Guide to the Human Genome
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Name: USP9X Sequence: fasta or formatted (2554aa) NCBI GI: 145309311
Description:

ubiquitin specific protease 9, X-linked isoform 4

Referenced in:

Gene Families
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [2570aa] ubiquitin specific protease 9, X-linked isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3        160           2
 C cysteine            2.3         60           2
 D aspartate           6.2        158           3
 E glutamate           6.9        177           4
 F phenylalanine       4.0        101           2
 G glycine             5.1        131           2
 H histidine           2.8         71           2
 I isoleucine          5.3        136           2
 K lysine              5.1        130           2
 L leucine            11.2        287           3
 M methionine          2.3         59           2
 N asparagine          5.2        134           2
 P proline             5.4        137           3
 Q glutamine           5.3        136           2
 R arginine            5.2        133           2
 S serine              6.8        173           3
 T threonine           4.0        101           2
 V valine              5.8        148           2
 W tryptophan          1.4         37           2
 Y tyrosine            3.3         85           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 9, X-linked isoform 4 [... 
USP9X                 0.998   ubiquitin specific protease 9, X-linked isoform 3 [...
USP9Y                 0.923   ubiquitin specific protease 9, Y-linked 
USP24                 0.180   ubiquitin specific protease 24 
USP34                 0.046   ubiquitin specific protease 34 
USP48                 0.021   ubiquitin specific protease 48 isoform b 
USP48                 0.021   ubiquitin specific protease 48 isoform a 
USP47                 0.020   ubiquitin specific protease 47 
USP7                  0.019   ubiquitin specific peptidase 7 
USP40                 0.017   ubiquitin thioesterase 40 
LOC100287238          0.013   PREDICTED: hypothetical protein XP_002342474 
DUB3                  0.013   deubiquitinating enzyme 3 
USP8                  0.013   ubiquitin specific peptidase 8 
USP8                  0.013   ubiquitin specific peptidase 8 
USP8                  0.013   ubiquitin specific peptidase 8 
USP36                 0.013   ubiquitin specific peptidase 36 
LOC728373             0.012   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
USP17L3               0.012   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC100287513          0.012   PREDICTED: hypothetical protein XP_002342480 
LOC100287404          0.012   PREDICTED: hypothetical protein XP_002342477 
LOC100287364          0.012   PREDICTED: hypothetical protein XP_002342476 
LOC100287327          0.012   PREDICTED: hypothetical protein XP_002342475 
LOC100287178          0.012   PREDICTED: hypothetical protein XP_002342472 
USP12                 0.012   ubiquitin thiolesterase 12 
USP17                 0.012   ubiquitin specific peptidase 17 
LOC728379             0.012   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC728419             0.012   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.012   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.012   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.012   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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