Guide to the Human Genome
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Name: LGR6 Sequence: fasta or formatted (828aa) NCBI GI: 62912474
Description:

leucine-rich repeat-containing G protein-coupled receptor 6 isoform 3

Referenced in:

Leucine-rich Repeat Family
Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [967aa] leucine-rich repeat-containing G protein-coupled receptor 6 isofo...
alt prot [915aa] leucine-rich repeat-containing G protein-coupled receptor 6 isofo...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         78           3
 C cysteine            2.7         22           2
 D aspartate           3.5         29           2
 E glutamate           5.7         47           2
 F phenylalanine       4.6         38           2
 G glycine             9.2         76           4
 H histidine           2.5         21           2
 I isoleucine          3.1         26           1
 K lysine              2.5         21           1
 L leucine            16.4        136           3
 M methionine          1.7         14           2
 N asparagine          3.3         27           3
 P proline             6.9         57           2
 Q glutamine           4.2         35           2
 R arginine            4.5         37           2
 S serine              8.0         66           2
 T threonine           3.3         27           2
 V valine              5.2         43           2
 W tryptophan          1.1          9           1
 Y tyrosine            2.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich repeat-containing G protein-coupled rec... 
LGR6                  0.904   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.904   leucine-rich repeat-containing G protein-coupled rec...
LGR5                  0.431   leucine-rich repeat-containing G protein-coupled rece...
LGR4                  0.328   leucine-rich repeat-containing G protein-coupled re...
FSHR                  0.091   follicle stimulating hormone receptor isoform 1 prec...
FSHR                  0.085   follicle stimulating hormone receptor isoform 2 prec...
LHCGR                 0.076   luteinizing hormone/choriogonadotropin receptor pre...
TSHR                  0.072   thyroid stimulating hormone receptor isoform 1 precu...
CPN2                  0.062   carboxypeptidase N, polypeptide 2, 83kD 
RXFP2                 0.060   relaxin/insulin-like family peptide receptor 2 [Homo...
LRRC15                0.060   leucine rich repeat containing 15 isoform a 
LRRC15                0.060   leucine rich repeat containing 15 isoform b 
RXFP1                 0.054   relaxin/insulin-like family peptide receptor 1 [Homo...
LRIG1                 0.053   leucine-rich repeats and immunoglobulin-like domains...
IGFALS                0.051   insulin-like growth factor binding protein, acid la...
IGFALS                0.051   insulin-like growth factor binding protein, acid labi...
LINGO4                0.050   leucine rich repeat and Ig domain containing 4 [Homo...
LRRC70                0.049   synleurin 
KIAA0644              0.048   hypothetical protein LOC9865 
GP5                   0.046   glycoprotein V (platelet) 
CHADL                 0.045   chondroadherin-like 
SLIT2                 0.043   slit homolog 2 
SLIT3                 0.042   slit homolog 3 
LRIG3                 0.042   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.042   leucine-rich repeats and immunoglobulin-like domain...
LRRC4B                0.042   leucine rich repeat containing 4B 
SLIT1                 0.041   slit homolog 1 
LRRC40                0.040   leucine rich repeat containing 40 
PODNL1                0.040   podocan-like 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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