Guide to the Human Genome
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Name: DHX15 Sequence: fasta or formatted (795aa) NCBI GI: 68509926
Description:

DEAH (Asp-Glu-Ala-His) box polypeptide 15

Referenced in:

DEAD / H Helicase Family
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         53           2
 C cysteine            1.8         14           1
 D aspartate           7.0         56           2
 E glutamate           6.7         53           4
 F phenylalanine       3.0         24           1
 G glycine             4.8         38           1
 H histidine           3.1         25           1
 I isoleucine          5.4         43           2
 K lysine              5.9         47           2
 L leucine             9.3         74           3
 M methionine          3.0         24           2
 N asparagine          3.1         25           1
 P proline             5.4         43           4
 Q glutamine           4.5         36           4
 R arginine            7.7         61           2
 S serine              5.8         46           2
 T threonine           6.0         48           2
 V valine              6.2         49           3
 W tryptophan          0.6          5           1
 Y tyrosine            3.9         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAH (Asp-Glu-Ala-His) box polypeptide 15 
DHX8                  0.407   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
DHX16                 0.393   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
DHX38                 0.348   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
DHX35                 0.342   DEAH (Asp-Glu-Ala-His) box polypeptide 35 
DHX32                 0.323   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Hom...
DHX33                 0.298   DEAH (Asp-Glu-Ala-His) box polypeptide 33 
DHX40                 0.270   DEAH (Asp-Glu-Ala-His) box polypeptide 40 
DQX1                  0.259   DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...
DHX34                 0.205   DEAH (Asp-Glu-Ala-His) box polypeptide 34 
LOC100134387          0.195   PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box po...
DHX36                 0.183   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
DHX36                 0.174   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX30                 0.143   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ...
DHX30                 0.143   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ...
DHX9                  0.143   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
DHX29                 0.138   DEAH (Asp-Glu-Ala-His) box polypeptide 29 
TDRD9                 0.123   tudor domain containing 9 
DHX37                 0.106   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
YTHDC2                0.102   YTH domain containing 2 
DHX57                 0.099   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
RDBP                  0.018   RD RNA-binding protein 
RBM25                 0.017   RNA binding motif protein 25 
ZC3H13                0.017   zinc finger CCCH-type containing 13 
IK                    0.016   RED protein 
CBX8                  0.016   chromobox homolog 8 
KIAA0182              0.015   genetic suppressor element 1 isoform 2 
KIAA0182              0.015   genetic suppressor element 1 isoform 1 
SFRS12                0.015   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.015   splicing factor, arginine/serine-rich 12 isoform b [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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