Guide to the Human Genome
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Name: STAG1 Sequence: fasta or formatted (1258aa) NCBI GI: 62243696
Description:

stromal antigen 1

Referenced in:

Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         71           3
 C cysteine            1.4         17           1
 D aspartate           6.4         81           4
 E glutamate           9.3        117           2
 F phenylalanine       3.9         49           2
 G glycine             4.9         62           2
 H histidine           2.7         34           1
 I isoleucine          5.5         69           2
 K lysine              6.0         75           2
 L leucine            10.8        136           3
 M methionine          3.6         45           2
 N asparagine          4.2         53           1
 P proline             3.7         46           3
 Q glutamine           5.0         63           2
 R arginine            6.4         81           2
 S serine              6.9         87           4
 T threonine           4.8         60           2
 V valine              5.4         68           2
 W tryptophan          0.9         11           1
 Y tyrosine            2.6         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stromal antigen 1 
STAG2                 0.700   stromal antigen 2 isoform a 
STAG2                 0.700   stromal antigen 2 isoform a 
STAG2                 0.688   stromal antigen 2 isoform b 
STAG2                 0.688   stromal antigen 2 isoform b 
STAG3                 0.436   stromal antigen 3 
STAG3L1               0.065   stromal antigen 3-like 1 isoform 1 
STAG3L4               0.059   stromal antigen 3-like 4 
STAG3L2               0.055   STAG3-like 
STAG3L3               0.054   stromal antigen 3-like 3 
STAG3L1               0.038   stromal antigen 3-like 1 isoform 2 
CIT                   0.007   citron 
RPS2                  0.005   ribosomal protein S2 
COL6A2                0.005   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.005   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.005   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
HMGN2                 0.004   high-mobility group nucleosomal binding domain 2 [Hom...
LOC729505             0.004   PREDICTED: hypothetical protein 
LOC729505             0.004   PREDICTED: hypothetical protein 
LOC729505             0.004   PREDICTED: hypothetical protein 
TPR                   0.004   nuclear pore complex-associated protein TPR 
MYT1L                 0.004   myelin transcription factor 1-like 
PIK3CG                0.003   phosphoinositide-3-kinase, catalytic, gamma polypept...
FANCD2                0.003   Fanconi anemia complementation group D2 isoform b [H...
FANCD2                0.003   Fanconi anemia complementation group D2 isoform a [H...
C10orf68              0.003   chromosome 10 open reading frame 68 
GOLGB1                0.003   golgi autoantigen, golgin subfamily b, macrogolgin ...
ACE2                  0.003   angiotensin I converting enzyme 2 precursor 
LOC100293829          0.003   PREDICTED: similar to hCG2040565 
LOC100288691          0.003   PREDICTED: similar to hCG2040565 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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