Guide to the Human Genome
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Name: SPAG16 Sequence: fasta or formatted (631aa) NCBI GI: 70909324
Description:

sperm associated antigen 16 isoform 1

Referenced in:

Gene Structure
Testes and Sperm
WD Repeat Proteins

Other entries for this name:
alt prot [183aa] sperm associated antigen 16 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         36           2
 C cysteine            2.7         17           2
 D aspartate           7.0         44           2
 E glutamate           7.6         48           2
 F phenylalanine       3.2         20           2
 G glycine             6.7         42           2
 H histidine           4.3         27           2
 I isoleucine          5.1         32           1
 K lysine              7.8         49           2
 L leucine             9.8         62           2
 M methionine          2.4         15           1
 N asparagine          4.0         25           1
 P proline             3.6         23           1
 Q glutamine           3.3         21           1
 R arginine            4.1         26           1
 S serine              7.8         49           3
 T threonine           5.9         37           2
 V valine              5.5         35           2
 W tryptophan          1.6         10           1
 Y tyrosine            2.1         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sperm associated antigen 16 isoform 1 
SPAG16                0.259   sperm associated antigen 16 isoform 2 
WDR51B                0.093   WD repeat domain 51B 
WDR69                 0.090   WD repeat domain 69 
WDR5                  0.089   WD repeat domain 5 
WDR5                  0.089   WD repeat domain 5 
WDR51A                0.084   WD repeat domain 51A isoform 2 
WDR51A                0.084   WD repeat domain 51A isoform 1 
WDR5B                 0.082   WD repeat domain 5B 
WDR51A                0.079   WD repeat domain 51A isoform 3 
PAFAH1B1              0.075   platelet-activating factor acetylhydrolase, isoform I...
WDR38                 0.074   WD repeat domain 38 
APAF1                 0.071   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.071   apoptotic peptidase activating factor 1 isoform b [Ho...
PRPF4                 0.071   PRP4 pre-mRNA processing factor 4 homolog 
FBXW7                 0.067   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.067   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.067   F-box and WD repeat domain containing 7 isoform 2 [H...
KATNB1                0.065   katanin p80 subunit B 1 
TAF5                  0.065   TBP-associated factor 5 
APAF1                 0.063   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.063   apoptotic peptidase activating factor 1 isoform a [Ho...
SNRNP40               0.061   WD repeat domain 57 (U5 snRNP specific) 
GNB1                  0.061   guanine nucleotide-binding protein, beta-1 subunit [...
PLRG1                 0.059   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
CIAO1                 0.058   WD repeat domain 39 
NLE1                  0.058   Notchless gene homolog isoform a 
GNB4                  0.058   guanine nucleotide-binding protein, beta-4 subunit [...
GNB2                  0.058   guanine nucleotide-binding protein, beta-2 subunit [...
GNB5                  0.057   guanine nucleotide-binding protein, beta-5 subunit is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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