Guide to the Human Genome
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Name: GTSF1L Sequence: fasta or formatted (123aa) NCBI GI: 57165364
Description:

gametocyte specific factor 1-like isoform 2

Referenced in:

Ovary, Uterus and Placenta
Testes and Sperm

Other entries for this name:
alt prot [148aa] gametocyte specific factor 1-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          8           1
 C cysteine            4.9          6           1
 D aspartate           4.1          5           2
 E glutamate          11.4         14           3
 F phenylalanine       3.3          4           2
 G glycine             0.8          1           1
 H histidine           4.1          5           2
 I isoleucine          3.3          4           1
 K lysine              8.9         11           2
 L leucine             4.1          5           1
 M methionine          1.6          2           1
 N asparagine          5.7          7           1
 P proline             9.8         12           2
 Q glutamine           5.7          7           2
 R arginine            5.7          7           2
 S serine              6.5          8           2
 T threonine           4.9          6           1
 V valine              6.5          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gametocyte specific factor 1-like isoform 2 
GTSF1L                0.945   gametocyte specific factor 1-like isoform 1 
GTSF1                 0.208   gametocyte specific factor 1 
SNRNP48               0.051   U11/U12 snRNP 48K 
HACL1                 0.025   2-hydroxyphytanoyl-CoA lyase 
SMC6                  0.021   SMC6 protein 
SMC6                  0.021   SMC6 protein 
ENOX2                 0.021   ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo...
ENOX2                 0.021   ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo...
ARHGAP21              0.013   Rho GTPase activating protein 21 
KIAA1409              0.013   hypothetical protein LOC57578 
FAM48A                0.013   family with sequence similarity 48, member A isoform ...
FAM48A                0.013   family with sequence similarity 48, member A isoform...
LOC100132015          0.013   PREDICTED: similar to testis expressed sequence 13A...
C6                    0.013   complement component 6 precursor 
C6                    0.013   complement component 6 precursor 
MAGEC1                0.013   melanoma antigen family C, 1 
KCNN3                 0.008   small conductance calcium-activated potassium chann...
ZNHIT3                0.008   thyroid hormone receptor interactor 3 
SLC4A1AP              0.008   solute carrier family 4 (anion exchanger), member 1...
LAMC2                 0.008   laminin, gamma 2 isoform b precursor 
LAMC2                 0.008   laminin, gamma 2 isoform a precursor 
ZNF385B               0.008   zinc finger protein 385B isoform 3 
ZNF385B               0.008   zinc finger protein 385B isoform 2 
ZNF385B               0.008   zinc finger protein 385B isoform 1 
MYCBP2                0.008   MYC binding protein 2 
SRPK1                 0.008   SFRS protein kinase 1 
SNCG                  0.008   synuclein, gamma (breast cancer-specific protein 1)...
CCDC76                0.008   coiled-coil domain containing 76 
NTN1                  0.004   netrin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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