Guide to the Human Genome
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Name: SLC38A10 Sequence: fasta or formatted (1119aa) NCBI GI: 83921602
Description:

solute carrier family 38, member 10 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [780aa] solute carrier family 38, member 10 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7        108           4
 C cysteine            1.1         12           1
 D aspartate           4.6         52           1
 E glutamate           8.0         90           2
 F phenylalanine       3.0         34           2
 G glycine            11.0        123           3
 H histidine           2.1         23           1
 I isoleucine          2.7         30           2
 K lysine              4.4         49           2
 L leucine             9.4        105           3
 M methionine          2.6         29           2
 N asparagine          1.9         21           1
 P proline             9.1        102           3
 Q glutamine           6.8         76           3
 R arginine            6.0         67           5
 S serine              5.0         56           2
 T threonine           3.0         34           2
 V valine              8.2         92           3
 W tryptophan          0.5          6           1
 Y tyrosine            0.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 38, member 10 isoform a 
SLC38A10              0.610   solute carrier family 38, member 10 isoform b 
SLC38A2               0.046   solute carrier family 38, member 2 
SLC38A3               0.037   solute carrier family 38, member 3 
SLC38A7               0.036   solute carrier family 38, member 7 
SLC38A5               0.035   solute carrier family 38, member 5 
SLC38A6               0.031   solute carrier family 38, member 6 
SLC38A1               0.028   amino acid transporter system A1 
SLC38A1               0.028   amino acid transporter system A1 
SLC38A8               0.028   solute carrier family 38, member 8 
SLC38A11              0.028   solute carrier family 38, member 11 
NEFH                  0.023   neurofilament, heavy polypeptide 200kDa 
SLC38A4               0.021   solute carrier family 38, member 4 
SLC38A4               0.021   solute carrier family 38, member 4 
RP1L1                 0.018   retinitis pigmentosa 1-like 1 
SLC32A1               0.017   solute carrier family 32, member 1 
NES                   0.017   nestin 
PRB1                  0.017   proline-rich protein BstNI subfamily 1 isoform 1 pre...
BAHCC1                0.017   BAH domain and coiled-coil containing 1 
COL7A1                0.017   alpha 1 type VII collagen precursor 
PRB3                  0.015   proline-rich protein BstNI subfamily 3 precursor [H...
ARHGAP17              0.014   nadrin isoform 2 
PRB2                  0.014   proline-rich protein BstNI subfamily 2 
COL11A1               0.014   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.014   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL3A1                0.014   collagen type III alpha 1 preproprotein 
COL4A5                0.014   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.014   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.014   type IV collagen alpha 5 isoform 3 precursor 
ARHGAP17              0.014   nadrin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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