Guide to the Human Genome
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Name: LIMK2 Sequence: fasta or formatted (617aa) NCBI GI: 8051618
Description:

LIM domain kinase 2 isoform 2b

Referenced in:

LIM Domain Proteins
Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [638aa] LIM domain kinase 2 isoform 2a
alt prot [686aa] LIM domain kinase 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         32           2
 C cysteine            3.4         21           2
 D aspartate           5.0         31           1
 E glutamate           7.3         45           2
 F phenylalanine       4.5         28           2
 G glycine             5.7         35           2
 H histidine           2.8         17           1
 I isoleucine          4.5         28           2
 K lysine              6.2         38           2
 L leucine            10.5         65           2
 M methionine          2.9         18           1
 N asparagine          3.1         19           2
 P proline             5.8         36           2
 Q glutamine           3.1         19           2
 R arginine            6.2         38           3
 S serine              7.9         49           3
 T threonine           5.5         34           2
 V valine              6.2         38           3
 W tryptophan          0.8          5           1
 Y tyrosine            3.4         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain kinase 2 isoform 2b 
LIMK2                 0.974   LIM domain kinase 2 isoform 2a 
LIMK2                 0.925   LIM domain kinase 2 isoform 1 
LIMK1                 0.508   LIM domain kinase 1 
TESK1                 0.163   testis-specific protein kinase 1 
TESK2                 0.150   testis-specific protein kinase 2 
EPHA5                 0.080   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.080   ephrin receptor EphA5 isoform a precursor 
EPHA3                 0.080   ephrin receptor EphA3 isoform a precursor 
FER                   0.080   fer (fps/fes related) tyrosine kinase 
EPHB1                 0.078   ephrin receptor EphB1 precursor 
EPHB2                 0.077   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.077   ephrin receptor EphB2 isoform 2 precursor 
EPHA8                 0.076   ephrin receptor EphA8 isoform 1 precursor 
EPHA4                 0.075   ephrin receptor EphA4 
EPHB3                 0.074   ephrin receptor EphB3 precursor 
EPHA7                 0.073   ephrin receptor EphA7 
FES                   0.073   feline sarcoma oncogene isoform 4 
FES                   0.073   feline sarcoma oncogene isoform 3 
MAP3K12               0.072   mitogen-activated protein kinase kinase kinase 12 [H...
EPHA2                 0.072   ephrin receptor EphA2 
FES                   0.072   feline sarcoma oncogene isoform 2 
FES                   0.072   feline sarcoma oncogene isoform 1 
EPHB4                 0.072   EPH receptor B4 precursor 
RIPK1                 0.069   receptor (TNFRSF)-interacting serine-threonine kinas...
STK10                 0.068   serine/threonine kinase 10 
BRAF                  0.067   B-Raf 
ITK                   0.067   IL2-inducible T-cell kinase 
MST1R                 0.067   macrophage stimulating 1 receptor precursor 
JAK3                  0.066   Janus kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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