Guide to the Human Genome
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Search of human proteins with 61743975

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|61743975 SORCS receptor 1 isoform b [Homo sapiens]
         (1198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|61743975 SORCS receptor 1 isoform b [Homo sapiens]                2429   0.0  
gi|61743973 SORCS receptor 1 isoform a [Homo sapiens]                2289   0.0  
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]     1592   0.0  
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]    1011   0.0  
gi|4507157 sortilin-related receptor containing LDLR class A rep...   254   4e-67
gi|17149834 sortilin 1 preproprotein [Homo sapiens]                   226   1e-58
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    42   0.005
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    42   0.005
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            42   0.005
gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]            40   0.013
gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]            40   0.013
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ...    40   0.013
gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]            40   0.013
gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]            40   0.013
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa...    38   0.051
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]            36   0.25 
gi|41352718 deltex homolog 1 [Homo sapiens]                            36   0.25 
gi|4503657 forkhead box H1 [Homo sapiens]                              35   0.33 
gi|36287060 K(lysine) acetyltransferase 5 isoform 3 [Homo sapiens]     35   0.33 
gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]           35   0.33 
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]              35   0.33 
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       35   0.43 
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]                35   0.43 
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]        35   0.56 
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            35   0.56 
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            35   0.56 
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]            35   0.56 
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            35   0.56 
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]            35   0.56 
gi|5803080 macrophage receptor with collagenous structure [Homo ...    35   0.56 

>gi|61743975 SORCS receptor 1 isoform b [Homo sapiens]
          Length = 1198

 Score = 2429 bits (6296), Expect = 0.0
 Identities = 1198/1198 (100%), Positives = 1198/1198 (100%)

Query: 1    MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQG 60
            MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQG
Sbjct: 1    MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQG 60

Query: 61   RPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAER 120
            RPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAER
Sbjct: 61   RPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAER 120

Query: 121  GEGASRSPRGVLRDGGQQEPGTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHW 180
            GEGASRSPRGVLRDGGQQEPGTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHW
Sbjct: 121  GEGASRSPRGVLRDGGQQEPGTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHW 180

Query: 181  SGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNK 240
            SGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNK
Sbjct: 181  SGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNK 240

Query: 241  RKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSA 300
            RKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSA
Sbjct: 241  RKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSA 300

Query: 301  EFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQ 360
            EFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQ
Sbjct: 301  EFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQ 360

Query: 361  PFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDE 420
            PFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDE
Sbjct: 361  PFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDE 420

Query: 421  NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFL 480
            NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFL
Sbjct: 421  NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFL 480

Query: 481  ANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGI 540
            ANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGI
Sbjct: 481  ANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGI 540

Query: 541  IASKDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAM 600
            IASKDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAM
Sbjct: 541  IASKDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAM 600

Query: 601  KHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQL 660
            KHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQL
Sbjct: 601  KHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQL 660

Query: 661  VKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEP 720
            VKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEP
Sbjct: 661  VKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEP 720

Query: 721  CVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDG 780
            CVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDG
Sbjct: 721  CVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDG 780

Query: 781  VREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG 840
            VREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG
Sbjct: 781  VREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG 840

Query: 841  IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFV 900
            IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFV
Sbjct: 841  IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFV 900

Query: 901  TTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAG 960
            TTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAG
Sbjct: 901  TTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAG 960

Query: 961  NAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHI 1020
            NAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHI
Sbjct: 961  NAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHI 1020

Query: 1021 LVAVLPGLPTTAELFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVL 1080
            LVAVLPGLPTTAELFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVL
Sbjct: 1021 LVAVLPGLPTTAELFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVL 1080

Query: 1081 VHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKE 1140
            VHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKE
Sbjct: 1081 VHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKE 1140

Query: 1141 QEMISPVSHSESRPNVPQTELRRPGQLIDEKVESQLIGSISIVAENQSTKEIPTYVNV 1198
            QEMISPVSHSESRPNVPQTELRRPGQLIDEKVESQLIGSISIVAENQSTKEIPTYVNV
Sbjct: 1141 QEMISPVSHSESRPNVPQTELRRPGQLIDEKVESQLIGSISIVAENQSTKEIPTYVNV 1198


>gi|61743973 SORCS receptor 1 isoform a [Homo sapiens]
          Length = 1168

 Score = 2289 bits (5931), Expect = 0.0
 Identities = 1124/1126 (99%), Positives = 1126/1126 (100%)

Query: 1    MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQG 60
            MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQG
Sbjct: 1    MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQG 60

Query: 61   RPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAER 120
            RPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAER
Sbjct: 61   RPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAER 120

Query: 121  GEGASRSPRGVLRDGGQQEPGTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHW 180
            GEGASRSPRGVLRDGGQQEPGTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHW
Sbjct: 121  GEGASRSPRGVLRDGGQQEPGTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHW 180

Query: 181  SGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNK 240
            SGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNK
Sbjct: 181  SGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNK 240

Query: 241  RKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSA 300
            RKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSA
Sbjct: 241  RKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSA 300

Query: 301  EFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQ 360
            EFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQ
Sbjct: 301  EFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQ 360

Query: 361  PFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDE 420
            PFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDE
Sbjct: 361  PFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDE 420

Query: 421  NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFL 480
            NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFL
Sbjct: 421  NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFL 480

Query: 481  ANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGI 540
            ANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGI
Sbjct: 481  ANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGI 540

Query: 541  IASKDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAM 600
            IASKDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAM
Sbjct: 541  IASKDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAM 600

Query: 601  KHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQL 660
            KHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQL
Sbjct: 601  KHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQL 660

Query: 661  VKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEP 720
            VKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEP
Sbjct: 661  VKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEP 720

Query: 721  CVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDG 780
            CVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDG
Sbjct: 721  CVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDG 780

Query: 781  VREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG 840
            VREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG
Sbjct: 781  VREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG 840

Query: 841  IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFV 900
            IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFV
Sbjct: 841  IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFV 900

Query: 901  TTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAG 960
            TTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAG
Sbjct: 901  TTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAG 960

Query: 961  NAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHI 1020
            NAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHI
Sbjct: 961  NAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHI 1020

Query: 1021 LVAVLPGLPTTAELFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVL 1080
            LVAVLPGLPTTAELFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVL
Sbjct: 1021 LVAVLPGLPTTAELFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVL 1080

Query: 1081 VHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKI 1126
            VHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKR++
Sbjct: 1081 VHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRRV 1126


>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
          Length = 1222

 Score = 1592 bits (4123), Expect = 0.0
 Identities = 761/1108 (68%), Positives = 912/1108 (82%), Gaps = 2/1108 (0%)

Query: 93   RGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEPGTRER-DPDKAT 151
            RG G          RR R        ERG+  + +P    R       G+RE     +A 
Sbjct: 115  RGRGIPAPAKLGGARRSRRAQPPITQERGDAWATAPADGSRGSRPLAKGSREEVKAPRAG 174

Query: 152  RFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWRST 211
                E+LRL ST+FALTGDSAHNQAMVHWSGHNSSVILILTKLYD+NLGS+TESSLWRST
Sbjct: 175  GSAAEDLRLPSTSFALTGDSAHNQAMVHWSGHNSSVILILTKLYDFNLGSVTESSLWRST 234

Query: 212  DYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLN 271
            DYGTTYEKLNDKVGLKT+LSYLYV PTNKRKIMLL+DPE+ESS+LISSDEGATYQKYRL 
Sbjct: 235  DYGTTYEKLNDKVGLKTVLSYLYVNPTNKRKIMLLSDPEMESSILISSDEGATYQKYRLT 294

Query: 272  FYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDL 331
            FYIQSLLFHPKQEDW+LAYS DQKLYSS +FGRRWQL+ E + PNRFYWSV G +KE DL
Sbjct: 295  FYIQSLLFHPKQEDWVLAYSLDQKLYSSMDFGRRWQLMHERITPNRFYWSVAGLDKEADL 354

Query: 332  VHLEARTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDSLIVQDHYVFVQLTSGGRPHYY 391
            VH+E RT DG++HYLTCR+Q C E  R+ PF   ID  SL+VQD Y+F+Q+T+ GR  YY
Sbjct: 355  VHMEVRTTDGYAHYLTCRIQECAETTRSGPFARSIDISSLVVQDEYIFIQVTTSGRASYY 414

Query: 392  VSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLA 451
            VSYRR AFAQ+KLPKY+LPKDMH+ISTDENQVFAAVQEWNQNDTYNLYISDTRG+YFTLA
Sbjct: 415  VSYRREAFAQIKLPKYSLPKDMHIISTDENQVFAAVQEWNQNDTYNLYISDTRGIYFTLA 474

Query: 452  LENVQSSRGPEGNIMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDL 511
            +EN++SSRG  GNI+I+LYEVAGIKG+FLANKK+D+QVKT+ITYNKGRDWRLLQAPD DL
Sbjct: 475  MENIKSSRGLMGNIIIELYEVAGIKGIFLANKKVDDQVKTYITYNKGRDWRLLQAPDVDL 534

Query: 512  RGDPVHCLLPYCSLHLHLKVSENPYTSGIIASKDTAPSIIVASGNIGSELSDTDISMFVS 571
            RG PVHCLLP+CSLHLHL++SENPY+SG I+SK+TAP ++VA+GNIG ELS TDI +F+S
Sbjct: 535  RGSPVHCLLPFCSLHLHLQLSENPYSSGRISSKETAPGLVVATGNIGPELSYTDIGVFIS 594

Query: 572  SDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLF 631
            SD GNTWRQIF+EE++V +LD GG LVAMKHT LP+RHLW+SFDEG SW KY FTS+PLF
Sbjct: 595  SDGGNTWRQIFDEEYNVWFLDWGGALVAMKHTPLPVRHLWVSFDEGHSWDKYGFTSVPLF 654

Query: 632  VDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACI 691
            VDG L E G ET IMTVFGHFS RSEWQLVKVDYKSIF R C +EDY+ W L +QGE C+
Sbjct: 655  VDGALVEAGMETHIMTVFGHFSLRSEWQLVKVDYKSIFSRHCTKEDYQTWHLLNQGEPCV 714

Query: 692  MGAKRIYKKRKSERKCMQGK-YAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNP 750
            MG ++I+KKRK   +C  G+ ++G++ SEPCVC   DF+CDYGYERH   QC+PAFW+NP
Sbjct: 715  MGERKIFKKRKPGAQCALGRDHSGSVVSEPCVCANWDFECDYGYERHGESQCVPAFWYNP 774

Query: 751  SSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLT 810
            +S SKDCSLGQSYLNSTGYR++VSNNCTDG+RE+YTAK Q CPGKAPRGL +VT DG+L 
Sbjct: 775  ASPSKDCSLGQSYLNSTGYRRIVSNNCTDGLREKYTAKAQMCPGKAPRGLHVVTTDGRLV 834

Query: 811  AEQGHNVTLMVQLEEGDVQRTLIQVDFGDGIAVSYVNLSSMEDGIKHVYQNVGIFRVTVQ 870
            AEQGHN T ++ +EEGD+QRT IQ+DFGDGIAVSY N S +EDGIKHVY++ GIF+VT  
Sbjct: 835  AEQGHNATFIILMEEGDLQRTNIQLDFGDGIAVSYANFSPIEDGIKHVYKSAGIFQVTAY 894

Query: 871  VDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNN 930
             +N+LGSD+AVL+LHV CP+EHVHL +PFV  +NKEVN +AV+WPSQ+GTLTY WW+GN+
Sbjct: 895  AENNLGSDTAVLFLHVVCPVEHVHLRVPFVAIRNKEVNISAVVWPSQLGTLTYFWWFGNS 954

Query: 931  TEPLITLEGSISFRFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDY 990
            T+PLITL+ SISF F +EG +TITVQV+AGNA++QDTK IAV+E F+S  LSFSPNLD +
Sbjct: 955  TKPLITLDSSISFTFLAEGTDTITVQVAAGNALIQDTKEIAVHEYFQSQLLSFSPNLDYH 1014

Query: 991  NPDIPEWRRDIGRVIKKSLVEATGVPGQHILVAVLPGLPTTAELFVLPYQDPAGENKRST 1050
            NPDIPEWR+DIG VIK++LV+ T VP   IL+AV PGLPT+AELF+LP ++     K + 
Sbjct: 1015 NPDIPEWRKDIGNVIKRALVKVTSVPEDQILIAVFPGLPTSAELFILPPKNLTERRKGNE 1074

Query: 1051 DDLEQISELLIHTLNQNSVHFELKPGVRVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVV 1110
             DLEQI E L + LNQN V FELKPGV+V+V+   LT APLVD +  HS SAMLMLLSVV
Sbjct: 1075 GDLEQIVETLFNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHSSSAMLMLLSVV 1134

Query: 1111 FVGLAVFVIYKFKRKIPGINVYAQMQNEKEQEMISPVSHSESRPNVPQTELRRPGQLIDE 1170
            FVGLAVF+IYKFKRKIP IN+YAQ+Q++KEQEMI  VS SE+ P +  ++   P +L+D+
Sbjct: 1135 FVGLAVFLIYKFKRKIPWINIYAQVQHDKEQEMIGSVSQSENAPKITLSDFTEPEELLDK 1194

Query: 1171 KVESQLIGSISIVAENQSTKEIPTYVNV 1198
            ++++++IG I+ +A ++STKEIP   +V
Sbjct: 1195 ELDTRVIGGIATIANSESTKEIPNCTSV 1222


>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
          Length = 1159

 Score = 1011 bits (2613), Expect = 0.0
 Identities = 526/1138 (46%), Positives = 731/1138 (64%), Gaps = 37/1138 (3%)

Query: 33   GGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRALSLERA 92
            G G    +P P + P              P R+P +  PL++  L   A G    S E  
Sbjct: 12   GPGPTARAPSPGAPP--------------PPRSPRSR-PLLLLLLLLGACGAAGRSPEPG 56

Query: 93   R-GTGASMAVAARS---GRRRRSGADQEKAERGE----GASRSPRGVLRDGGQQEPGTR- 143
            R G  A +    RS   GR    G +  +A   E    G S  P     + G    G R 
Sbjct: 57   RLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRR 116

Query: 144  -ERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSI 202
             ER    A      ++ L ST+F L GD+ HNQAMVHW+G NSSVILILTK Y  ++G +
Sbjct: 117  WERAAPLAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKV 176

Query: 203  TESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDP--EIESSLLISSD 260
             ESSLWRS+D+GT+Y KL  + G+ T++   Y+CPTNKRK++L++    + + SL +S+D
Sbjct: 177  LESSLWRSSDFGTSYTKLTLQPGVTTVIDNFYICPTNKRKVILVSSSLSDRDQSLFLSAD 236

Query: 261  EGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYW 320
            EGAT+QK  + F++++L+FHPK+ED +LAY+++ KLY S++ G++W L+QE V  +  +W
Sbjct: 237  EGATFQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVTKDHVFW 296

Query: 321  SVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDSLIVQDHYVFV 380
            SV G + +PDLVH+EA+ + G   Y+TC + NC+E     PF G ID  SL VQD Y+F 
Sbjct: 297  SVSGVDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFF 356

Query: 381  QLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYI 440
            + TS  +  YYVSYRRN F  MKLPKYALPKD+ +ISTDE+QVF AVQEW Q DTYNLY 
Sbjct: 357  KATSANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQ 416

Query: 441  SDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRD 500
            SD RGV + L L++V+SSR  E +++ID+ EV G+KG+FLAN+KID +V T ITYNKGRD
Sbjct: 417  SDPRGVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRD 476

Query: 501  WRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASKDTAPSIIVASGNIGSE 560
            W  L+ P  D+ G P +C  P C LHLHL+ ++NPY SG + +KDTAP +I+ +GN+GS+
Sbjct: 477  WDYLRPPSMDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQ 536

Query: 561  LSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSW 620
            L +    M+++SD G+TWRQ+FEEEH +LYLD GGV+VA+K TS+P++ L  S DEG +W
Sbjct: 537  LVEYKEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEGLTW 596

Query: 621  SKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRP 680
            S ++FTS  +FVDG+L EPG+ETL+MTVFGH S RS+W+LVKVD++  F R+C EEDY  
Sbjct: 597  STHNFTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVDFRPSFSRQCGEEDYSS 656

Query: 681  WQLHS-QGEACIMGAKRIYKKRKSERKCMQGK-YAGAMESEPCVCTEADFDCDYGYERHS 738
            W+L + QG+ CIMG +R ++KRKS   C++G+ +  A+ S  C C ++DF CDYG+ER S
Sbjct: 657  WELSNLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFLCDYGFERSS 716

Query: 739  NGQ-----CLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCP 793
            + +     C   FWFNP S   DC+LGQ+Y +S GYRKVVSN C  GV  Q +    +CP
Sbjct: 717  SSESSTNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDMQQSQVQLQCP 776

Query: 794  GKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDGIAVSYVNLSSMED 853
               PRGL++      +    G +V  +V+ E+GDV  T  QVD GDG    YVNL+   +
Sbjct: 777  LTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGE 836

Query: 854  GIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVL 913
             I+H Y++ GI+RV+V+ +N+ G D AVL++ V  PL+ ++L +  V   N+EVN TAVL
Sbjct: 837  PIRHRYESPGIYRVSVRAENTAGHDEAVLFVQVNSPLQALYLEVVPVIGLNQEVNLTAVL 896

Query: 914  WPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAGNAILQDTKTIAVY 973
             P       + WW G++ +PL++L+ S++ RF+  G   +TVQ + GN++LQD++ + V 
Sbjct: 897  LPLNPNLTVFYWWIGHSLQPLLSLDNSVTTRFSDTGDVRVTVQAACGNSVLQDSRVLRVL 956

Query: 974  EEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHILVAVLPGLPTTAE 1033
            ++F+ + L FS  LD YNP+ PEWR D+G V+ + L + T VP + ++  V PGLPT A+
Sbjct: 957  DQFQVMPLQFSKELDAYNPNTPEWREDVGLVVTRLLSKETSVPQELLVTVVKPGLPTLAD 1016

Query: 1034 LFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVLVHAAHLTAAPLVD 1093
            L+VL    P    KRS    ++++ +    LN   + F L+ GVRVLV A   T      
Sbjct: 1017 LYVL-LPPPRPTRKRSLSSDKRLAAIQ-QVLNAQKISFLLRGGVRVLV-ALRDTGTGAEQ 1073

Query: 1094 LTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKEQEMISPVSHSE 1151
            L       A+++L  +       F++YKFKRK PG  VYAQM NEKEQEM SPVSHSE
Sbjct: 1074 LGGGGGYWAVVVLFVIGLFAAGAFILYKFKRKRPGRTVYAQMHNEKEQEMTSPVSHSE 1131


>gi|4507157 sortilin-related receptor containing LDLR class A
           repeats preproprotein [Homo sapiens]
          Length = 2214

 Score =  254 bits (648), Expect = 4e-67
 Identities = 184/668 (27%), Positives = 330/668 (49%), Gaps = 57/668 (8%)

Query: 170 DSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGL--- 226
           + +HNQ +VHW+G  S+VI+ L +     L     S ++ S DYG +++K++DK+     
Sbjct: 99  NDSHNQMVVHWAGEKSNVIVALAR-DSLALARPKSSDVYVSYDYGKSFKKISDKLNFGLG 157

Query: 227 ---KTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQ 283
              + +++  Y  P + ++ +          L I+ D   T Q + + F    LL H K 
Sbjct: 158 NRSEAVIAQFYHSPADNKRYIFAD--AYAQYLWITFDFCNTLQGFSIPFRAADLLLHSKA 215

Query: 284 EDWILAYSQ---DQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVD 340
            + +L + +   +++L+ S +FG+ W +IQE V    F W +   +K P+ +++E     
Sbjct: 216 SNLLLGFDRSHPNKQLWKSDDFGQTWIMIQEHV--KSFSWGIDPYDK-PNTIYIERHEPS 272

Query: 341 GHSHYLTCRMQNCTEANRNQPFPGYIDPDSLIVQDHYVF----VQLTSGGRP---HYYVS 393
           G+S     R  +  ++  NQ      +     ++D Y+F    V L    +      +VS
Sbjct: 273 GYSTVF--RSTDFFQSRENQEVI-LEEVRDFQLRDKYMFATKVVHLLGSEQQSSVQLWVS 329

Query: 394 YRRNAFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALE 453
           + R      +        + ++    E+QVF  V   + N+  NLYIS+  G+ F+L+LE
Sbjct: 330 FGRKPMRAAQFVTRHPINEYYIADASEDQVFVCVS--HSNNRTNLYISEAEGLKFSLSLE 387

Query: 454 NV--QSSRGPEGNIMI---------DLYEVAGIKGMFLAN----KKIDNQVKTFITYNKG 498
           NV   S  G   + ++         D + V G++G+++A        +  +++ IT++KG
Sbjct: 388 NVLYYSPGGAGSDTLVRYFANEPFADFHRVEGLQGVYIATLINGSMNEENMRSVITFDKG 447

Query: 499 RDWRLLQAPDTDLRGDPVHCLLPY-CSLHLHLKVSE--NPYTSGI-IASKDTAPSIIVAS 554
             W  LQAP     G+ ++C L   CSLHL  ++S+  N     + I SK++AP +I+A+
Sbjct: 448 GTWEFLQAPAFTGYGEKINCELSQGCSLHLAQRLSQLLNLQLRRMPILSKESAPGLIIAT 507

Query: 555 GNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSF 614
           G++G  L+ +  ++++SS AG  WR+     H   + D GG++ A+    +    L  S 
Sbjct: 508 GSVGKNLA-SKTNVYISSSAGARWREALPGPHYYTWGDHGGIITAIAQ-GMETNELKYST 565

Query: 615 DEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFG-HFSHRSEWQLVKVDYKSIFDRRC 673
           +EG +W  + F+  P+FV G+L EPGE++ + T+FG +  +   W +++V+        C
Sbjct: 566 NEGETWKTFIFSEKPVFVYGLLTEPGEKSTVFTIFGSNKENVHSWLILQVNATDALGVPC 625

Query: 674 AEEDYRPWQ-LHSQGEACIMGAKRIYKKRKSERKCMQGK-YAGAMESEPCVCTEADFDCD 731
            E DY+ W     +G  C++G K ++K+R     C  G+ +   +    C CT  D++CD
Sbjct: 626 TENDYKLWSPSDERGNECLLGHKTVFKRRTPHATCFNGEDFDRPVVVSNCSCTREDYECD 685

Query: 732 YGY---ERHSNGQCLPAFWFNPSSLSK--DCSLGQSYLNSTGYRKVVSNNCTDG-VREQY 785
           +G+   E  S   C+P   F+  S S    C +G +Y  + GYRK+  + C+ G V  + 
Sbjct: 686 FGFKMSEDLSLEVCVPDPEFSGKSYSPPVPCPVGSTYRRTRGYRKISGDTCSGGDVEARL 745

Query: 786 TAKPQKCP 793
             +   CP
Sbjct: 746 EGELVPCP 753


>gi|17149834 sortilin 1 preproprotein [Homo sapiens]
          Length = 831

 Score =  226 bits (576), Expect = 1e-58
 Identities = 169/678 (24%), Positives = 316/678 (46%), Gaps = 54/678 (7%)

Query: 146 DPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLY-DYNLGSITE 204
           + ++  R R    +L + T     D       + W G ++ VIL+LT  +    + +  +
Sbjct: 82  EDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQ 141

Query: 205 SSLWRSTDYGTTYEKLNDKVGLKTILSY--LYVCPTNKRKIMLLTDPEIESS---LLISS 259
           S L+RS DYG  ++ + D +    I +   + + P N  K++L  +    S    +  SS
Sbjct: 142 SKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSS 201

Query: 260 DEGATYQKYRLNFY-IQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNR- 317
           D    + +  L F+ +  +++ P+  D++LA S +  L+ S  FG +W+ I + V   + 
Sbjct: 202 DFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKW 261

Query: 318 ------FYWSVMGSNKEPDLVHLEA-RTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDS 370
                 F+ +    + + DL  LE  RT D    + T  ++                  S
Sbjct: 262 GSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGVKIY----------------S 305

Query: 371 LIVQDHYVFVQLTSGG---RPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAV 427
             +   ++F  + +     R  +  + + + ++  +LP     +   +++ +++ VF  V
Sbjct: 306 FGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHV 365

Query: 428 QEWNQNDTYNLYISDTRGVYFTLALE-NVQSSRGPEGNIMIDLYEVAGIKGMFLANK-KI 485
            E        ++ SD RG+ ++ +L+ ++ ++ G E     D   V  ++G+++ +    
Sbjct: 366 DEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGE----TDFTNVTSLRGVYITSVLSE 421

Query: 486 DNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIA--S 543
           DN ++T IT+++G  W  L+ P+     D        CSLH+H   S +   +  +A  S
Sbjct: 422 DNSIQTMITFDQGGRWTHLRKPENS-ECDATAKNKNECSLHIHASYSISQKLNVPMAPLS 480

Query: 544 KDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHT 603
           +  A  I++A G++G  +S     +++S D G +W ++ E  H    LD GG++VA++H+
Sbjct: 481 EPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHS 540

Query: 604 SLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSH--RSEWQLV 661
           S PI  +  S DEG+ W  Y+FT  P++  G+  EPG  ++ ++++G       S+W   
Sbjct: 541 SRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSY 600

Query: 662 KVDYKSIFDRRCAEEDYRPWQLHSQG-----EACIMGAKRIYKKRKSERKCMQGK-YAGA 715
            +D+K I +R C E+DY  W  HS       + CI+G K  + + +    C  G+ Y   
Sbjct: 601 TIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVT 660

Query: 716 MESEPCVCTEADFDCDYGYERHSN-GQCLPAFWFNPSSLSKDCSLG-QSYLNSTGYRKVV 773
            +   C+C+  DF CD+GY R  N  +C+         L + C  G + +L + GYRK+ 
Sbjct: 661 KQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDL-EFCLYGREEHLTTNGYRKIP 719

Query: 774 SNNCTDGVREQYTAKPQK 791
            + C  GV      K  K
Sbjct: 720 GDKCQGGVNPVREVKDLK 737


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 46/157 (29%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 28  APGVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRP----------L 77
           +P    G     +PHP S  R A+ P     +  PGR+ +      V P          L
Sbjct: 60  SPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRL 119

Query: 78  FSVAPGDR-ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGG 136
              APG R   S  RA    A+   AAR+   R +        RG+G+ +      R GG
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179

Query: 137 QQEPGTRER---DPDKATR-FRMEELRLTSTTFALTG 169
           Q  P T  R    P ++ R FR   L L S   + TG
Sbjct: 180 QPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTG 216


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 46/157 (29%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 28  APGVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRP----------L 77
           +P    G     +PHP S  R A+ P     +  PGR+ +      V P          L
Sbjct: 60  SPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRL 119

Query: 78  FSVAPGDR-ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGG 136
              APG R   S  RA    A+   AAR+   R +        RG+G+ +      R GG
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179

Query: 137 QQEPGTRER---DPDKATR-FRMEELRLTSTTFALTG 169
           Q  P T  R    P ++ R FR   L L S   + TG
Sbjct: 180 QPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTG 216


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 46/157 (29%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 28  APGVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRP----------L 77
           +P    G     +PHP S  R A+ P     +  PGR+ +      V P          L
Sbjct: 60  SPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRL 119

Query: 78  FSVAPGDR-ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGG 136
              APG R   S  RA    A+   AAR+   R +        RG+G+ +      R GG
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179

Query: 137 QQEPGTRER---DPDKATR-FRMEELRLTSTTFALTG 169
           Q  P T  R    P ++ R FR   L L S   + TG
Sbjct: 180 QPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTG 216


>gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 40.0 bits (92), Expect = 0.013
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 29  PGVCGGGSCCPSPHPSSA-PRSASTPRGF--SHQGRPGRAPATPLPLVVRPLFSVAPGDR 85
           PGV  G +   + H S+A P    + RG     QG PG      LP + R       G R
Sbjct: 3   PGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQ--PRGAGSR 60

Query: 86  ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQE--PGT 142
             S  RA  TGA+  V  +SG R  + + +   E GE  +R      R GG++E  PGT
Sbjct: 61  GASAPRAVRTGAAPEVVVQSGHRSHA-SKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118


>gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.013
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 29  PGVCGGGSCCPSPHPSSA-PRSASTPRGF--SHQGRPGRAPATPLPLVVRPLFSVAPGDR 85
           PGV  G +   + H S+A P    + RG     QG PG      LP + R       G R
Sbjct: 3   PGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQ--PRGAGSR 60

Query: 86  ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQE--PGT 142
             S  RA  TGA+  V  +SG R  + + +   E GE  +R      R GG++E  PGT
Sbjct: 61  GASAPRAVRTGAAPEVVVQSGHRSHA-SKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118


>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
           sapiens]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.013
 Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 28  APGVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRP----------L 77
           +P    G     +PHP S  R A+ P     +  PGR+ +      V P          L
Sbjct: 60  SPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRL 119

Query: 78  FSVAPGDR-ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGG 136
              APG R   S  RA    A+   AAR+   R +        RG+G+ +      R GG
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179

Query: 137 QQEPGTRER 145
           Q  P T  R
Sbjct: 180 QPPPLTCRR 188


>gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 40.0 bits (92), Expect = 0.013
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 29  PGVCGGGSCCPSPHPSSA-PRSASTPRGF--SHQGRPGRAPATPLPLVVRPLFSVAPGDR 85
           PGV  G +   + H S+A P    + RG     QG PG      LP + R       G R
Sbjct: 3   PGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQ--PRGAGSR 60

Query: 86  ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQE--PGT 142
             S  RA  TGA+  V  +SG R  + + +   E GE  +R      R GG++E  PGT
Sbjct: 61  GASAPRAVRTGAAPEVVVQSGHRSHA-SKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118


>gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.013
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 29  PGVCGGGSCCPSPHPSSA-PRSASTPRGF--SHQGRPGRAPATPLPLVVRPLFSVAPGDR 85
           PGV  G +   + H S+A P    + RG     QG PG      LP + R       G R
Sbjct: 3   PGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQ--PRGAGSR 60

Query: 86  ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQE--PGT 142
             S  RA  TGA+  V  +SG R  + + +   E GE  +R      R GG++E  PGT
Sbjct: 61  GASAPRAVRTGAAPEVVVQSGHRSHA-SKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118


>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
           sapiens]
          Length = 331

 Score = 38.1 bits (87), Expect = 0.051
 Identities = 43/143 (30%), Positives = 55/143 (38%), Gaps = 7/143 (4%)

Query: 12  ARLSALLAGAGLLILCA-PGVCGGGSCCPSPH--PSSAPRSASTP-RGFSHQGRPGRAPA 67
           A L ALL  A  L   A PG     +  P P   PSSAPR  S+P   F  Q  P   PA
Sbjct: 131 ASLVALLGSAFQLCRDAVPGEAALQARVPEPWVPPSSAPREPSSPLPKFEAQAPPSAPPA 190

Query: 68  TPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRS 127
                 VRP     PG R  +       G +   A R  R   +    ++  R EG  R 
Sbjct: 191 PRAEAEVRPKI---PGSREAAENDEEEPGEATGEAVREDRVTLADRGPKERPRREGKPRK 247

Query: 128 PRGVLRDGGQQEPGTRERDPDKA 150
            +    +  ++E   +E  P  A
Sbjct: 248 EKPRKEERPKKERPRKEERPRAA 270


>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 389

 Score = 35.8 bits (81), Expect = 0.25
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 39  PSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGAS 98
           P P P S P +    R      RP R P     +VV  LF V    R ++    R  G  
Sbjct: 177 PRPQPPSRPAAQPPSRPAFRSPRPVRGPHPRRAVVVAVLFGVQAPRRDVAEGGLRRDGRR 236

Query: 99  MAVAARSGRRR-----RSGADQEKAERGEGASRSPRG 130
             +A + GR          A  ++   G G SR PRG
Sbjct: 237 PGLAPQRGRGGLLLVVLHAATVQRPRLGRGPSRPPRG 273


>gi|41352718 deltex homolog 1 [Homo sapiens]
          Length = 620

 Score = 35.8 bits (81), Expect = 0.25
 Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 5   GAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQG---- 60
           G  G    R SA   GA L    AP     G   P+P P + PRS   P G    G    
Sbjct: 240 GPPGALAVRPSATFTGAALW--AAPAA---GPAEPAPPPGAPPRSPGAPGGARTPGQNNL 294

Query: 61  -RPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTG 96
            RPG    T     V    S+ PG  AL ++   GTG
Sbjct: 295 NRPGPQRTTS----VSARASIPPGVPALPVKNLNGTG 327


>gi|4503657 forkhead box H1 [Homo sapiens]
          Length = 365

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 34  GGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAP 82
           GGS   +P P  AP+S+  P G  + G     P  PLP   RPL+ + P
Sbjct: 174 GGSGEGAPWPGLAPQSSPVPAGTGNSGEEA-VPTPPLPSSERPLWPLCP 221


>gi|36287060 K(lysine) acetyltransferase 5 isoform 3 [Homo sapiens]
          Length = 461

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 48  RSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPG-----DRALSLERARGTGASMAVA 102
           + A TP   +  G PG  P +P   V R +  V+P      + A +    +   A  AVA
Sbjct: 73  KEAKTP---TKNGLPGSRPGSPEREVKRKVEVVSPATPVPSETAPASVFPQNGAARRAVA 129

Query: 103 ARSGRRRRS---GADQEKAERGEGASRSPR 129
           A+ GR+R+S   G D++  +  +G   +PR
Sbjct: 130 AQPGRKRKSNCLGTDEDSQDSSDGIPSAPR 159


>gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]
          Length = 461

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 85  RALSLERARGTGA----SMAVAARSGRRRRSGADQE-KAERGEGASRSPRGVLRD--GGQ 137
           R L L++ RG G     S  +  +  RRR  GAD E +AE GE    + R +LRD   G+
Sbjct: 366 RLLRLQQERGKGEKEPPSPGMERKRSRRRGVGADPEARAEAGEQPGTAERALLRDQPRGR 425

Query: 138 QEPGTRER 145
            + G R+R
Sbjct: 426 GQRGARQR 433


>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
          Length = 1729

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 41   PHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMA 100
            PHP  A     T    S    PGR PA P P           G + L LE      +S A
Sbjct: 1421 PHP--ADPGMETGEALSFGASPGRCPARPPP----------SGSQGL-LEEMLAASSSKA 1467

Query: 101  VAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEPGTRERDPDKATR 152
            VA R      SG      E G GA  +   VL  G    P  R +   +A++
Sbjct: 1468 VARRES--AASGLGGLLEEEGAGAGAAQEEVLEPGRDSPPSWRPQPDGEASQ 1517


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 35.0 bits (79), Expect = 0.43
 Identities = 36/133 (27%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 18  LAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPL 77
           L G    +L  P   GGG    S  P  + + +             R PA P+ L  RP 
Sbjct: 512 LPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 571

Query: 78  FSVAPGDRALSLERA-------RGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRG 130
               PG   L  E         RG       A + GRR R+G+D  +   G+   +  RG
Sbjct: 572 PVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRG 631

Query: 131 VLRDGGQQEPGTR 143
              DG    PG +
Sbjct: 632 F--DGLAGLPGEK 642


>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
          Length = 227

 Score = 35.0 bits (79), Expect = 0.43
 Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 83  GDRALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEPGT 142
           G     LER    GAS     RS RRRRSG D      G G +R+P GV      Q   T
Sbjct: 3   GSAVTVLERG---GASSPAERRSKRRRRSGGD----GGGGGGARAPEGVRAPAAGQPRAT 55

Query: 143 RERDPDKAT 151
           +   P   T
Sbjct: 56  KGAPPPPGT 64


>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
          Length = 380

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 39  PSPHPSSAPRSASTPRGF---SHQGRPGRAPATPLPLVVRPLFSVAPGDRALSLERARGT 95
           P P P   P     P G    +H    G  PA PLP    P                 G 
Sbjct: 176 PPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGP--------------GGGGA 221

Query: 96  GASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQE 139
           GA    AA +G + R  + QE+A  G  A ++  G    GG  E
Sbjct: 222 GAPGLAAAIAGAKLRKVSKQEEASGGPTAPKAESGRSGGGGLME 265


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 33  GGGSCCPSPH-----PSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRAL 87
           GGG   PSP      PS  PR   T    S +   GRA       + RP         A 
Sbjct: 208 GGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRP--------HAA 259

Query: 88  SLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEPG 141
               +RG GA+ +V+A + R  R GA   +  R +G +R     LR G    PG
Sbjct: 260 VRNSSRGRGAATSVSA-AARPTRGGARGHR--RADGRARGGCAQLRAGTPSAPG 310


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 33  GGGSCCPSPH-----PSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRAL 87
           GGG   PSP      PS  PR   T    S +   GRA       + RP         A 
Sbjct: 208 GGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRP--------HAA 259

Query: 88  SLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEPG 141
               +RG GA+ +V+A + R  R GA   +  R +G +R     LR G    PG
Sbjct: 260 VRNSSRGRGAATSVSA-AARPTRGGARGHR--RADGRARGGCAQLRAGTPSAPG 310


>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 30  GVCGG-GSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPG-DRAL 87
           GV GG G   P   P     +    R   H GR GR    PL L+V P  +   G DR  
Sbjct: 71  GVGGGVGGAQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGG 129

Query: 88  SLERAR-GTGASMAVAARSGRRRRSGADQ-----EKAERGEGASRSPRGVLRDGGQ 137
            L+ A  G    + V   +GR+RR+   Q      +   G G +R  RG +   GQ
Sbjct: 130 RLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ 185


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 33  GGGSCCPSPH-----PSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRAL 87
           GGG   PSP      PS  PR   T    S +   GRA       + RP         A 
Sbjct: 208 GGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRP--------HAA 259

Query: 88  SLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEPG 141
               +RG GA+ +V+A + R  R GA   +  R +G +R     LR G    PG
Sbjct: 260 VRNSSRGRGAATSVSA-AARPTRGGARGHR--RADGRARGGCAQLRAGTPSAPG 310


>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 396

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 30  GVCGG-GSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPG-DRAL 87
           GV GG G   P   P     +    R   H GR GR    PL L+V P  +   G DR  
Sbjct: 71  GVGGGVGGAQPGSVPLGQHLALERGRTLGH-GRVGRRDPPPLGLLVNPRVAGVDGLDRGG 129

Query: 88  SLERAR-GTGASMAVAARSGRRRRSGADQ-----EKAERGEGASRSPRGVLRDGGQ 137
            L+ A  G    + V   +GR+RR+   Q      +   G G +R  RG +   GQ
Sbjct: 130 RLDPAGIGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPAGQ 185


>gi|5803080 macrophage receptor with collagenous structure [Homo
           sapiens]
          Length = 520

 Score = 34.7 bits (78), Expect = 0.56
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 26/157 (16%)

Query: 30  GVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRALSL 89
           GV G       P     P SA +P      G PG   AT L                   
Sbjct: 307 GVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGL------------------- 347

Query: 90  ERARGTGASMAVAARSGRRRRSGADQE---KAERGEGASRSPRGVLRDGGQQ-EPGTRER 145
              +G+     +  + GR+  SG       K E+G      P+G     GQ+ + G +  
Sbjct: 348 ---KGSKGDTGLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGS 404

Query: 146 DPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSG 182
             ++  +    E    S +  + G S   +A V++SG
Sbjct: 405 SGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSG 441


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,550,421
Number of Sequences: 37866
Number of extensions: 2319695
Number of successful extensions: 8326
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 8096
Number of HSP's gapped (non-prelim): 328
length of query: 1198
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1084
effective length of database: 13,930,794
effective search space: 15100980696
effective search space used: 15100980696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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