Guide to the Human Genome
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Name: OPCML Sequence: fasta or formatted (338aa) NCBI GI: 59939900
Description:

opioid binding protein/cell adhesion molecule-like isoform b preproprotein

Referenced in:

Gene Structure
Neurons

Other entries for this name:
alt prot [345aa] opioid binding protein/cell adhesion molecule-like isoform a prep...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         24           2
 C cysteine            2.1          7           1
 D aspartate           5.3         18           2
 E glutamate           4.7         16           2
 F phenylalanine       3.3         11           2
 G glycine             6.5         22           1
 H histidine           1.5          5           1
 I isoleucine          6.5         22           2
 K lysine              4.4         15           1
 L leucine             7.1         24           2
 M methionine          2.1          7           1
 N asparagine          5.3         18           1
 P proline             5.0         17           2
 Q glutamine           3.0         10           1
 R arginine            4.7         16           1
 S serine              8.0         27           2
 T threonine           8.3         28           2
 V valine              9.5         32           2
 W tryptophan          1.8          6           1
 Y tyrosine            3.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   opioid binding protein/cell adhesion molecule-like i... 
OPCML                 0.938   opioid binding protein/cell adhesion molecule-like is...
NTM                   0.723   neurotrimin isoform 2 
NTM                   0.708   neurotrimin isoform 1 
NTM                   0.696   neurotrimin isoform 3 
NTM                   0.666   neurotrimin isoform 4 
LSAMP                 0.496   limbic system-associated membrane protein 
NEGR1                 0.440   neuronal growth regulator 1 
IGLON5                0.434   IgLON family member 5 
IGSF9B                0.126   immunoglobulin superfamily, member 9B 
PXDN                  0.113   peroxidasin 
HMCN1                 0.113   hemicentin 1 
LOC100292387          0.110   PREDICTED: similar to hemicentin 2 
HMCN2                 0.110   PREDICTED: hemicentin 2 
LOC100289200          0.110   PREDICTED: hypothetical protein XP_002342997 
TTN                   0.109   titin isoform N2-A 
PXDNL                 0.107   peroxidasin homolog-like 
HSPG2                 0.107   heparan sulfate proteoglycan 2 
NCAM1                 0.103   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.103   neural cell adhesion molecule 1 isoform 3 
HMCN2                 0.101   PREDICTED: hemicentin 2 
HMCN2                 0.101   PREDICTED: hemicentin 2 
NCAM2                 0.101   neural cell adhesion molecule 2 precursor 
NCAM1                 0.101   neural cell adhesion molecule 1 isoform 2 
IGSF9                 0.094   immunoglobulin superfamily, member 9 isoform a [Hom...
IGSF9                 0.094   immunoglobulin superfamily, member 9 isoform b [Hom...
CNTN5                 0.092   contactin 5 isoform long 
CNTN5                 0.092   contactin 5 isoform short 
CNTN2                 0.092   contactin 2 precursor 
CADM2                 0.092   immunoglobulin superfamily, member 4D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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