Guide to the Human Genome
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Name: C20orf30 Sequence: fasta or formatted (120aa) NCBI GI: 58331124
Description:

hypothetical protein LOC29058 isoform 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {120aa} hypothetical protein LOC29058 isoform 2
alt prot {183aa} hypothetical protein LOC29058 isoform 1
alt mRNA {120aa} hypothetical protein LOC29058 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5          9           1
 C cysteine            0.0          0           0
 D aspartate           7.5          9           2
 E glutamate           0.0          0           0
 F phenylalanine       5.0          6           1
 G glycine             9.2         11           2
 H histidine           0.8          1           1
 I isoleucine         11.7         14           3
 K lysine              6.7          8           2
 L leucine            11.7         14           3
 M methionine          1.7          2           2
 N asparagine          0.8          1           1
 P proline             6.7          8           2
 Q glutamine           0.8          1           1
 R arginine            4.2          5           1
 S serine              9.2         11           2
 T threonine           4.2          5           1
 V valine              4.2          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            8.3         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC29058 isoform 2 
C20orf30              1.000   hypothetical protein LOC29058 isoform 1 
C20orf30              1.000   hypothetical protein LOC29058 isoform 2 
C20orf30              1.000   hypothetical protein LOC29058 isoform 2 
TMEM134               0.088   transmembrane protein 134 isoform a 
TMEM134               0.074   transmembrane protein 134 isoform c 
TMEM134               0.056   transmembrane protein 134 isoform b 
ITGB6                 0.009   integrin, beta 6 
GREM1                 0.005   gremlin-1 precursor 
DPPA4                 0.005   developmental pluripotency associated 4 
CASD1                 0.005   CAS1 domain containing 1 
MS4A5                 0.005   membrane-spanning 4-domains, subfamily A, member 5 [...
MFSD11                0.005   major facilitator superfamily domain containing 11 [...
C4orf41               0.005   hypothetical protein LOC60684 isoform b 
C4orf41               0.005   hypothetical protein LOC60684 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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