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Search of human proteins with 5902112
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902112 SRY (sex determining region Y)-box 30 isoform b
[Homo sapiens]
(501 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo... 1003 0.0
gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Hom... 929 0.0
gi|169168396 PREDICTED: hypothetical protein [Homo sapiens] 114 3e-25
gi|239748690 PREDICTED: hypothetical protein [Homo sapiens] 114 3e-25
gi|239742713 PREDICTED: hypothetical protein [Homo sapiens] 114 3e-25
gi|13899269 SRY-box 7 [Homo sapiens] 92 1e-18
gi|4759162 SRY-box 14 [Homo sapiens] 92 1e-18
gi|5902108 SRY-box 21 [Homo sapiens] 91 3e-18
gi|4507225 sex determining region Y [Homo sapiens] 89 9e-18
gi|5902106 SRY-box 15 [Homo sapiens] 88 2e-17
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 87 3e-17
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 87 4e-17
gi|4557853 transcription factor SOX9 [Homo sapiens] 86 6e-17
gi|4507161 SRY-box 11 [Homo sapiens] 86 6e-17
gi|41406089 SRY-box 13 [Homo sapiens] 85 1e-16
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 85 2e-16
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens] 84 2e-16
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 84 4e-16
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 83 5e-16
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 83 5e-16
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 83 5e-16
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 83 5e-16
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 82 9e-16
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 82 9e-16
gi|11967991 SRY-box 17 [Homo sapiens] 82 1e-15
gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo... 82 1e-15
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 82 1e-15
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 82 1e-15
gi|8924248 SRY-box 18 [Homo sapiens] 79 1e-14
gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens] 71 2e-12
>gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo
sapiens]
Length = 501
Score = 1003 bits (2594), Expect = 0.0
Identities = 501/501 (100%), Positives = 501/501 (100%)
Query: 1 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA 60
MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA
Sbjct: 1 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA 60
Query: 61 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT 120
SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT
Sbjct: 61 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT 120
Query: 121 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG 180
SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG
Sbjct: 121 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG 180
Query: 181 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA 240
DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA
Sbjct: 181 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA 240
Query: 241 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS 300
EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS
Sbjct: 241 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS 300
Query: 301 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP 360
LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP
Sbjct: 301 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP 360
Query: 361 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV 420
AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV
Sbjct: 361 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV 420
Query: 421 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVVHALTVGLPLAMEIFRVQ 480
SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVVHALTVGLPLAMEIFRVQ
Sbjct: 421 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVVHALTVGLPLAMEIFRVQ 480
Query: 481 CQNALVIMKTGTQNMRVSFQL 501
CQNALVIMKTGTQNMRVSFQL
Sbjct: 481 CQNALVIMKTGTQNMRVSFQL 501
>gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Homo
sapiens]
Length = 753
Score = 929 bits (2400), Expect = 0.0
Identities = 462/462 (100%), Positives = 462/462 (100%)
Query: 1 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA 60
MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA
Sbjct: 1 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA 60
Query: 61 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT 120
SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT
Sbjct: 61 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT 120
Query: 121 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG 180
SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG
Sbjct: 121 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG 180
Query: 181 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA 240
DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA
Sbjct: 181 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA 240
Query: 241 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS 300
EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS
Sbjct: 241 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS 300
Query: 301 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP 360
LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP
Sbjct: 301 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP 360
Query: 361 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV 420
AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV
Sbjct: 361 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV 420
Query: 421 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPV 462
SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPV
Sbjct: 421 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPV 462
>gi|169168396 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 114 bits (284), Expect = 3e-25
Identities = 63/95 (66%), Positives = 71/95 (74%), Gaps = 5/95 (5%)
Query: 1 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA 60
MERAR EPPPQP PL PAP LPVEGTSFWAAA++ PPS P L AAA AT+ASSC E
Sbjct: 1 MERARLEPPPQPHPLSPAPSLLPVEGTSFWAAAVKTPPSPPMLCAAAIATVASSCRE--- 57
Query: 61 SGLQP-AVRRLLQVKPEQVLLLPQPQAQNEEAAAS 94
GL P A ++LL+VK EQVLLLPQP + AA+S
Sbjct: 58 -GLVPCAAQQLLEVKLEQVLLLPQPHVPGKGAASS 91
>gi|239748690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 114 bits (284), Expect = 3e-25
Identities = 63/95 (66%), Positives = 71/95 (74%), Gaps = 5/95 (5%)
Query: 1 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA 60
MERAR EPPPQP PL PAP LPVEGTSFWAAA++ PPS P L AAA AT+ASSC E
Sbjct: 1 MERARLEPPPQPHPLSPAPSLLPVEGTSFWAAAVKTPPSPPMLCAAAIATVASSCRE--- 57
Query: 61 SGLQP-AVRRLLQVKPEQVLLLPQPQAQNEEAAAS 94
GL P A ++LL+VK EQVLLLPQP + AA+S
Sbjct: 58 -GLVPCAAQQLLEVKLEQVLLLPQPHVPGKGAASS 91
>gi|239742713 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 114 bits (284), Expect = 3e-25
Identities = 63/95 (66%), Positives = 71/95 (74%), Gaps = 5/95 (5%)
Query: 1 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA 60
MERAR EPPPQP PL PAP LPVEGTSFWAAA++ PPS P L AAA AT+ASSC E
Sbjct: 1 MERARLEPPPQPHPLSPAPSLLPVEGTSFWAAAVKTPPSPPMLCAAAIATVASSCRE--- 57
Query: 61 SGLQP-AVRRLLQVKPEQVLLLPQPQAQNEEAAAS 94
GL P A ++LL+VK EQVLLLPQP + AA+S
Sbjct: 58 -GLVPCAAQQLLEVKLEQVLLLPQPHVPGKGAASS 91
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 92.0 bits (227), Expect = 1e-18
Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 312 DVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQL 371
D L+ S +P P K ++RPMNAFMVWA+ R LA NP +NAE+S L
Sbjct: 20 DAELSDGQSPPAVPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKML 79
Query: 372 GLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKR 415
G W L+ QK+PY DEA++++ +H +++P + Y+PR K+ +
Sbjct: 80 GKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAK 123
>gi|4759162 SRY-box 14 [Homo sapiens]
Length = 240
Score = 92.0 bits (227), Expect = 1e-18
Identities = 39/74 (52%), Positives = 56/74 (75%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
H+KRPMNAFMVW+R R +A+ NP +N+EIS +LG EW LSE +K+PY DEA++++
Sbjct: 7 HIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRA 66
Query: 396 KHREEFPGWVYQPR 409
+H +E P + Y+PR
Sbjct: 67 QHMKEHPDYKYRPR 80
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 90.5 bits (223), Expect = 3e-18
Identities = 38/74 (51%), Positives = 55/74 (74%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
HVKRPMNAFMVW+R R +A+ NP +N+EIS +LG EW L+E +K+P+ DEA++++
Sbjct: 7 HVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRA 66
Query: 396 KHREEFPGWVYQPR 409
H +E P + Y+PR
Sbjct: 67 MHMKEHPDYKYRPR 80
>gi|4507225 sex determining region Y [Homo sapiens]
Length = 204
Score = 89.0 bits (219), Expect = 9e-18
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 337 VKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEK 396
VKRPMNAF+VW+R R +A NP N+EIS QLG +W L+E +K P++ EAQK++
Sbjct: 60 VKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAM 119
Query: 397 HREEFPGWVYQPRPGKRKRFPLSVS 421
HRE++P + Y+PR K K P + S
Sbjct: 120 HREKYPNYKYRPR-RKAKMLPKNCS 143
>gi|5902106 SRY-box 15 [Homo sapiens]
Length = 233
Score = 88.2 bits (217), Expect = 2e-17
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 337 VKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEK 396
VKRPMNAFMVW+ R +A+ NP +N+EIS +LG +W L E++K+P+ +EA++++ +
Sbjct: 49 VKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRAR 108
Query: 397 HREEFPGWVYQPRPGKR------KRFPLSVSNVFSGTT---QNIISTNPTTVYPYRSPTY 447
H ++P + Y+PR + R N+ SG +T P+ + YR P+Y
Sbjct: 109 HLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSY 168
Query: 448 S 448
S
Sbjct: 169 S 169
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 87.4 bits (215), Expect = 3e-17
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 331 KDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEA 390
K+ VKRPMNAFMVW+R R +A+ NP +N+EIS +LG EW LSE +K+P+ DEA
Sbjct: 35 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 94
Query: 391 QKIKEKHREEFPGWVYQPR 409
++++ H +E P + Y+PR
Sbjct: 95 KRLRALHMKEHPDYKYRPR 113
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 87.0 bits (214), Expect = 4e-17
Identities = 38/80 (47%), Positives = 56/80 (70%)
Query: 330 SKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDE 389
+K VKRPMNAFMVW+R R +A+ NP +N+EIS +LG EW +SE +K+P+ DE
Sbjct: 44 AKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDE 103
Query: 390 AQKIKEKHREEFPGWVYQPR 409
A++++ H +E P + Y+PR
Sbjct: 104 AKRLRALHMKEHPDYKYRPR 123
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 86.3 bits (212), Expect = 6e-17
Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 330 SKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDE 389
S HVKRPMNAFMVWA+ R LA P +NAE+S LG W L+E +K+P+ +E
Sbjct: 98 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEE 157
Query: 390 AQKIKEKHREEFPGWVYQPRPGKRKRFPLSVSNVFSGTTQNIISTN 435
A++++ +H+++ P + YQPR +RK + T Q IS N
Sbjct: 158 AERLRVQHKKDHPDYKYQPR--RRKSVKNGQAEAEEATEQTHISPN 201
Score = 31.2 bits (69), Expect = 2.3
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 2 ERARPEPPPQPRPLRPAP--PPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAV 59
++A P PP QP PAP PP P AA P + TL+ +S S
Sbjct: 339 QQAPPPPPQQPPQAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIK 398
Query: 60 ASGLQPA-VRRLLQVKPEQVLLLP 82
L P+ Q P+Q+ P
Sbjct: 399 TEQLSPSHYSEQQQHSPQQIAYSP 422
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 86.3 bits (212), Expect = 6e-17
Identities = 36/84 (42%), Positives = 57/84 (67%)
Query: 326 DTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKP 385
D + K +GH+KRPMNAFMVW++I R + + +P +NAEIS +LG W L + +K P
Sbjct: 38 DPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIP 97
Query: 386 YYDEAQKIKEKHREEFPGWVYQPR 409
+ EA++++ KH ++P + Y+PR
Sbjct: 98 FIREAERLRLKHMADYPDYKYRPR 121
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 85.1 bits (209), Expect = 1e-16
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 8/95 (8%)
Query: 329 FSKDRNG-HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYY 387
F + RN H+KRPMNAFMVWA+ R + +A P +N+ IS LG W ++ ++K+PYY
Sbjct: 415 FPESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYY 474
Query: 388 DEAQKIKEKHREEFPGWVYQPRP-------GKRKR 415
+E ++ +H E++P + Y+PRP GKR R
Sbjct: 475 EEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLR 509
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 84.7 bits (208), Expect = 2e-16
Identities = 39/91 (42%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 320 SDAGIPDTP-FSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKL 378
S G D P + K +GH+KRPMNAFMVW++I R + + +P +NAEIS +LG W L
Sbjct: 41 STGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLL 100
Query: 379 SEEQKKPYYDEAQKIKEKHREEFPGWVYQPR 409
+ K P+ EA++++ KH ++P + Y+PR
Sbjct: 101 KDSDKIPFIREAERLRLKHMADYPDYKYRPR 131
>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 446
Score = 84.3 bits (207), Expect = 2e-16
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
HVKRPMNAFMVWA+ R LA P +NAE+S LG W LSE +K+P+ +EA++++
Sbjct: 101 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRV 160
Query: 396 KHREEFPGWVYQPRPGK 412
+H+++ P + YQPR K
Sbjct: 161 QHKKDHPDYKYQPRRRK 177
>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
Length = 446
Score = 83.6 bits (205), Expect = 4e-16
Identities = 35/73 (47%), Positives = 54/73 (73%)
Query: 337 VKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEK 396
VKRPMNAFMVW+R R +A NP +N+EIS +LG +W L++ +K+P+ DEA++++
Sbjct: 139 VKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAV 198
Query: 397 HREEFPGWVYQPR 409
H +E+P + Y+PR
Sbjct: 199 HMKEYPDYKYRPR 211
Score = 33.9 bits (76), Expect = 0.35
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 7 EPPPQPRPLRPAPPPLP----VEGTSFWAAAMEPPPSSPTLSAAASATLASSCG------ 56
+PP P P PP LP + + M PP + ++ AA+A AS G
Sbjct: 283 QPPSMSSP--PPPPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSA 340
Query: 57 ---EAVASGLQP-------AVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPD 106
A A G QP A + + P ++ +P + A+ S +A L R
Sbjct: 341 TAAAAAAYGQQPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAIASHSQRACLGDLRDM 400
Query: 107 LRLLQPP--TASDGATSRP--ELHPV 128
+ + PP A+D A+ P LH V
Sbjct: 401 ISMYLPPGGDAADAASPLPGGRLHGV 426
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 83.2 bits (204), Expect = 5e-16
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
H+KRPMNAFMVWA+ R + +A P +N+ IS LG W +S ++K+PYY+E ++ +
Sbjct: 633 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 692
Query: 396 KHREEFPGWVYQPRP 410
H E++P + Y+PRP
Sbjct: 693 IHLEKYPNYKYKPRP 707
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 83.2 bits (204), Expect = 5e-16
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
H+KRPMNAFMVWA+ R + +A P +N+ IS LG W +S ++K+PYY+E ++ +
Sbjct: 593 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 652
Query: 396 KHREEFPGWVYQPRP 410
H E++P + Y+PRP
Sbjct: 653 IHLEKYPNYKYKPRP 667
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 83.2 bits (204), Expect = 5e-16
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
H+KRPMNAFMVWA+ R + +A P +N+ IS LG W +S ++K+PYY+E ++ +
Sbjct: 596 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 655
Query: 396 KHREEFPGWVYQPRP 410
H E++P + Y+PRP
Sbjct: 656 IHLEKYPNYKYKPRP 670
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 83.2 bits (204), Expect = 5e-16
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
H+KRPMNAFMVWA+ R + +A P +N+ IS LG W +S ++K+PYY+E ++ +
Sbjct: 600 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 659
Query: 396 KHREEFPGWVYQPRP 410
H E++P + Y+PRP
Sbjct: 660 IHLEKYPNYKYKPRP 674
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 82.4 bits (202), Expect = 9e-16
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 336 HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKE 395
HVKRPMNAFMVWA+ R LA P +NAE+S LG W L+E K+P+ +EA++++
Sbjct: 103 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRM 162
Query: 396 KHREEFPGWVYQPRPGK 412
+H+++ P + YQPR K
Sbjct: 163 QHKKDHPDYKYQPRRRK 179
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 82.4 bits (202), Expect = 9e-16
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 319 PSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKL 378
P++ G + + K +GH+KRPMNAFMVW++ R + P +NAEIS +LG W L
Sbjct: 22 PAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLL 81
Query: 379 SEEQKKPYYDEAQKIKEKHREEFPGWVYQPR 409
+ +K P+ EA++++ KH ++P + Y+PR
Sbjct: 82 QDSEKIPFVREAERLRLKHMADYPDYKYRPR 112
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 319 PSDAGIPDTPFSKDRN-GHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNK 377
P+++G P + + ++RPMNAFMVWA+ R LA+ NP +NAE+S LG W
Sbjct: 49 PANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKA 108
Query: 378 LSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKR 413
L+ +K+P+ +EA++++ +H ++ P + Y+PR K+
Sbjct: 109 LTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ 144
>gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo
sapiens]
Length = 377
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 6/95 (6%)
Query: 322 AGIPDTPFSKDRNG------HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEW 375
AG+ ++ ++ G H+KRPMNAFMVWA+ R + +A P +N+ IS LG W
Sbjct: 149 AGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRW 208
Query: 376 NKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRP 410
++ +K+PYY+E ++ ++H E++P + Y+PRP
Sbjct: 209 KAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRP 243
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 6/95 (6%)
Query: 322 AGIPDTPFSKDRNG------HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEW 375
AG+ ++ ++ G H+KRPMNAFMVWA+ R + +A P +N+ IS LG W
Sbjct: 522 AGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRW 581
Query: 376 NKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRP 410
++ +K+PYY+E ++ ++H E++P + Y+PRP
Sbjct: 582 KAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRP 616
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/95 (37%), Positives = 60/95 (63%), Gaps = 6/95 (6%)
Query: 322 AGIPDTPFSKDRNG------HVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEW 375
AG+ ++ ++ G H+KRPMNAFMVWA+ R + +A P +N+ IS LG W
Sbjct: 535 AGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRW 594
Query: 376 NKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRP 410
++ +K+PYY+E ++ ++H E++P + Y+PRP
Sbjct: 595 KAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRP 629
>gi|8924248 SRY-box 18 [Homo sapiens]
Length = 384
Score = 79.0 bits (193), Expect = 1e-14
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 337 VKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEK 396
++RPMNAFMVWA+ R LA+ NP +NA +S LG W +L+ +K+P+ +EA++++ +
Sbjct: 85 IRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQ 144
Query: 397 HREEFPGWVYQPRPGKRKR 415
H + P + Y+PR K+ R
Sbjct: 145 HLRDHPNYKYRPRRKKQAR 163
>gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens]
Length = 602
Score = 71.2 bits (173), Expect = 2e-12
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 235 LVHGSAEVILAPTSGAFG-PHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTP 293
LV + + T+G F P+ L + ++ PP PP + T +P
Sbjct: 260 LVPQQGQPVYPITTGGFRHPYPTALTVNASMSRFPPHM------VPPHHTLHTTGIPHPA 313
Query: 294 VPTKMQSLLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRP 353
+ T P+VK E+ + L S + + H+K+P+NAFM++ + R
Sbjct: 314 IVT-------PTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHIKKPLNAFMLYMKEMRA 366
Query: 354 ALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKR 413
+ +A I+ LG W+ LS E++ YY+ A+K ++ H + +PGW + GK+
Sbjct: 367 KVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKK 426
Query: 414 KR 415
K+
Sbjct: 427 KK 428
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,064,474
Number of Sequences: 37866
Number of extensions: 1395820
Number of successful extensions: 11695
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 447
Number of HSP's that attempted gapping in prelim test: 7894
Number of HSP's gapped (non-prelim): 3003
length of query: 501
length of database: 18,247,518
effective HSP length: 106
effective length of query: 395
effective length of database: 14,233,722
effective search space: 5622320190
effective search space used: 5622320190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.