 PVDTSTLVTTSTEPSSLPTTAEATS-MLTSTLSEGSTPLTNMPVSTILVASSEASTTSTI 416

Query: 348 --DDEDFV------ECEPSTANPT 363
             D + FV         P+TA  T
Sbjct: 417 PVDSKTFVTTASEASSSPTTAEDT 440


>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
          Length = 1668

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 112  RLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVND 170
            + AV   TT   G++    +      F+ L++ +G++  VF +GT    ++ + +   ND
Sbjct: 1346 QFAVDMQTTSSRGLVFHTGTK---NSFMALYLSKGRL--VFALGTDGKKLRIKSKEKCND 1400

Query: 171  GKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
            GK+H V F  +G    L VD     E    GN+
Sbjct: 1401 GKWHTVVFGHDGEKGRLVVDGLRAREGSLPGNS 1433


>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
          Length = 3277

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 112  RLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVND 170
            + AV   TT   G++    +      F+ L++ +G++  VF +GT    ++ + +   ND
Sbjct: 2955 QFAVDMQTTSSRGLVFHTGTK---NSFMALYLSKGRL--VFALGTDGKKLRIKSKEKCND 3009

Query: 171  GKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
            GK+H V F  +G    L VD     E    GN+
Sbjct: 3010 GKWHTVVFGHDGEKGRLVVDGLRAREGSLPGNS 3042


>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
          Length = 1724

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 112  RLAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIK-EERTPVND 170
            + AV   TT   G++    +      F+ L++ +G++  VF +GT    ++ + +   ND
Sbjct: 1402 QFAVDMQTTSSRGLVFHTGTK---NSFMALYLSKGRL--VFALGTDGKKLRIKSKEKCND 1456

Query: 171  GKYHVVRFTRNGGNATLQVDNWPVNEHYPTGNT 203
            GK+H V F  +G    L VD     E    GN+
Sbjct: 1457 GKWHTVVFGHDGEKGRLVVDGLRAREGSLPGNS 1489


>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
          Length = 2013

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 289  GEVPSILGTTQTTSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSD 348
            G  PS + TT T S P    T+   T+TT A T+     ST S   TS     ++  +S 
Sbjct: 1932 GNTPSPVPTTSTISAPTTSITSAPTTSTTSAPTS-----STTSAPTTSTTSAPTSSTTSS 1986

Query: 349  DEDFVECEPSTANPTEPGIRRVP 371
             +      P+T+  + PG    P
Sbjct: 1987 PQTSTTSAPTTSTTSGPGTTPSP 2009



 Score = 34.3 bits (77), Expect = 0.24
 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 295  LGTTQTTSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVE 354
            L TT TTS P + STT   TT+T +  T R    T S   T     S A  +S   +   
Sbjct: 1882 LVTTSTTSTP-QTSTTYAHTTSTTSAPTAR----TTSAPTTRTTSASPASTTSGPGNTPS 1936

Query: 355  CEPSTANPTEP--GIRRVPGASEVIRESSSTT 384
              P+T+  + P   I   P  S     +SSTT
Sbjct: 1937 PVPTTSTISAPTTSITSAPTTSTTSAPTSSTT 1968


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,852,290
Number of Sequences: 37866
Number of extensions: 807248
Number of successful extensions: 5880
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 4274
Number of HSP's gapped (non-prelim): 1348
length of query: 459
length of database: 18,247,518
effective HSP length: 106
effective length of query: 353
effective length of database: 14,233,722
effective search space: 5024503866
effective search space used: 5024503866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.