Guide to the Human Genome
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Name: GRINA Sequence: fasta or formatted (371aa) NCBI GI: 57165373
Description:

glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1

Referenced in:

Glutamate

Other entries for this name:
alt mRNA [371aa] glutamate receptor, ionotropic, N-methyl D-aspartate-associated p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         19           2
 C cysteine            1.6          6           2
 D aspartate           3.0         11           2
 E glutamate           3.0         11           2
 F phenylalanine       6.5         24           2
 G glycine             8.4         31           2
 H histidine           1.1          4           1
 I isoleucine          5.4         20           2
 K lysine              1.9          7           1
 L leucine             8.1         30           3
 M methionine          2.2          8           1
 N asparagine          3.5         13           1
 P proline            13.2         49           3
 Q glutamine           6.7         25           1
 R arginine            2.4          9           2
 S serine              6.7         25           1
 T threonine           4.6         17           2
 V valine              7.8         29           2
 W tryptophan          0.8          3           1
 Y tyrosine            8.1         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate receptor, ionotropic, N-methyl D-aspartate... 
GRINA                 1.000   glutamate receptor, ionotropic, N-methyl D-aspartate...
TMBIM1                0.298   transmembrane BAX inhibitor motif containing 1 [Homo...
FAIM2                 0.290   Fas apoptotic inhibitory molecule 2 
TMBIM4                0.128   transmembrane BAX inhibitor motif containing 4 [Hom...
PRB3                  0.096   proline-rich protein BstNI subfamily 3 precursor [H...
PRB1                  0.092   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.090   proline-rich protein BstNI subfamily 2 
PRB1                  0.088   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB1                  0.073   proline-rich protein BstNI subfamily 1 isoform 3 pre...
CPSF6                 0.070   cleavage and polyadenylation specific factor 6, 68 ...
PRB4                  0.069   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRR13                 0.069   proline rich 13 isoform 1 
PRH1                  0.063   proline-rich protein HaeIII subfamily 1 
WBP11                 0.063   WW domain binding protein 11 
MAPK1IP1L             0.062   MAPK-interacting and spindle-stabilizing protein [Ho...
PRH2                  0.062   proline-rich protein HaeIII subfamily 2 
PRH2                  0.062   proline-rich protein HaeIII subfamily 2 
ANXA7                 0.058   annexin VII isoform 2 
HNRNPUL1              0.058   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.058   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
ANXA11                0.058   annexin A11 
ANXA11                0.058   annexin A11 
ANXA11                0.058   annexin A11 
ANXA7                 0.058   annexin VII isoform 1 
WASF2                 0.057   WAS protein family, member 2 
SF3B4                 0.055   splicing factor 3b, subunit 4 
WDR33                 0.053   WD repeat domain 33 isoform 1 
C16orf5               0.051   cell death inducing protein 
ESX1                  0.050   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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