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Search of human proteins with 139394648
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|139394648 DNA polymerase theta [Homo sapiens]
(2590 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|139394648 DNA polymerase theta [Homo sapiens] 5136 0.0
gi|110556640 DNA helicase HEL308 [Homo sapiens] 416 e-115
gi|112420958 DNA-directed DNA polymerase nu [Homo sapiens] 230 2e-59
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 136 2e-31
gi|40217847 activating signal cointegrator 1 complex subunit 3-l... 136 2e-31
gi|130484567 HFM1 protein [Homo sapiens] 135 5e-31
gi|76880486 activating signal cointegrator 1 complex subunit 3 i... 120 1e-26
gi|193211480 superkiller viralicidic activity 2-like 2 [Homo sap... 107 2e-22
gi|67782311 superkiller viralicidic activity 2-like homolog [Hom... 90 3e-17
gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo sap... 76 5e-13
gi|149274648 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Hom... 71 2e-11
gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo sapi... 49 5e-05
gi|116812616 RecQ protein-like 4 [Homo sapiens] 49 6e-05
gi|4503529 eukaryotic translation initiation factor 4A isoform 1... 47 2e-04
gi|83700235 eukaryotic translation initiation factor 4A2 [Homo s... 46 4e-04
gi|110735439 Werner syndrome protein [Homo sapiens] 45 0.001
gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent... 45 0.001
gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... 43 0.004
gi|7661920 eukaryotic translation initiation factor 4A, isoform ... 43 0.004
gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo sapi... 41 0.013
gi|13129006 nucleolar protein GU2 [Homo sapiens] 41 0.013
gi|21071032 DEAD-box protein abstrakt [Homo sapiens] 41 0.013
gi|34740327 zinc finger protein 804A [Homo sapiens] 40 0.039
gi|149408122 RNA helicase LGP2 [Homo sapiens] 39 0.051
gi|27886568 interferon induced with helicase C domain 1 [Homo sa... 39 0.051
gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens] 39 0.067
gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens] 39 0.067
gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo sa... 39 0.087
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 38 0.11
gi|51339291 sterile alpha motif domain containing 9-like [Homo s... 38 0.11
>gi|139394648 DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 5136 bits (13322), Expect = 0.0
Identities = 2590/2590 (100%), Positives = 2590/2590 (100%)
Query: 1 MNLLRRSGKRRRSESGSDSFSGSGGDSSASPQFLSGSVLSPPPGLGRCLKAAAAGECKPT 60
MNLLRRSGKRRRSESGSDSFSGSGGDSSASPQFLSGSVLSPPPGLGRCLKAAAAGECKPT
Sbjct: 1 MNLLRRSGKRRRSESGSDSFSGSGGDSSASPQFLSGSVLSPPPGLGRCLKAAAAGECKPT 60
Query: 61 VPDYERDKLLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAG 120
VPDYERDKLLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAG
Sbjct: 61 VPDYERDKLLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAG 120
Query: 121 KTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRH 180
KTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRH
Sbjct: 121 KTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRH 180
Query: 181 FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYI 240
FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYI
Sbjct: 181 FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYI 240
Query: 241 TRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGN 300
TRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGN
Sbjct: 241 TRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGN 300
Query: 301 SIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIARE 360
SIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIARE
Sbjct: 301 SIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIARE 360
Query: 361 FYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGL 420
FYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGL
Sbjct: 361 FYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGL 420
Query: 421 TFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGR 480
TFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGR
Sbjct: 421 TFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGR 480
Query: 481 AGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIV 540
AGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIV
Sbjct: 481 AGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIV 540
Query: 541 GGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTEA 600
GGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTEA
Sbjct: 541 GGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTEA 600
Query: 601 SDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPMFED 660
SDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPMFED
Sbjct: 601 SDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPMFED 660
Query: 661 WTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFF 720
WTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFF
Sbjct: 661 WTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFF 720
Query: 721 TSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQ 780
TSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQ
Sbjct: 721 TSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNMELLLSQ 780
Query: 781 FQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFK 840
FQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFK
Sbjct: 781 FQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFK 840
Query: 841 SARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNP 900
SARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNP
Sbjct: 841 SARKAVDEEEEAVEERRNMRTIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNP 900
Query: 901 CALLHSSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKSNTIFSDSYIKHSPNIVQDLN 960
CALLHSSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKSNTIFSDSYIKHSPNIVQDLN
Sbjct: 901 CALLHSSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKSNTIFSDSYIKHSPNIVQDLN 960
Query: 961 KSREHTSSFNCNFQNGNQEHQTCSIFRARKRASLDINKEKPGASQNEGKTSDKKVVQTFS 1020
KSREHTSSFNCNFQNGNQEHQTCSIFRARKRASLDINKEKPGASQNEGKTSDKKVVQTFS
Sbjct: 961 KSREHTSSFNCNFQNGNQEHQTCSIFRARKRASLDINKEKPGASQNEGKTSDKKVVQTFS 1020
Query: 1021 QKTKKAPLNFNSEKMSRSFRSWKRRKHLKRSRDSSPLKDSGACRIHLQGQTLSNPSLCED 1080
QKTKKAPLNFNSEKMSRSFRSWKRRKHLKRSRDSSPLKDSGACRIHLQGQTLSNPSLCED
Sbjct: 1021 QKTKKAPLNFNSEKMSRSFRSWKRRKHLKRSRDSSPLKDSGACRIHLQGQTLSNPSLCED 1080
Query: 1081 PFTLDEKKTEFRNSGPFAKNVSLSGKEKDNKTSFPLQIKQNCSWNITLTNDNFVEHIVTG 1140
PFTLDEKKTEFRNSGPFAKNVSLSGKEKDNKTSFPLQIKQNCSWNITLTNDNFVEHIVTG
Sbjct: 1081 PFTLDEKKTEFRNSGPFAKNVSLSGKEKDNKTSFPLQIKQNCSWNITLTNDNFVEHIVTG 1140
Query: 1141 SQSKNVTCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNVYMKHHDIHPINQYLRKQS 1200
SQSKNVTCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNVYMKHHDIHPINQYLRKQS
Sbjct: 1141 SQSKNVTCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNVYMKHHDIHPINQYLRKQS 1200
Query: 1201 HEQTSTITKQKNIIERQMPCEAVSSYINRDSNVTINCERIKLNTEENKPSHFQALGDDIS 1260
HEQTSTITKQKNIIERQMPCEAVSSYINRDSNVTINCERIKLNTEENKPSHFQALGDDIS
Sbjct: 1201 HEQTSTITKQKNIIERQMPCEAVSSYINRDSNVTINCERIKLNTEENKPSHFQALGDDIS 1260
Query: 1261 RTVIPSEVLPSAGAFSKSEGQHENFLNISRLQEKTGTYTTNKTKNNHVSDLGLVLCDFED 1320
RTVIPSEVLPSAGAFSKSEGQHENFLNISRLQEKTGTYTTNKTKNNHVSDLGLVLCDFED
Sbjct: 1261 RTVIPSEVLPSAGAFSKSEGQHENFLNISRLQEKTGTYTTNKTKNNHVSDLGLVLCDFED 1320
Query: 1321 SFYLDTQSEKIIQQMATENAKLGAKDTNLAAGIMQKSLVQQNSMNSFQKECHIPFPAEQH 1380
SFYLDTQSEKIIQQMATENAKLGAKDTNLAAGIMQKSLVQQNSMNSFQKECHIPFPAEQH
Sbjct: 1321 SFYLDTQSEKIIQQMATENAKLGAKDTNLAAGIMQKSLVQQNSMNSFQKECHIPFPAEQH 1380
Query: 1381 PLGATKIDHLDLKTVGTMKQSSDSHGVDILTPESPIFHSPILLEENGLFLKKNEVSVTDS 1440
PLGATKIDHLDLKTVGTMKQSSDSHGVDILTPESPIFHSPILLEENGLFLKKNEVSVTDS
Sbjct: 1381 PLGATKIDHLDLKTVGTMKQSSDSHGVDILTPESPIFHSPILLEENGLFLKKNEVSVTDS 1440
Query: 1441 QLNSFLQGYQTQETVKPVILLIPQKRTPTGVEGECLPVPETSLNMSDSLLFDSFSDDYLV 1500
QLNSFLQGYQTQETVKPVILLIPQKRTPTGVEGECLPVPETSLNMSDSLLFDSFSDDYLV
Sbjct: 1441 QLNSFLQGYQTQETVKPVILLIPQKRTPTGVEGECLPVPETSLNMSDSLLFDSFSDDYLV 1500
Query: 1501 KEQLPDMQMKEPLPSEVTSNHFSDSLCLQEDLIKKSNVNENQDTHQQLTCSNDESIIFSE 1560
KEQLPDMQMKEPLPSEVTSNHFSDSLCLQEDLIKKSNVNENQDTHQQLTCSNDESIIFSE
Sbjct: 1501 KEQLPDMQMKEPLPSEVTSNHFSDSLCLQEDLIKKSNVNENQDTHQQLTCSNDESIIFSE 1560
Query: 1561 MDSVQMVEALDNVDIFPVQEKNHTVVSPRALELSDPVLDEHHQGDQDGGDQDERAEKSKL 1620
MDSVQMVEALDNVDIFPVQEKNHTVVSPRALELSDPVLDEHHQGDQDGGDQDERAEKSKL
Sbjct: 1561 MDSVQMVEALDNVDIFPVQEKNHTVVSPRALELSDPVLDEHHQGDQDGGDQDERAEKSKL 1620
Query: 1621 TGTRQNHSFIWSGASFDLSPGLQRILDKVSSPLENEKLKSMTINFSSLNRKNTELNEEQE 1680
TGTRQNHSFIWSGASFDLSPGLQRILDKVSSPLENEKLKSMTINFSSLNRKNTELNEEQE
Sbjct: 1621 TGTRQNHSFIWSGASFDLSPGLQRILDKVSSPLENEKLKSMTINFSSLNRKNTELNEEQE 1680
Query: 1681 VISNLETKQVQGISFSSNNEVKSKIEMLENNANHDETSSLLPRKESNIVDDNGLIPPTPI 1740
VISNLETKQVQGISFSSNNEVKSKIEMLENNANHDETSSLLPRKESNIVDDNGLIPPTPI
Sbjct: 1681 VISNLETKQVQGISFSSNNEVKSKIEMLENNANHDETSSLLPRKESNIVDDNGLIPPTPI 1740
Query: 1741 PTSASKLTFPGILETPVNPWKTNNVLQPGESYLFGSPSDIKNHDLSPGSRNGFKDNSPIS 1800
PTSASKLTFPGILETPVNPWKTNNVLQPGESYLFGSPSDIKNHDLSPGSRNGFKDNSPIS
Sbjct: 1741 PTSASKLTFPGILETPVNPWKTNNVLQPGESYLFGSPSDIKNHDLSPGSRNGFKDNSPIS 1800
Query: 1801 DTSFSLQLSQDGLQLTPASSSSESLSIIDVASDQNLFQTFIKEWRCKKRFSISLACEKIR 1860
DTSFSLQLSQDGLQLTPASSSSESLSIIDVASDQNLFQTFIKEWRCKKRFSISLACEKIR
Sbjct: 1801 DTSFSLQLSQDGLQLTPASSSSESLSIIDVASDQNLFQTFIKEWRCKKRFSISLACEKIR 1860
Query: 1861 SLTSSKTATIGSRFKQASSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKE 1920
SLTSSKTATIGSRFKQASSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKE
Sbjct: 1861 SLTSSKTATIGSRFKQASSPQEIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKE 1920
Query: 1921 QKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGI 1980
QKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGI
Sbjct: 1921 QKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGI 1980
Query: 1981 SLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEH 2040
SLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEH
Sbjct: 1981 SLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEH 2040
Query: 2041 SGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECE 2100
SGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECE
Sbjct: 2041 SGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECE 2100
Query: 2101 SQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGS 2160
SQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGS
Sbjct: 2101 SQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGS 2160
Query: 2161 TRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCL 2220
TRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCL
Sbjct: 2161 TRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCL 2220
Query: 2221 NPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPM 2280
NPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPM
Sbjct: 2221 NPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPM 2280
Query: 2281 GRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILA 2340
GRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILA
Sbjct: 2281 GRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILA 2340
Query: 2341 HLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE 2400
HLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE
Sbjct: 2341 HLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE 2400
Query: 2401 QMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYR 2460
QMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYR
Sbjct: 2401 QMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYR 2460
Query: 2461 KAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKR 2520
KAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKR
Sbjct: 2461 KAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKR 2520
Query: 2521 KLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGA 2580
KLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGA
Sbjct: 2521 KLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKVKVKIGA 2580
Query: 2581 SWGELKDFDV 2590
SWGELKDFDV
Sbjct: 2581 SWGELKDFDV 2590
>gi|110556640 DNA helicase HEL308 [Homo sapiens]
Length = 1101
Score = 416 bits (1070), Expect = e-115
Identities = 277/806 (34%), Positives = 440/806 (54%), Gaps = 68/806 (8%)
Query: 74 WGLPKAVLEKYHSF-GVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKR 132
+ LP V + Y F G++K++EWQ CL L V E KNL+YS PTS GKTLVAE+L+L+
Sbjct: 317 YSLPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQE 376
Query: 133 VLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTS---PSRHFSSLDIAVC 189
+L RK L ILP+V++ +EK L S E+G V+ Y GS P++ + +
Sbjct: 377 LLCCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIA 436
Query: 190 TIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQA 249
TIE+ + L+N LIE ++D LG+VVVDELHM+G+ RG LE+ L KI Y
Sbjct: 437 TIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYT--------- 487
Query: 250 DLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIY--DSSM 307
S QI+GMSATL N+E + +L AE Y + FRPV L E +K+ ++IY DS
Sbjct: 488 ------SKTTQIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKA 541
Query: 308 KLVREFEPMLQVKG-------DEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIARE 360
+ F +L K D DH+V+L E I N+S L+FCPSKK CE +A++I +
Sbjct: 542 ENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVI-PNYSCLVFCPSKKNCENVAEMICK- 599
Query: 361 FYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSG-LDSVLQKTVPWGVAFHHAG 419
F + + ++KE EV+ L+ + +G L VL++T+P+GVA+HH+G
Sbjct: 600 FLSKEYLKH-------------KEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSG 646
Query: 420 LTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVG 479
LT +ER ++E A+ G++ + TSTL++GVNLPARRVI+R P L YKQM+G
Sbjct: 647 LTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIG 706
Query: 480 RAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEII 539
RAGR G+DT+GESILI + +K + + L+ KP+ +C +E T + L +I
Sbjct: 707 RAGRAGIDTIGESILILQEKDKQQVLELI---TKPLENCYSHLV-QEFTKGIQTLFLSLI 762
Query: 540 VGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTE 599
+A+ D++ + TF K + ++S+ +E+ + +L E +Q
Sbjct: 763 GLKIATNLDDIYHFMNGTFFGVQQK-----VLLKEKSLWEITVES-LRYLTEKGLLQKDT 816
Query: 600 ASDGTEGKVY--HPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPM 657
E Y H T LG A+ ++ A ++ DL++ ++G VLE+ LH++YL TP
Sbjct: 817 IYKSEEEVQYNFHITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPY 876
Query: 658 -FEDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIH 716
DW +F + +L + + VA ++GV E F+ + G+ + + ++ +
Sbjct: 877 DLVSQCNPDWMIYFRQFSQLSPAEQNVAAILGVSESFIGKKASGQAIGKKVDKN----VV 932
Query: 717 KRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRL-GWHNME 775
R + S VL L+ E + +++K+ RG IQ+L A ++ + F L +
Sbjct: 933 NRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWVYR 992
Query: 776 LLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARAN----IVEVEV 831
LL + K+LT+ ++ EL L+ V+ + RA+ LY++G+ ++ LA AN + ++
Sbjct: 993 ALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDH 1052
Query: 832 ILKNAVP--FKSARKAVDEEEEAVEE 855
+ + SA+ + E+ EA++E
Sbjct: 1053 LSRRQAKQIVSSAKMLLHEKAEALQE 1078
>gi|112420958 DNA-directed DNA polymerase nu [Homo sapiens]
Length = 900
Score = 230 bits (586), Expect = 2e-59
Identities = 180/611 (29%), Positives = 289/611 (47%), Gaps = 116/611 (18%)
Query: 1988 DPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGL---NAGSEHSGRY 2044
DP++A WL+DP P+ +V + E + + ++ G S + N Y
Sbjct: 348 DPRIAAWLIDPSDATPSFEDLVEKYC--EKSITVKVNSTYGNSSRNIVNQNVRENLKTLY 405
Query: 2045 RASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKH 2104
R +++ L S L+ L +FR +E+P LA++E + I + E E
Sbjct: 406 RLTMD----------LCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSA 455
Query: 2105 IMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRG 2164
++ A+L +E +A+ +AG F TS++ + E+LF +LKL L S R
Sbjct: 456 LLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKL-------------HLLSQRNS 502
Query: 2165 IDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFL 2224
+ + L + STS+ VLN L+ LHPLP +ILE+R++ + V L C+
Sbjct: 503 LP---RTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLL--ACMKKG- 556
Query: 2225 GMERIYPVSQSHTATGRITFTEPNIQNVPR-DFEIKMPTLVGESPPSQAVGKGLLPMGRG 2283
+ + +Q+ T TGR++ PNIQ + + +I P +G
Sbjct: 557 SISSTW--NQTGTVTGRLSAKHPNIQGISKHPIQITTPKNF-----------------KG 597
Query: 2284 KYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLS 2343
K K +++PR FV G + LAAD+SQ+ELRIL HLS
Sbjct: 598 KEDKILTISPRAM---------------------FVSSKGHTFLAADFSQIELRILTHLS 636
Query: 2344 HDRRLIQVLNTGA--DVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQ 2401
D L+++ DVF ++ ++WK + E V R+Q K++ Y ++YG G + L
Sbjct: 637 GDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC 696
Query: 2402 MGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRK 2461
+G+ +AA +++SF +Y I F + C + G V +I+GRRR LP I ++ +
Sbjct: 697 LGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLR 756
Query: 2462 AHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRK 2521
A AERQA+N +VQGSAAD+ K+A +++ F + SH T +R
Sbjct: 757 AQAERQAVNFVVQGSAADLCKLAMIHV------FTAVAASH-----------TLTAR--- 796
Query: 2522 LQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMES-------AVKLSVKLKV 2574
+ Q+HDELL+EV + + + A +V+ MES ++L V LKV
Sbjct: 797 ------------LVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844
Query: 2575 KVKIGASWGEL 2585
+ G SWG L
Sbjct: 845 SLSAGRSWGHL 855
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 136 bits (343), Expect = 2e-31
Identities = 136/435 (31%), Positives = 207/435 (47%), Gaps = 66/435 (15%)
Query: 109 KNLVYSAPTSAGKTLVAELLILKRVLEMRK----------KALFILPFVSVAKEKKYYLQ 158
+NL+ APT AGKT VA + +L+ + + K ++I P S+ +E
Sbjct: 61 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 120
Query: 159 SLFQEVGIKVDGYMGSTSPSRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDE 217
GI V G + S+ I VCT E+ + + + E L+ ++V+DE
Sbjct: 121 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIVLDE 180
Query: 218 LHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASW 277
+H+L D RG +LE L+ + R Q D V+++G+SATLPN E VA++
Sbjct: 181 IHLLHDD-RGPVLEALVARAI---RNIEMTQED--------VRLIGLSATLPNYEDVATF 228
Query: 278 LNAE----LYHTD--FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCY 331
L + L++ D FRPVPL E VG + K ++ F+ M ++ Y
Sbjct: 229 LRVDPAKGLFYFDNSFRPVPL-EQTYVGIT----EKKAIKRFQIMNEI----------VY 273
Query: 332 ETICDN---HSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELL 388
E I ++ + VL+F S+K K A I L + S V+ + E
Sbjct: 274 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQC 333
Query: 389 EVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSS 448
+ ++ L+ +P+G A HHAG+T +R ++E F I+VL +T+TL+
Sbjct: 334 KNLE------------LKDLLPYGFAIHHAGMTRVDRTLVEDLFGDKHIQVLVSTATLAW 381
Query: 449 GVNLPARRVIIR-TPIFG---GR--PLDILTYKQMVGRAGRKGVDTVGESILICKNSEKS 502
GVNLPA VII+ T ++ GR L L QM+GRAGR DT GE ILI + E
Sbjct: 382 GVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 441
Query: 503 KGIALLQGSLKPVRS 517
++LL L P+ S
Sbjct: 442 YYLSLLNQQL-PIES 455
Score = 115 bits (288), Expect = 6e-25
Identities = 130/498 (26%), Positives = 226/498 (45%), Gaps = 79/498 (15%)
Query: 110 NLVYSAPTSAGKTLVAELLILKRVLEMRK-KALFILPFVSVAKEKKY--YLQSLFQEVGI 166
N+ APT +GKT+ AE IL+ +L+ + + ++I P + + +E+ Y + + +
Sbjct: 909 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITP-MRLWQEQVYMDWYEKFQDRLNK 967
Query: 167 KVDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSH 225
KV G TS + +I + T E+ + L R + + + + VVDE+H++G +
Sbjct: 968 KVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGEN 1027
Query: 226 RGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL--- 282
G +LE++ +++ YI+ S + ++IV +S++L N + VA WL
Sbjct: 1028 -GPVLEVICSRMRYIS-----------SQIERPIRIVALSSSLSNAKDVAHWLGCSATST 1075
Query: 283 --YHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHS- 339
+H + RPVPL ++ G +I + +L+ +P+ H ++ HS
Sbjct: 1076 FNFHPNVRPVPLELHIQ-GFNISHTQTRLLSMAKPVF-------HAIT--------KHSP 1119
Query: 340 ---VLLFCPSKKWCEKLA-DIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLR 395
V++F PS+K A DI+ ++ Q + C +K+L+ +++L
Sbjct: 1120 KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQ-----RFLHCT-----EKDLIPYLEKLS 1169
Query: 396 RLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPAR 455
DS L++T+ GV + H GL+ ER ++E F G I+V+ A+ +L G+N+ A
Sbjct: 1170 ------DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAH 1223
Query: 456 RVIIR-TPIFGGRPLDILTYK-----QMVGRAGRKGVDTVGESILICKNSEKSKGIALLQ 509
VII T + G+ + Y QMVG A R D G +++C+ S+K L
Sbjct: 1224 LVIIMDTLYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1283
Query: 510 GSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGK-- 567
L PV S L + ++ +E QD Y TFL M +
Sbjct: 1284 EPL-PVESHLDHCMHDHFNAEIVTKTIE--------NKQDAVDYLTWTFLYRRMTQNPNY 1334
Query: 568 ---QGIQRNQESVQLGAI 582
QGI S L +
Sbjct: 1335 YNLQGISHRHLSDHLSEL 1352
>gi|40217847 activating signal cointegrator 1 complex subunit 3-like
1 [Homo sapiens]
Length = 2136
Score = 136 bits (343), Expect = 2e-31
Identities = 135/435 (31%), Positives = 207/435 (47%), Gaps = 66/435 (15%)
Query: 109 KNLVYSAPTSAGKTLVAELLILKRVLEMRK----------KALFILPFVSVAKEKKYYLQ 158
+NL+ APT AGKT VA + +L+ + + K ++I P S+ +E
Sbjct: 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 556
Query: 159 SLFQEVGIKVDGYMGSTSPSRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDE 217
GI V G + S+ I VCT E+ + + + E L+ ++++DE
Sbjct: 557 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDE 616
Query: 218 LHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASW 277
+H+L D RG +LE L+ + R Q D V+++G+SATLPN E VA++
Sbjct: 617 IHLLHDD-RGPVLEALVARAI---RNIEMTQED--------VRLIGLSATLPNYEDVATF 664
Query: 278 LNAE----LYHTD--FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCY 331
L + L++ D FRPVPL E VG + K ++ F+ M ++ Y
Sbjct: 665 LRVDPAKGLFYFDNSFRPVPL-EQTYVGIT----EKKAIKRFQIMNEI----------VY 709
Query: 332 ETICDN---HSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELL 388
E I ++ + VL+F S+K K A I L + S V+ + E
Sbjct: 710 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQC 769
Query: 389 EVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSS 448
+ ++ L+ +P+G A HHAG+T +R ++E F I+VL +T+TL+
Sbjct: 770 KNLE------------LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAW 817
Query: 449 GVNLPARRVIIR-TPIFG---GR--PLDILTYKQMVGRAGRKGVDTVGESILICKNSEKS 502
GVNLPA VII+ T ++ GR L L QM+GRAGR DT GE ILI + E
Sbjct: 818 GVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 877
Query: 503 KGIALLQGSLKPVRS 517
++LL L P+ S
Sbjct: 878 YYLSLLNQQL-PIES 891
Score = 120 bits (300), Expect = 2e-26
Identities = 131/497 (26%), Positives = 226/497 (45%), Gaps = 77/497 (15%)
Query: 110 NLVYSAPTSAGKTLVAELLILKRVLEMRK-KALFILPFVSVAKEKKYYLQSLFQE-VGIK 167
N+ APT +GKT+ AE IL+ +L+ + + ++I P ++A++ FQ+ + K
Sbjct: 1345 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1404
Query: 168 VDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHR 226
V G TS + +I + T E+ + L R + + + + VVDE+H++G +
Sbjct: 1405 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGEN- 1463
Query: 227 GYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL---- 282
G +LE++ +++ YI+ S + ++IV +S++L N + VA WL
Sbjct: 1464 GPVLEVICSRMRYIS-----------SQIERPIRIVALSSSLSNAKDVAHWLGCSATSTF 1512
Query: 283 -YHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHS-- 339
+H + RPVPL ++ G +I + +L+ +P+ H ++ HS
Sbjct: 1513 NFHPNVRPVPLELHIQ-GFNISHTQTRLLSMAKPVY-------HAIT--------KHSPK 1556
Query: 340 --VLLFCPSKKWCEKLA-DIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRR 396
V++F PS+K A DI+ ++ Q + C +K+L+ +++L
Sbjct: 1557 KPVIVFVPSRKQTRLTAIDILTTCAADIQRQ-----RFLHCT-----EKDLIPYLEKLS- 1605
Query: 397 LPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARR 456
DS L++T+ GV + H GL+ ER ++E F G I+V+ A+ +L G+N+ A
Sbjct: 1606 -----DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL 1660
Query: 457 VIIR-TPIFGGRPLDILTYK-----QMVGRAGRKGVDTVGESILICKNSEKSKGIALLQG 510
VII T + G+ + Y QMVG A R D G +++C+ S+K L
Sbjct: 1661 VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1720
Query: 511 SLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGK--- 567
L PV S L + ++ +E QD Y TFL M +
Sbjct: 1721 PL-PVESHLDHCMHDHFNAEIVTKTIE--------NKQDAVDYLTWTFLYRRMTQNPNYY 1771
Query: 568 --QGIQRNQESVQLGAI 582
QGI S L +
Sbjct: 1772 NLQGISHRHLSDHLSEL 1788
>gi|130484567 HFM1 protein [Homo sapiens]
Length = 1435
Score = 135 bits (340), Expect = 5e-31
Identities = 120/445 (26%), Positives = 215/445 (48%), Gaps = 57/445 (12%)
Query: 109 KNLVYSAPTSAGKTLVAELLILKRVLE-----MRKKALFILPFVSVAKEKKYYLQSLFQE 163
+N V APT +GKT+V EL I + ++E + K +++ P ++ ++ + F
Sbjct: 297 RNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGP 356
Query: 164 VGIKVDGYMGSTSPSRHFS--SLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHML 221
+G+ G T F I + T E+ + + + + + + L+ + ++DE+H++
Sbjct: 357 IGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIV 416
Query: 222 GDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLN-- 279
D +RG LE++++++ + S + + +S + ++ V +SAT+PN E +A WL+
Sbjct: 417 KDENRGPTLEVVVSRMKTVQSVSQTLKN---TSTAIPMRFVAVSATIPNAEDIAEWLSDG 473
Query: 280 ---AELYHTD--FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETI 334
A D RPV L KV SS + +F+ L K ++ +
Sbjct: 474 ERPAVCLKMDESHRPVKLQ---KVVLGFPCSSNQTEFKFDLTLNYK------IASVIQMY 524
Query: 335 CDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQL 394
D L+FC ++K ++ A ++ ++ + + +EQK+ L+
Sbjct: 525 SDQKPTLVFCATRKGVQQAASVLVKDAKFI---------------MTVEQKQRLQ----- 564
Query: 395 RRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPA 454
+ S DS L+ + G A+HHAG+ +R ++EGAF G + VL TSTL+ GVNLPA
Sbjct: 565 KYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPA 624
Query: 455 RRVIIRTPIF--GG-----RPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIAL 507
V+I++ + GG DIL QM+GRAGR DT ++++ + S + K I +
Sbjct: 625 HLVVIKSTMHYAGGLFEEYSETDIL---QMIGRAGRPQFDTTATAVIMTRLSTRDKYIQM 681
Query: 508 LQGSLKPVRSCLQRREGEEVTGSMI 532
L V S L R E + ++
Sbjct: 682 L-ACRDTVESSLHRHLIEHLNAEIV 705
>gi|76880486 activating signal cointegrator 1 complex subunit 3
isoform a [Homo sapiens]
Length = 2202
Score = 120 bits (302), Expect = 1e-26
Identities = 123/466 (26%), Positives = 213/466 (45%), Gaps = 68/466 (14%)
Query: 110 NLVYSAPTSAGKTLVAELLILKRVLEM-RKKALFILPFVSVAKEKKYYLQSLFQE-VGIK 167
N++ APT +GKT+ AEL I + + KA++I P ++ +E+ + +E +G K
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK 1403
Query: 168 VDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHR 226
V G +P + + D+ V T E+ +G+ N + + ++++DE+H+LG+ R
Sbjct: 1404 VIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGE-ER 1462
Query: 227 GYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL---- 282
G +LE+++++ +I +S V+IVG+S L N +A WLN +
Sbjct: 1463 GPVLEVIVSRTNFI-----------SSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1511
Query: 283 -YHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVL 341
+ RPVPL ++ G ++ +P Q + VL
Sbjct: 1512 NFRPSVRPVPLEVHIQ-GFPGQHYCPRMASMNKPAFQ-----------AIRSHSPAKPVL 1559
Query: 342 LFCPSKKWCEKLA-DIIAREFYNLHHQAEGLVKPSECPP--VILEQKELLEVMDQLRRLP 398
+F S++ A ++IA + E P + ++++E+ ++ +R
Sbjct: 1560 IFVSSRRQTRLTALELIA------------FLATEEDPKQWLNMDEREMENIIATVR--- 1604
Query: 399 SGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI 458
DS L+ T+ +G+ HHAGL +R +E F ++VL ATSTL+ GVN PA VI
Sbjct: 1605 ---DSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVI 1661
Query: 459 IR-TPIFGGR-----PLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSL 512
I+ T + G+ I QM+GRAGR D G+++++ + +K L
Sbjct: 1662 IKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPF 1721
Query: 513 KPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTF 558
PV S L G + + I GG ++ QD Y T+
Sbjct: 1722 -PVESSL--------LGVLSDHLNAEIAGGTITSKQDALDYITWTY 1758
Score = 120 bits (300), Expect = 2e-26
Identities = 118/431 (27%), Positives = 203/431 (47%), Gaps = 74/431 (17%)
Query: 109 KNLVYSAPTSAGKTLVAELLILKRVLE------MRK---KALFILPFVSVAKEKKYYLQS 159
+N++ APT AGKT +A L +L + + ++K K +++ P ++A E Y
Sbjct: 493 ENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSR 552
Query: 160 LFQEVGIKVDGYMGSTSPSR-HFSSLDIAVCTIERANGLINRLIEENKMD-LLGMVVVDE 217
+ +GI V G S+ + V T E+ + + + + + + ++ ++++DE
Sbjct: 553 RLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDE 612
Query: 218 LHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASW 277
+H+L + RG +LE ++ + R+ S Q+ ++I+G+SATLPN VA++
Sbjct: 613 VHLLHED-RGPVLESIVARTL---RQVESTQS--------MIRILGLSATLPNYLDVATF 660
Query: 278 LNAELY------HTDFRPVPLLES---VKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVS 328
L+ Y FRPVPL ++ +K N +Q + D V
Sbjct: 661 LHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANK---------------MQQLNNMDEV-- 703
Query: 329 LCYETICDN----HSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQ 384
CYE + H V++F ++ + A + N H P++ +L +
Sbjct: 704 -CYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIP--FFFPTQGHDYVLAE 760
Query: 385 KELLEVMD-QLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAAT 443
K++ + Q+R L P G + HHAG+ ++R+++E F G I+VL T
Sbjct: 761 KQVQRSRNKQVREL-----------FPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCT 809
Query: 444 STLSSGVNLPARRVIIR-TPIFGGR-----PLDILTYKQMVGRAGRKGVDTVGESILICK 497
+TL+ GVNLPA VII+ T I+ + L IL Q+ GRAGR D GE I+I
Sbjct: 810 ATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT 869
Query: 498 NSEKSKGIALL 508
+ + S + LL
Sbjct: 870 HDKLSHYLTLL 880
>gi|193211480 superkiller viralicidic activity 2-like 2 [Homo
sapiens]
Length = 1042
Score = 107 bits (266), Expect = 2e-22
Identities = 121/458 (26%), Positives = 204/458 (44%), Gaps = 100/458 (21%)
Query: 109 KNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKV 168
++++ SA TSAGKT+ AE I + E +++ +F P +++ +K + FQ+VG+
Sbjct: 155 QSVLVSAHTSAGKTVCAEYAIALALRE-KQRVIFTSPIKALSNQKYREMYEEFQDVGLMT 213
Query: 169 DGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 228
G + + S L V T E ++ R E M + V+ DE+H + DS RG
Sbjct: 214 ----GDVTINPTASCL---VMTTEILRSMLYRGSEV--MREVAWVIFDEIHYMRDSERGV 264
Query: 229 LLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWL------NAEL 282
+ E + L + V V +SAT+PN A W+ +
Sbjct: 265 VWE------------------ETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV 306
Query: 283 YHTDFRPVPLL----------------ESVKVGNSIYDSSMKLVREFEPMLQVKGDED-- 324
+TD+RP PL E+ ++++M+++R+ + KGD+
Sbjct: 307 IYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDL--AKGDQKGR 364
Query: 325 -----------HVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVK 373
+V + E + V++F SKK CE A + + +N
Sbjct: 365 KGGTKGPSNVFKIVKMIMER--NFQPVIIFSFSKKDCEAYALQMTKLDFNTD-------- 414
Query: 374 PSECPPVILEQKELLE---------VMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEE 424
E+K+++E + D+ ++LP ++ VL + G+ HH GL
Sbjct: 415 ---------EEKKMVEEVFSNAIDCLSDEDKKLPQ-VEHVLP-LLKRGIGIHHGGLLPIL 463
Query: 425 RDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVII-RTPIFGGRPLDILT---YKQMVGR 480
++ IE F +GLI+ L AT T + G+N+PAR V+ F G+ ++ Y QM GR
Sbjct: 464 KETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGR 523
Query: 481 AGRKGVDTVGESIL-ICKNSEKSKGIALLQGSLKPVRS 517
AGR+G+D G IL + + + G LL+GS P+ S
Sbjct: 524 AGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNS 561
>gi|67782311 superkiller viralicidic activity 2-like homolog [Homo
sapiens]
Length = 1246
Score = 89.7 bits (221), Expect = 3e-17
Identities = 123/502 (24%), Positives = 208/502 (41%), Gaps = 96/502 (19%)
Query: 49 LKAAAAGECKPTVPDYERDKLLLANWGLP---KAVLEKYHSFGVKKMFEWQAECLLLGQV 105
LK A+ P P+ + W +P + + ++ + F+W E + +
Sbjct: 262 LKEASTAVSTPEAPEPPSQE----QWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQ 317
Query: 106 ----LEGKNLVY-SAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSL 160
LE + V+ +A TSAGKT+VAE I M + ++ P +++ +K ++
Sbjct: 318 AILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTR-TIYTSPIKALSNQKFRDFRNT 376
Query: 161 FQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHM 220
F +VG+ S + +I + + +I L V+ DE+H
Sbjct: 377 FGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDL---------EWVIFDEVHY 427
Query: 221 LGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNA 280
+ D RG + E +L L + V I+ +SAT+PN A W+
Sbjct: 428 INDVERGVVWEEVLIM------------------LPDHVSIILLSATVPNALEFADWIGR 469
Query: 281 ----ELY--HTDFRPVPLLESVKVGNSI--------------------YDSSMKLVREF- 313
++Y T RPVPL + GNS Y ++++ +E
Sbjct: 470 LKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERM 529
Query: 314 ----------EPMLQVKGDEDHVVSLCYETICDNHS---VLLFCPSKKWCEKLADIIARE 360
+P Q +D V L + V++F S+ C++ A +
Sbjct: 530 SKHAQTFGAKQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLT-- 587
Query: 361 FYNLHHQAEGLVKPSECPPV-ILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAG 419
+ L SE + + Q+ L + R+LP L + + + G+ HH+G
Sbjct: 588 -------SLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLH--MSELLNRGLGVHHSG 638
Query: 420 LTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRT--PIFGGRPLDIL--TYK 475
+ ++I+E F +GL++VL AT T + GVN+PAR V+ + G D+L Y
Sbjct: 639 ILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYV 698
Query: 476 QMVGRAGRKGVDTVGESILICK 497
QM GRAGR+G+D G IL+CK
Sbjct: 699 QMAGRAGRRGLDPTGTVILLCK 720
>gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo sapiens]
Length = 1712
Score = 75.9 bits (185), Expect = 5e-13
Identities = 34/81 (41%), Positives = 57/81 (70%), Gaps = 5/81 (6%)
Query: 412 GVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVII-RTPIFGGRPLD 470
G+ +HH+ ++F+E+ ++E FR+G +RV+ AT TL+ GVN+P + V+ + ++ LD
Sbjct: 1260 GIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVY----LD 1315
Query: 471 ILTYKQMVGRAGRKGVDTVGE 491
L Y+QM GRAGR+G D +G+
Sbjct: 1316 ALNYRQMSGRAGRRGQDLMGD 1336
>gi|149274648 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Homo
sapiens]
Length = 1706
Score = 70.9 bits (172), Expect = 2e-11
Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 412 GVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVII-RTPIFGGRPLD 470
G+ +HH+ + F+E++ +E F +GLIRV+ AT TL+ G+++P + V+ + ++ LD
Sbjct: 1244 GIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVY----LD 1299
Query: 471 ILTYKQMVGRAGRKGVDTVG 490
L Y+QM GRAGR+G D +G
Sbjct: 1300 ALNYRQMSGRAGRRGQDLLG 1319
Score = 33.5 bits (75), Expect = 2.8
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 58/269 (21%)
Query: 95 WQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKK 154
WQ E LL V + ++ V APTS+GKT A +++VL R+ + ++ +V+ AK
Sbjct: 747 WQQE--LLDVVDKNESAVIVAPTSSGKT-YASYYCMEKVL--RESDVGVVVYVAPAK--- 798
Query: 155 YYLQSLFQEVGIKVDGYMGSTSPS-------------RHFSSLDIAVCTIERANGLINRL 201
SL +V V+ T P+ + + + + E L+
Sbjct: 799 ----SLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAP 854
Query: 202 IEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQI 261
+ ++ + V+ DE+H LG ELLL I
Sbjct: 855 HRQKWVERIRYVIFDEVHYLGREVGAKFWELLLVII--------------------RCPF 894
Query: 262 VGMSATLPNLELVASWLNAELYH-------TDFRPVPLLESVKVGNSIYDSSMKLVREFE 314
+ +SAT+ N L+ WL + + + + + ++ K N + D S K + +E
Sbjct: 895 LVLSATINNPNLLTKWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYK-NQSYE 953
Query: 315 PMLQVKGD-----EDHVVSLCYETICDNH 338
L + G+ E H+ S+ ++ + +H
Sbjct: 954 VRLVLYGERYNDLEKHICSVKHDDVYFDH 982
>gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo
sapiens]
Length = 824
Score = 49.3 bits (116), Expect = 5e-05
Identities = 96/434 (22%), Positives = 174/434 (40%), Gaps = 92/434 (21%)
Query: 76 LPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKR-VL 134
L + VLE + G ++ Q + + LG+ G +L+ A + GKT V + L VL
Sbjct: 69 LSRPVLEGLRAAGFERPSPVQLKAIPLGRC--GLDLIVQAKSGTGKTCVFSTIALDSLVL 126
Query: 135 EMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDG-----YMGSTSPSRHFSSLDIAVC 189
E + IL + +E + S+ +GIK++G ++G T S+ + L
Sbjct: 127 ENLSTQILIL---APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHI 183
Query: 190 TIERANGLINRLIEENKMD--LLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASC 247
+ + G I +LIE + ++ + + ++DE L + G E +
Sbjct: 184 AVG-SPGRIKQLIELDYLNPGSIRLFILDEADKLLEE--GSFQEQINW------------ 228
Query: 248 QADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSM 307
+ SSL + Q++ +SAT P E +A+ L + F + + +G Y
Sbjct: 229 ---IYSSLPASKQMLAVSATYP--EFLANALTKYMRDPTFVRLNSSDPSLIGLKQY---Y 280
Query: 308 KLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQ 367
K+V + +V ++ + + I N + L+F + LADI++ + +
Sbjct: 281 KVVNSYPLAHKVFEEKTQHLQELFSRIPFNQA-LVFSNLHSRAQHLADILSSKGF----- 334
Query: 368 AEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDI 427
P+EC + Q + L+ M +L+ FH
Sbjct: 335 ------PAECISGNMNQNQRLDAMAKLKH------------------FH----------- 359
Query: 428 IEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVD 487
RVL +T S G++ +++ + PLD TY +GRAGR G
Sbjct: 360 ---------CRVLISTDLTSRGIDAEKVNLVVNLDV----PLDWETYMHRIGRAGRFG-- 404
Query: 488 TVGESILICKNSEK 501
T+G ++ C E+
Sbjct: 405 TLGLTVTYCCRGEE 418
>gi|116812616 RecQ protein-like 4 [Homo sapiens]
Length = 1208
Score = 48.9 bits (115), Expect = 6e-05
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 416 HHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYK 475
+HAG+ ER ++ AF QG +RV+ AT G++ P R ++ G P +Y
Sbjct: 744 YHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHL----GLPPSFESYV 799
Query: 476 QMVGRAGRKG 485
Q VGRAGR G
Sbjct: 800 QAVGRAGRDG 809
>gi|4503529 eukaryotic translation initiation factor 4A isoform 1
[Homo sapiens]
Length = 406
Score = 47.4 bits (111), Expect = 2e-04
Identities = 92/459 (20%), Positives = 183/459 (39%), Gaps = 114/459 (24%)
Query: 49 LKAAAAGECKPTVPD-YERDKLLLANWG----------LPKAVLEKYHSFGVKKMFEWQA 97
+ A+ + PD E + ++ +NW L +++L +++G +K Q
Sbjct: 1 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60
Query: 98 ECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRV-LEMRK-KALFILPFVSVAKEKKY 155
+L ++G +++ A + GKT + IL+++ L+++ +AL + P +A++ +
Sbjct: 61 RAIL--PCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 118
Query: 156 YLQSLFQEVGIKVDGYMGSTSPSRHFSSLD-----IAVCTIERANGLINRLIEENKMDLL 210
+ +L +G +G T+ L I V T R ++NR K +
Sbjct: 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY--I 176
Query: 211 GMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPN 270
M V+DE + RG+ ++ D+ L++ Q+V +SAT+P+
Sbjct: 177 KMFVLDEADEM--LSRGFKDQIY----------------DIFQKLNSNTQVVLLSATMPS 218
Query: 271 --LELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVS 328
LE+ ++ P+ +L + + +++ +R+F + V+ +E + +
Sbjct: 219 DVLEVTKKFMRD--------PIRILVKKE------ELTLEGIRQF--YINVEREEWKLDT 262
Query: 329 LC--YETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKE 386
LC YET+ +V+ F N + + L E
Sbjct: 263 LCDLYETLTITQAVI-------------------FINTRRKVDWLT-------------E 290
Query: 387 LLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTL 446
+ D + V+ H + +ERD+I FR G RVL T L
Sbjct: 291 KMHARD------------------FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 332
Query: 447 SSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKG 485
+ G+++ ++I + P + Y +GR GR G
Sbjct: 333 ARGIDVQQVSLVINYDL----PTNRENYIHRIGRGGRFG 367
>gi|83700235 eukaryotic translation initiation factor 4A2 [Homo
sapiens]
Length = 407
Score = 46.2 bits (108), Expect = 4e-04
Identities = 87/441 (19%), Positives = 174/441 (39%), Gaps = 115/441 (26%)
Query: 67 DKLLLANWG----------LPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAP 116
D ++ +NW L +++L +++G +K Q ++ ++G +++ A
Sbjct: 21 DGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII--PCIKGYDVIAQAQ 78
Query: 117 TSAGKTLVAELLILKRV-LEMRK-KALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGS 174
+ GKT + IL+++ +E ++ +AL + P +A++ + + +L +G +G
Sbjct: 79 SGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGG 138
Query: 175 TSPSRHFSSLD-----IAVCTIERANGLINRLIEENKMDLLGMVVVDEL-HMLGDSHRGY 228
T+ L I V T R ++NR K + M V+DE ML +
Sbjct: 139 TNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW--IKMFVLDEADEMLSRGFKDQ 196
Query: 229 LLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPN--LELVASWLNAELYHTD 286
+ E+ L+ ++Q+V +SAT+P LE+ ++
Sbjct: 197 IYEIF-------------------QKLNTSIQVVLLSATMPTDVLEVTKKFMRD------ 231
Query: 287 FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLC--YETICDNHSVLLFC 344
P+ +L + + +++ +++F + V+ +E + +LC YET+ +V+
Sbjct: 232 --PIRILVKKE------ELTLEGIKQF--YINVEREEWKLDTLCDLYETLTITQAVI--- 278
Query: 345 PSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSV 404
F N + + L E + D
Sbjct: 279 ----------------FLNTRRKVDWLT-------------EKMHARD------------ 297
Query: 405 LQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIF 464
+ V+ H + +ERD+I FR G RVL T L+ G+++ ++I +
Sbjct: 298 ------FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 350
Query: 465 GGRPLDILTYKQMVGRAGRKG 485
P + Y +GR GR G
Sbjct: 351 ---PTNRENYIHRIGRGGRFG 368
>gi|110735439 Werner syndrome protein [Homo sapiens]
Length = 1432
Score = 44.7 bits (104), Expect = 0.001
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 416 HHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYK 475
+HAG++F R I F + I+ + AT G+N + IR I G P D+ +Y
Sbjct: 794 YHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGIN----KADIRQVIHYGAPKDMESYY 849
Query: 476 QMVGRAGRKGVDT 488
Q +GRAGR G+ +
Sbjct: 850 QEIGRAGRDGLQS 862
>gi|169218196 PREDICTED: similar to Werner syndrome ATP-dependent
helicase, partial [Homo sapiens]
Length = 1140
Score = 44.7 bits (104), Expect = 0.001
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 416 HHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYK 475
+HAG++F R I F + I+ + AT G+N + IR I G P D+ +Y
Sbjct: 502 YHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGIN----KADIRQVIHYGAPKDMESYY 557
Query: 476 QMVGRAGRKGVDT 488
Q +GRAGR G+ +
Sbjct: 558 QEIGRAGRDGLQS 570
>gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I
[Homo sapiens]
Length = 925
Score = 43.1 bits (100), Expect = 0.004
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 106 LEGKNLVYSAPTSAGKTLVAELLI---LKRVLEMRK-KALFILPFVSVAKEKKYYLQSLF 161
++GKN + APT GKT V+ L+ LK+ + +K K +F + V +++K F
Sbjct: 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
Query: 162 QEVGIKVDGYMGSTSPSRHFSSL----DIAVCTIERANGLINRLIEEN--KMDLLGMVVV 215
+ G +V G G+T+ + + DI + T + L+N L + + + +++
Sbjct: 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI---LVNNLKKGTIPSLSIFTLMIF 371
Query: 216 DELHMLGDSH 225
DE H H
Sbjct: 372 DECHNTSKQH 381
>gi|7661920 eukaryotic translation initiation factor 4A, isoform 3
[Homo sapiens]
Length = 411
Score = 43.1 bits (100), Expect = 0.004
Identities = 84/434 (19%), Positives = 171/434 (39%), Gaps = 100/434 (23%)
Query: 75 GLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRV- 133
GL + +L +++G +K Q + Q+++G++++ + + GKT + +L+ +
Sbjct: 44 GLREDLLRGIYAYGFEKPSAIQQRAIK--QIIKGRDVIAQSQSGTGKTATFSISVLQCLD 101
Query: 134 LEMRK-KALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIE 192
+++R+ +AL + P +A + + L +L + ++ +G T+ LD +
Sbjct: 102 IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 161
Query: 193 RANGLINRLIEENKMDL--LGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQAD 250
G + +I + + M+V+DE + ++G+ ++ D
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEM--LNKGFKEQIY----------------D 203
Query: 251 LASSLSNAVQIVGMSATLPN--LELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMK 308
+ L A Q+V +SATLP+ LE+ ++ + R LE +K
Sbjct: 204 VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIK----------- 252
Query: 309 LVREFEPMLQVKGDEDHVVSLC--YETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHH 366
+ + V+ +E +LC Y+T+ +V +FC +K+ + L + + + +
Sbjct: 253 -----QFFVAVEREEWKFDTLCDLYDTLTITQAV-IFCNTKRKVDWLTEKMREANFTVSS 306
Query: 367 QAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERD 426
+ QKE +M +
Sbjct: 307 MHGD-----------MPQKERESIMKE--------------------------------- 322
Query: 427 IIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGV 486
FR G RVL +T + G+++P +II + R L Y +GR+GR G
Sbjct: 323 -----FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL----YIHRIGRSGRYG- 372
Query: 487 DTVGESILICKNSE 500
G +I KN +
Sbjct: 373 -RKGVAINFVKNDD 385
>gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo
sapiens]
Length = 483
Score = 41.2 bits (95), Expect = 0.013
Identities = 87/423 (20%), Positives = 165/423 (39%), Gaps = 94/423 (22%)
Query: 106 LEGKNLVYSAPTSAGKTLVAELLILKRVLEMRK---KALFILPFVSVAKEKKYYLQSLFQ 162
L G++++ A GK+ + +L+R L+++K +A+ I+P +A + + +
Sbjct: 131 LSGRDILARAKNGTGKSGAYLIPLLER-LDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 163 EVG-IKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEEN--KMDLLGMVVVDELH 219
+G KV G T+ LD V + G I LI++ K+D + M+V+DE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 249
Query: 220 MLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLN 279
L +++ D+ +L QI+ SAT P V ++N
Sbjct: 250 KL------------------LSQDFVQIMEDIILTLPKNRQILLYSATFPLS--VQKFMN 289
Query: 280 AELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHS 339
+ L +P + N + + ++K V ++ + + + H ++ + + N S
Sbjct: 290 SHLQ----KPYEI-------NLMEELTLKGVTQYYAYVTER-QKVHCLNTLFSRLQINQS 337
Query: 340 VLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPS 399
++ FC S + E LA I++ Y+
Sbjct: 338 II-FCNSSQRVELLAKKISQLGYSCF---------------------------------- 362
Query: 400 GLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVII 459
+ HA + E R+ + FR GL R L T + G+++ A V+I
Sbjct: 363 ---------------YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVI 407
Query: 460 RTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGS-LKPVRSC 518
P TY +GR+GR G + +++ + K I G+ +KP+ S
Sbjct: 408 NFDF----PKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSN 463
Query: 519 LQR 521
+ +
Sbjct: 464 IDK 466
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 41.2 bits (95), Expect = 0.013
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 417 HAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQ 476
H + +R+I FR+G +VL AT+ + G+++P ++I++ P D+ +Y
Sbjct: 419 HGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQS----SPPQDVESYIH 474
Query: 477 MVGRAGRKGVDTVGESILICKNSEKSKG 504
GR GR G I IC + +G
Sbjct: 475 RSGRTGRAG----RTGICICFYQPRERG 498
Score = 36.6 bits (83), Expect = 0.33
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 65 ERDKLLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLV 124
E+ + +N+ + + ++ GV +F Q + G V EGK+L+ A T GKT
Sbjct: 133 EQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTF--GPVYEGKDLIAQARTGTGKTFS 190
Query: 125 AELLILKRVLEMRK--------KALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTS 176
+ +++R+ ++ K L + P +A + + + +++ + + G TS
Sbjct: 191 FAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAC--FYGGTS 248
Query: 177 PSRHFSSLDIAVCTIERANGLINRLIEENKMDL--LGMVVVDELHMLGD 223
+ + + + G I ++ ++DL L VV+DE+ + D
Sbjct: 249 YQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLD 297
>gi|21071032 DEAD-box protein abstrakt [Homo sapiens]
Length = 622
Score = 41.2 bits (95), Expect = 0.013
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 417 HAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQ 476
H G EER AFR+G VL AT S G++ PA + +I + P +I Y
Sbjct: 463 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM----PEEIENYVH 518
Query: 477 MVGRAGRKG 485
+GR GR G
Sbjct: 519 RIGRTGRSG 527
>gi|34740327 zinc finger protein 804A [Homo sapiens]
Length = 1209
Score = 39.7 bits (91), Expect = 0.039
Identities = 65/373 (17%), Positives = 136/373 (36%), Gaps = 56/373 (15%)
Query: 903 LLHSSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKSNTIFSDSYIKHSPNIVQDLNKS 962
+ S+T ++ + +E+ + + + K I S+ K + + +D +
Sbjct: 136 MFKSTTVTVRENCNEISQRVVVDSVNNQ-----QDFKYTLIHSEENTKDATTVAEDPESA 190
Query: 963 REHTSSFNC--NFQNGNQEHQTCSIFRARKRASLDINKEKPGASQNEGKTSDKKVVQTFS 1020
+T+ N + G H+ F K+AS+ + S+ + D V + FS
Sbjct: 191 NNYTAKNNQVGDQAQGIHRHKIGFSFAFPKKASVKLESSAAAFSEY---SDDASVGKGFS 247
Query: 1021 QKTKKAP------------LNFNSEKMSRSFRSWKRRKHLKRSRDSSPLKDSGACRIHLQ 1068
+K++ P + +SE+ + SF + K + + +K+ + +
Sbjct: 248 RKSRFVPSACHLQQSSPTDVLLSSEEKTNSFHPPEAMCRDKETVQTQEIKE-----VSSE 302
Query: 1069 GQTLSNPSLCEDPFTLDEKKTEFRNSGPFAKNVSLSG---KEKDNKTSFPLQIKQNCSWN 1125
L PS C+ L +NS P A + L E + ++ N S
Sbjct: 303 KDALLLPSFCKFQLQLSSDADNCQNSVPLADQIPLESVVINEDIPVSGNSFELLGNKSTV 362
Query: 1126 ITLTNDNFVEHIVTGSQSKNVTCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNVYMK 1185
+ ++ND T K+ T V ++ G E L + ++ N+
Sbjct: 363 LDMSNDCISVQATTEENVKHNEASTTEVENKNG----------PETLAPSNTEEVNI--- 409
Query: 1186 HHDIHPINQYLRKQSHEQTSTITKQKNIIERQMPCEAVSSYINRDSNVTINCE------- 1238
IH + ++Q + K ++ + Q P E + Y +++ +C
Sbjct: 410 --TIHKKTNFCKRQCEPFVPVLNKHRSTV-LQWPSEML-VYTTTKPSISYSCNPLCFDFK 465
Query: 1239 --RIKLNTEENKP 1249
++ N ++NKP
Sbjct: 466 STKVNNNLDKNKP 478
>gi|149408122 RNA helicase LGP2 [Homo sapiens]
Length = 678
Score = 39.3 bits (90), Expect = 0.051
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 91 KMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVA 150
+ ++W+ ++ LEGKN++ PT AGKT A + KR LE A V V
Sbjct: 4 RSYQWE----VIMPALEGKNIIIWLPTGAGKTRAA-AYVAKRHLETVDGAK-----VVVL 53
Query: 151 KEKKYYLQSLFQEVGIKVDG------YMGSTSPSRHFSSL----DIAVCTIERANGLINR 200
+ + + +E +DG G P F L D+ +CT E +
Sbjct: 54 VNRVHLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTS 113
Query: 201 LIEENKMDL--LGMVVVDELH 219
EE ++L ++VVDE H
Sbjct: 114 PEEEEHVELTVFSLIVVDECH 134
>gi|27886568 interferon induced with helicase C domain 1 [Homo
sapiens]
Length = 1025
Score = 39.3 bits (90), Expect = 0.051
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 106 LEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKA-----------LFILPFVSVAKEKK 154
LEGKN++ PT +GKT VA + I K L+ +KKA +L KE +
Sbjct: 320 LEGKNIIICLPTGSGKTRVA-VYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 378
Query: 155 YYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIE-RANGLINRLIEEN---KMDLL 210
+L+ ++ +G+ D + + P S DI + T + N L+N E+ ++
Sbjct: 379 PFLKKWYRVIGLSGDTQLKISFP-EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDF 437
Query: 211 GMVVVDELH 219
++++DE H
Sbjct: 438 SLIIIDECH 446
>gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 38.9 bits (89), Expect = 0.067
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 417 HAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQ 476
H + ER+ + F++ I VL AT + G+++P+ + +I + DI T+
Sbjct: 529 HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDV----ARDIDTHTH 584
Query: 477 MVGRAGRKGVDTVGESILICKNS 499
+GR GR G V ++L K+S
Sbjct: 585 RIGRTGRAGEKGVAYTLLTPKDS 607
>gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 38.9 bits (89), Expect = 0.067
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 417 HAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQ 476
H + ER+ + F++ I VL AT + G+++P+ + +I + DI T+
Sbjct: 529 HGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDV----ARDIDTHTH 584
Query: 477 MVGRAGRKGVDTVGESILICKNS 499
+GR GR G V ++L K+S
Sbjct: 585 RIGRTGRAGEKGVAYTLLTPKDS 607
>gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo
sapiens]
Length = 2316
Score = 38.5 bits (88), Expect = 0.087
Identities = 68/359 (18%), Positives = 138/359 (38%), Gaps = 41/359 (11%)
Query: 956 VQDLNKSREHTSSFNCNFQNGNQEHQTCSIFRARKRASLDINKEKPGASQNEGKTSDKKV 1015
VQ+ N R +S +F + + QT S + +++ + E+ +N +KK+
Sbjct: 44 VQESNALRNKKNSRRVSFADTIKVFQTESHMKIVRKSEM----EETETGENLLLIQNKKL 99
Query: 1016 VQTFSQKTKKAPL---NFNSEKMSRSFRSWKRRKHLKRSRDSSPL-KDSGACRIHLQGQT 1071
+ + T L +++ + F + + K + D + + D +
Sbjct: 100 EDNYCEITGMNTLLSAPIHTQMQQKEFSIIEHTRERKHANDQTVIFSDENQMDLTSSHTV 159
Query: 1072 LSNPSLCEDPFTLDEKKTEFRNSGPFAKNVSLSGKEKDNKTSFPLQIKQNCSWNITLTND 1131
+ L ++P + EK T+ + F N+ L ++ K + QN S + +
Sbjct: 160 MITKGLLDNP--ISEKSTKIDTTS-FLANLKLHTEDSRMKKEVNFSVDQNTSSENKIDFN 216
Query: 1132 NFVEHIVTGSQSKNVTCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNVYMKHHDIHP 1191
+F++ + TG C A V +K I SK N H +H
Sbjct: 217 DFIKRLKTGK------CSAFPDVPDK-----------ENFEIPIYSKEPNSASSTHQMH- 258
Query: 1192 INQYLRKQSHEQTSTITKQKNIIERQMPCEAVSSYINRDSNVTINCERIKLNTEENKPSH 1251
+ + E S IT+ + R+ + + + T+ + N+ E+K +
Sbjct: 259 ----VSLKEDENNSNITR----LFREKDDGMNFTQCHTANIQTLIPTSSETNSRESKGND 310
Query: 1252 FQALGDDISRTVIPS--EVLPSAGAFSKSEGQHENFLNISR--LQEKTGTYTTNKTKNN 1306
G+D ++LP+ G FS+ E Q +N ++++ + +G T K+K N
Sbjct: 311 ITIYGNDFMDLTFNHTLQILPATGNFSEIENQTQNAMDVTTGYGTKASGNKTVFKSKQN 369
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 38.1 bits (87), Expect = 0.11
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Query: 906 SSTCSLTHSESEVKEHTFISQTKSSYKKLTSKNKSNTIFSDSYIKHSPNIVQDLNKSREH 965
SS+ S + S +E E + S++ + KK+ K + S +S + +D +K R+
Sbjct: 261 SSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCSGH--NNSDSEEKDKSKKRKL 318
Query: 966 TSSFNCNFQNGNQEHQTCSIFRARKRASLDINKEKPGASQNEGKTSDKKVVQTFSQKT-- 1023
+ + N R++A KEKP ++E D K + S K
Sbjct: 319 HEELSSSHHN-------------REKA-----KEKPRFLKHESSREDSKWSHSDSDKKSR 360
Query: 1024 --KKAPLNFNSEKMSRSFRSWKRRKHLKRSRDSSP 1056
K +P SE+ S RS R + +RSR SP
Sbjct: 361 THKHSPEKRGSERKEGSSRSHGREERSRRSRSRSP 395
>gi|51339291 sterile alpha motif domain containing 9-like [Homo
sapiens]
Length = 1584
Score = 38.1 bits (87), Expect = 0.11
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 870 LTEREAAALIVEEARMILQQDLVEMGVQWNPCALLHSSTCSLTHSESEVKEHT--FISQT 927
L E L+++E + ++DLVEMG+ W P L+ S L E H + +
Sbjct: 37 LLSEEVTGLVLQE---LTEKDLVEMGLPWGPALLIKRSYNKLNSKSPESDNHDPGQLDNS 93
Query: 928 KSS------YKKLTSKNKSNTIFSDSYIKHSPNIVQDLNKSREHTSSFNCNFQNGNQEHQ 981
K S K T K + N++ S+ I + P ++D+ + N + N +H+
Sbjct: 94 KPSKTEHQKNPKHTKKEEENSMSSN--IDYDPREIRDIKQEESILMKENVLDEVANAKHK 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,803,041
Number of Sequences: 37866
Number of extensions: 4301921
Number of successful extensions: 12489
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 12307
Number of HSP's gapped (non-prelim): 224
length of query: 2590
length of database: 18,247,518
effective HSP length: 119
effective length of query: 2471
effective length of database: 13,741,464
effective search space: 33955157544
effective search space used: 33955157544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.