Guide to the Human Genome
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Name: HNRNPF Sequence: fasta or formatted (415aa) NCBI GI: 148470402
Description:

heterogeneous nuclear ribonucleoprotein F

Referenced in:

hnRNP
Capping and Splicing

Other entries for this name:
alt mRNA [415aa] heterogeneous nuclear ribonucleoprotein F
alt mRNA [415aa] heterogeneous nuclear ribonucleoprotein F
alt mRNA [415aa] heterogeneous nuclear ribonucleoprotein F
alt mRNA [415aa] heterogeneous nuclear ribonucleoprotein F
alt mRNA [415aa] heterogeneous nuclear ribonucleoprotein F
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         26           2
 C cysteine            1.4          6           1
 D aspartate           5.3         22           2
 E glutamate           8.0         33           2
 F phenylalanine       4.8         20           2
 G glycine            12.3         51           2
 H histidine           3.1         13           1
 I isoleucine          3.6         15           1
 K lysine              3.9         16           2
 L leucine             5.8         24           1
 M methionine          3.4         14           2
 N asparagine          2.7         11           1
 P proline             4.1         17           2
 Q glutamine           3.6         15           1
 R arginine            5.8         24           2
 S serine              8.9         37           2
 T threonine           4.6         19           2
 V valine              6.7         28           2
 W tryptophan          0.5          2           1
 Y tyrosine            5.3         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                1.000   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                1.000   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                1.000   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                1.000   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                1.000   heterogeneous nuclear ribonucleoprotein F 
HNRNPH1               0.770   heterogeneous nuclear ribonucleoprotein H1 
HNRNPH2               0.751   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH2               0.751   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH3               0.397   heterogeneous nuclear ribonucleoprotein H3 isoform a...
HNRNPH3               0.381   heterogeneous nuclear ribonucleoprotein H3 isoform b...
GRSF1                 0.291   G-rich RNA sequence binding factor 1 isoform 1 [Hom...
GRSF1                 0.266   G-rich RNA sequence binding factor 1 isoform 2 [Hom...
ESRP1                 0.122   RNA binding motif protein 35A isoform 5 
ESRP1                 0.122   RNA binding motif protein 35A isoform 3 
ESRP1                 0.122   RNA binding motif protein 35A isoform 4 
ESRP1                 0.122   RNA binding motif protein 35A isoform 2 
ESRP1                 0.122   RNA binding motif protein 35A isoform 1 
ESRP2                 0.102   RNA binding motif protein 35B 
RBM12                 0.079   RNA binding motif protein 12 
RBM12                 0.079   RNA binding motif protein 12 
RBM12B                0.059   RNA binding motif protein 12B 
RBM19                 0.057   RNA binding motif protein 19 
RBM19                 0.057   RNA binding motif protein 19 
RBM19                 0.057   RNA binding motif protein 19 
NCL                   0.024   nucleolin 
SART3                 0.021   squamous cell carcinoma antigen recognized by T cells...
EIF4B                 0.019   eukaryotic translation initiation factor 4B 
HNRPDL                0.018   heterogeneous nuclear ribonucleoprotein D-like [Homo...
DAZAP1                0.018   DAZ associated protein 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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