Guide to the Human Genome
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Name: VEGFA Sequence: fasta or formatted (371aa) NCBI GI: 76781483
Description:

vascular endothelial growth factor A isoform d precursor

Referenced in:

Platelets and Megakaryocytes
Receptor Tyrosine Kinases

Other entries for this name:
alt prot [412aa] vascular endothelial growth factor A isoform a precursor
alt prot [395aa] vascular endothelial growth factor A isoform b precursor
alt prot [389aa] vascular endothelial growth factor A isoform c precursor
alt prot [354aa] vascular endothelial growth factor A isoform e precursor
alt prot [327aa] vascular endothelial growth factor A isoform f precursor
alt prot [371aa] vascular endothelial growth factor A isoform g precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         36           3
 C cysteine            4.9         18           2
 D aspartate           3.2         12           1
 E glutamate           9.7         36           5
 F phenylalanine       2.2          8           1
 G glycine            10.0         37           3
 H histidine           3.2         12           2
 I isoleucine          2.2          8           1
 K lysine              4.0         15           2
 L leucine             5.9         22           3
 M methionine          2.2          8           1
 N asparagine          2.2          8           1
 P proline             7.8         29           2
 Q glutamine           4.9         18           1
 R arginine           10.0         37           3
 S serine              7.3         27           2
 T threonine           3.2         12           1
 V valine              4.6         17           2
 W tryptophan          1.3          5           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vascular endothelial growth factor A isoform d precu... 
VEGFA                 0.983   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.981   vascular endothelial growth factor A isoform g precu...
VEGFA                 0.980   vascular endothelial growth factor A isoform b precu...
VEGFA                 0.971   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.950   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.849   vascular endothelial growth factor A isoform f precu...
PGF                   0.139   placental growth factor, vascular endothelial growth...
VEGFB                 0.104   vascular endothelial growth factor B 
VEGFC                 0.071   vascular endothelial growth factor C preproprotein [H...
FIGF                  0.058   vascular endothelial growth factor D preproprotein [H...
LOC100293935          0.026   PREDICTED: hypothetical protein 
LOC100287289          0.026   PREDICTED: hypothetical protein 
LOC100287289          0.026   PREDICTED: hypothetical protein XP_002343656 
COL1A1                0.025   alpha 1 type I collagen preproprotein 
PANK1                 0.025   pantothenate kinase 1 isoform alpha 
COL6A1                0.025   collagen, type VI, alpha 1 precursor 
ADAMTS19              0.025   ADAM metallopeptidase with thrombospondin type 1 mo...
TAF4                  0.024   TBP-associated factor 4 
COL2A1                0.024   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.024   collagen, type II, alpha 1 isoform 2 precursor [Hom...
PDGFB                 0.022   platelet-derived growth factor beta isoform 2 prepro...
PDGFB                 0.022   platelet-derived growth factor beta isoform 1 preprop...
BASP1                 0.022   brain abundant, membrane attached signal protein 1 [...
LOC100133264          0.021   PREDICTED: hypothetical protein 
LOC100133264          0.021   PREDICTED: hypothetical protein 
PDGFC                 0.021   platelet-derived growth factor C precursor 
CIC                   0.020   capicua homolog 
COL5A2                0.019   alpha 2 type V collagen preproprotein 
LOC100293776          0.019   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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