Guide to the Human Genome
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Name: ABO Sequence: fasta or formatted (354aa) NCBI GI: 58331216
Description:

ABO blood group (alpha 1-3-N-acetylgalactosaminyltransferase, alpha 1-3-galactosyltransferase)

Referenced in:

Protein Glycosylation
Polymorphism
Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         20           2
 C cysteine            1.7          6           1
 D aspartate           4.2         15           1
 E glutamate           5.6         20           1
 F phenylalanine       5.6         20           2
 G glycine             5.9         21           2
 H histidine           3.4         12           1
 I isoleucine          3.1         11           1
 K lysine              4.2         15           2
 L leucine            11.6         41           2
 M methionine          3.7         13           2
 N asparagine          2.0          7           1
 P proline             6.2         22           1
 Q glutamine           4.5         16           2
 R arginine            7.9         28           2
 S serine              4.0         14           2
 T threonine           4.8         17           2
 V valine             10.2         36           2
 W tryptophan          1.7          6           1
 Y tyrosine            4.0         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ABO blood group (alpha 1-3-N-acetylgalactosaminyltra... 
GBGT1                 0.380   globoside alpha-1,3-N-acetylgalactosaminyltransferas...
A3GALT2               0.290   alpha 1,3-galactosyltransferase 2 
GLT6D1                0.186   glycosyltransferase 6 domain containing 1 
LOC100288473          0.006   PREDICTED: hypothetical protein XP_002343336 
CTSC                  0.004   cathepsin C isoform a preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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