Guide to the Human Genome
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Name: GTF2H2D Sequence: fasta or formatted (395aa) NCBI GI: 109809737
Description:

general transcription factor IIH, polypeptide 2D

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         19           2
 C cysteine            4.8         19           2
 D aspartate           4.8         19           1
 E glutamate           8.1         32           2
 F phenylalanine       3.3         13           1
 G glycine             6.1         24           2
 H histidine           5.1         20           2
 I isoleucine          5.3         21           2
 K lysine              5.8         23           1
 L leucine            10.1         40           2
 M methionine          2.5         10           2
 N asparagine          2.0          8           1
 P proline             5.3         21           3
 Q glutamine           3.0         12           1
 R arginine            4.8         19           1
 S serine              7.8         31           4
 T threonine           5.8         23           2
 V valine              6.3         25           3
 W tryptophan          0.5          2           1
 Y tyrosine            3.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   general transcription factor IIH, polypeptide 2D [H... 
GTF2H2C               1.000   general transcription factor IIH, polypeptide 2C [H...
GTF2H2                0.995   general transcription factor IIH, polypeptide 2, 44kD...
GTF2H2B               0.994   general transcription factor IIH, polypeptide 2B [H...
PSMD4                 0.020   proteasome 26S non-ATPase subunit 4 
ZNF510                0.011   zinc finger protein 510 
MLL3                  0.010   myeloid/lymphoid or mixed-lineage leukemia 3 
ZNF248                0.010   zinc finger protein 248 
ZNF581                0.009   zinc finger protein 581 
TRIM25                0.009   tripartite motif-containing 25 
ZNF546                0.009   zinc finger protein 546 
DCTN4                 0.009   dynactin 4 (p62) isoform a 
DCTN4                 0.009   dynactin 4 (p62) isoform b 
SCNN1B                0.008   sodium channel, nonvoltage-gated 1, beta 
ZNF267                0.008   zinc finger protein 267 
SBF2                  0.008   SET binding factor 2 
ZMAT3                 0.006   p53 target zinc finger protein isoform 1 
ZMAT3                 0.006   p53 target zinc finger protein isoform 2 
ZFP82                 0.006   zinc finger protein 82 homolog 
ZNF687                0.006   zinc finger protein 687 
ZFP14                 0.006   zinc finger protein 14-like 
LOC642424             0.006   PREDICTED: similar to hCG1742442 
LOC642424             0.006   PREDICTED: similar to hCG1742442 
LOC642424             0.006   PREDICTED: similar to hCG1742442 
LOC100287723          0.006   PREDICTED: hypothetical protein XP_002342271 
TRIM10                0.006   tripartite motif-containing 10 isoform 1 
TRIM10                0.006   tripartite motif-containing 10 isoform 2 
RNFT2                 0.006   transmembrane protein 118 isoform 1 
MTL5                  0.006   metallothionein-like 5, testis-specific isoform a [H...
DMD                   0.005   dystrophin Dp427c isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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