Search of human proteins with 55749466

Search of human proteins with 55749466

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55749466 transcription elongation factor A (SII)-like 8
[Homo sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55749466 transcription elongation factor A (SII)-like 8 [Homo...   251   1e-67
gi|23503247 transcription elongation factor A (SII)-like 8 [Homo...   251   1e-67
gi|23397409 transcription elongation factor A (SII)-like 7 [Homo...    90   4e-19
gi|55743140 WW domain binding protein 5 [Homo sapiens]                 77   4e-15
gi|55743147 WW domain binding protein 5 [Homo sapiens]                 77   4e-15
gi|10047100 WW domain binding protein 5 [Homo sapiens]                 77   4e-15
gi|55743145 WW domain binding protein 5 [Homo sapiens]                 77   4e-15
gi|55749424 transcription elongation factor A (SII)-like 1 [Homo...    65   9e-12
gi|55749406 transcription elongation factor A (SII)-like 1 [Homo...    65   9e-12
gi|55749397 transcription elongation factor A (SII)-like 1 [Homo...    65   9e-12
gi|55749431 transcription elongation factor A (SII)-like 3 [Homo...    56   5e-09
gi|14249718 transcription elongation factor A (SII)-like 3 [Homo...    56   5e-09
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo...    54   3e-08
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom...    53   5e-08
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo...    48   1e-06
gi|228008288 brain expressed, X-linked 5 [Homo sapiens]                46   7e-06
gi|61175244 brain expressed, X-linked 5 [Homo sapiens]                 46   7e-06
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo...    43   6e-05
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo...    43   6e-05
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo...    43   6e-05
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo...    43   6e-05
gi|46094060 nerve growth factor receptor (TNFRSF16) associated p...    36   0.007
gi|7657044 nerve growth factor receptor (TNFRSF16) associated pr...    36   0.007
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     36   0.007
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]           35   0.010
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    35   0.010
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    35   0.010
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    35   0.010
gi|158534059 formin binding protein 4 [Homo sapiens]                   35   0.013
gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]           35   0.017

>gi|55749466 transcription elongation factor A (SII)-like 8 [Homo
           sapiens]
          Length = 117

 Score =  251 bits (640), Expect = 1e-67
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
           MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG
Sbjct: 1   MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60

Query: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP 117
           FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP
Sbjct: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP 117


>gi|23503247 transcription elongation factor A (SII)-like 8 [Homo
           sapiens]
          Length = 117

 Score =  251 bits (640), Expect = 1e-67
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
           MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG
Sbjct: 1   MQKSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60

Query: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP 117
           FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP
Sbjct: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP 117


>gi|23397409 transcription elongation factor A (SII)-like 7 [Homo
           sapiens]
          Length = 100

 Score = 89.7 bits (221), Expect = 4e-19
 Identities = 52/114 (45%), Positives = 64/114 (56%), Gaps = 15/114 (13%)

Query: 1   MQKSCEENEGKPQ-NMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQ 59
           MQK C+ENEGKP+ ++PK EE RP  +  +              Q+ EGN R    Q  +
Sbjct: 1   MQKPCKENEGKPKCSVPKREEKRPYGEFER--------------QQTEGNFRQRLLQSLE 46

Query: 60  GFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPV 113
            FKED   RH   EEM R  DE+ER  EEIR +R KF  +H   RHSR RPYP+
Sbjct: 47  EFKEDIDYRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYPI 100


>gi|55743140 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)

Query: 3   KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
           KSC++ EGKP+N   PK EE+   E+ P+E E   +  EE    +A+G  R    Q  Q 
Sbjct: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55

Query: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
           FKED   RHL  E+M R VDE++    EIRRVRNK ++M WK   +R+ PYP
Sbjct: 56  FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101


>gi|55743147 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)

Query: 3   KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
           KSC++ EGKP+N   PK EE+   E+ P+E E   +  EE    +A+G  R    Q  Q 
Sbjct: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55

Query: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
           FKED   RHL  E+M R VDE++    EIRRVRNK ++M WK   +R+ PYP
Sbjct: 56  FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101


>gi|10047100 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)

Query: 3   KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
           KSC++ EGKP+N   PK EE+   E+ P+E E   +  EE    +A+G  R    Q  Q 
Sbjct: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55

Query: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
           FKED   RHL  E+M R VDE++    EIRRVRNK ++M WK   +R+ PYP
Sbjct: 56  FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101


>gi|55743145 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)

Query: 3   KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
           KSC++ EGKP+N   PK EE+   E+ P+E E   +  EE    +A+G  R    Q  Q 
Sbjct: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55

Query: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
           FKED   RHL  E+M R VDE++    EIRRVRNK ++M WK   +R+ PYP
Sbjct: 56  FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101


>gi|55749424 transcription elongation factor A (SII)-like 1 [Homo
           sapiens]
          Length = 159

 Score = 65.5 bits (158), Expect = 9e-12
 Identities = 53/165 (32%), Positives = 71/165 (43%), Gaps = 58/165 (35%)

Query: 1   MQKSCEENEGKPQNMPKAEEDRP-LEDVPQEAEGNPQPSEEGVSQEA------------- 46
           M K  +ENE +PQ+ PK +E+RP +E  P++     Q SEE  S+E              
Sbjct: 1   MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE 60

Query: 47  -------------------EGNPRGGPNQPGQG-------------------FKEDTPVR 68
                              EG P       G G                   F+ D   R
Sbjct: 61  MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR 120

Query: 69  HLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPV 113
           +L  EEMI+  DELE    E++RVRNK ++MHWK +  RSRPYP+
Sbjct: 121 NLSNEEMIQAADELE----EMKRVRNKLMIMHWKAK--RSRPYPI 159


>gi|55749406 transcription elongation factor A (SII)-like 1 [Homo
           sapiens]
          Length = 159

 Score = 65.5 bits (158), Expect = 9e-12
 Identities = 53/165 (32%), Positives = 71/165 (43%), Gaps = 58/165 (35%)

Query: 1   MQKSCEENEGKPQNMPKAEEDRP-LEDVPQEAEGNPQPSEEGVSQEA------------- 46
           M K  +ENE +PQ+ PK +E+RP +E  P++     Q SEE  S+E              
Sbjct: 1   MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE 60

Query: 47  -------------------EGNPRGGPNQPGQG-------------------FKEDTPVR 68
                              EG P       G G                   F+ D   R
Sbjct: 61  MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR 120

Query: 69  HLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPV 113
           +L  EEMI+  DELE    E++RVRNK ++MHWK +  RSRPYP+
Sbjct: 121 NLSNEEMIQAADELE----EMKRVRNKLMIMHWKAK--RSRPYPI 159


>gi|55749397 transcription elongation factor A (SII)-like 1 [Homo
           sapiens]
          Length = 159

 Score = 65.5 bits (158), Expect = 9e-12
 Identities = 53/165 (32%), Positives = 71/165 (43%), Gaps = 58/165 (35%)

Query: 1   MQKSCEENEGKPQNMPKAEEDRP-LEDVPQEAEGNPQPSEEGVSQEA------------- 46
           M K  +ENE +PQ+ PK +E+RP +E  P++     Q SEE  S+E              
Sbjct: 1   MDKPRKENEEEPQSAPKTDEERPPVEHSPEKQSPEEQSSEEQSSEEEFFPEELLPELLPE 60

Query: 47  -------------------EGNPRGGPNQPGQG-------------------FKEDTPVR 68
                              EG P       G G                   F+ D   R
Sbjct: 61  MLLSEERPPQEGLSRKDLFEGRPPMEQPPCGVGKHKLEEGSFKERLARSRPQFRGDIHGR 120

Query: 69  HLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPV 113
           +L  EEMI+  DELE    E++RVRNK ++MHWK +  RSRPYP+
Sbjct: 121 NLSNEEMIQAADELE----EMKRVRNKLMIMHWKAK--RSRPYPI 159


>gi|55749431 transcription elongation factor A (SII)-like 3 [Homo
           sapiens]
          Length = 200

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E EGKPQ   K       E  P+ AE   +P+E+ V ++A+     G +   +  +ED  
Sbjct: 73  EGEGKPQGEGKPASQAKPESQPRAAE--KRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQ 130

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
            RHL  EEM+R   ++ R +EE+R+ + K    HW QR
Sbjct: 131 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 167


>gi|14249718 transcription elongation factor A (SII)-like 3 [Homo
           sapiens]
          Length = 200

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E EGKPQ   K       E  P+ AE   +P+E+ V ++A+     G +   +  +ED  
Sbjct: 73  EGEGKPQGEGKPASQAKPESQPRAAE--KRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQ 130

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
            RHL  EEM+R   ++ R +EE+R+ + K    HW QR
Sbjct: 131 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 167


>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
           sapiens]
          Length = 206

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E E KPQ+  K       E  P+ AE   +P+E+ V ++A+     G +   +  +ED  
Sbjct: 79  EGEDKPQSEGKPASQAKPESQPRAAE--KRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQ 136

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
            RHL  EEM+R   ++ R +EE+R+ + K    HW QR
Sbjct: 137 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 173


>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
           sapiens]
          Length = 183

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E EGKPQ   K       E  P+ AE   +P+ + V ++A+     G +   +  +ED  
Sbjct: 73  EGEGKPQGEGKPASQAKPEGQPRAAE--KRPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQ 130

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
            RHL  EEM+R   ++ R +EE+R+ + K    HW QR
Sbjct: 131 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 167


>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
           sapiens]
          Length = 227

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)

Query: 7   ENEGKPQNMPKAE-EDRPLEDVPQEAEGNPQ---------PSEEGVSQEAEGNPRGGPNQ 56
           + EGKP+   +AE E  P  +   E+EG P+         P+E+ + ++A+     G  Q
Sbjct: 89  KTEGKPERGGRAEGEGEPDSEREPESEGEPESETRAAGKRPAEDDIPRKAKRKTNKGLAQ 148

Query: 57  PGQGFKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
             + +KE     +   E+MIR  D + R+ ++ R+ + K     W QR+ +   YP
Sbjct: 149 YLKQYKEAIHDMNFSNEDMIREFDNMARVEDKRRKSKQKLGAFLWMQRNLQDPFYP 204



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 1  MQKSCEENEGKPQNMPKAE-EDRP-----------LEDVPQEAEGNPQPSEEGVSQ--EA 46
          M+K   ENEG P N  K + E++P           LED   E EGN + + + V +  + 
Sbjct: 1  MEKLFNENEGMPSNQGKIDNEEQPPHEGKPEVACILEDKKLENEGNTENTGKRVEEPLKD 60

Query: 47 EGNPRGGPNQPGQGFKE 63
          +  P       G+G  E
Sbjct: 61 KEKPESAGKAKGEGKSE 77


>gi|228008288 brain expressed, X-linked 5 [Homo sapiens]
          Length = 111

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 13 QNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHLDP 72
          +N+PK  E++ +E  P + E        G  QE  GN +G    P  GF ED P R +D 
Sbjct: 2  ENVPK--ENKVVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDN 57

Query: 73 EEMIRG-VDELERLREEIRRVRNK 95
           +MI G  D++ER  EE+R +R K
Sbjct: 58 IDMIDGDGDDMERFMEEMRELRRK 81


>gi|61175244 brain expressed, X-linked 5 [Homo sapiens]
          Length = 111

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 13 QNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHLDP 72
          +N+PK  E++ +E  P + E        G  QE  GN +G    P  GF ED P R +D 
Sbjct: 2  ENVPK--ENKVVEKAPVQNEAPALGG--GEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDN 57

Query: 73 EEMIRG-VDELERLREEIRRVRNK 95
           +MI G  D++ER  EE+R +R K
Sbjct: 58 IDMIDGDGDDMERFMEEMRELRRK 81


>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E EGKP+   K E +   E   +      +P+E+ V ++A+     G     + +KE   
Sbjct: 89  EREGKPEIEGKPESEG--EPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIH 146

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
             +   E+MIR  D + ++++E R+ + K     W QR+ +   YP
Sbjct: 147 DMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYP 192


>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E EGKP+   K E +   E   +      +P+E+ V ++A+     G     + +KE   
Sbjct: 89  EREGKPEIEGKPESEG--EPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIH 146

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
             +   E+MIR  D + ++++E R+ + K     W QR+ +   YP
Sbjct: 147 DMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYP 192


>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E EGKP+   K E +   E   +      +P+E+ V ++A+     G     + +KE   
Sbjct: 89  EREGKPEIEGKPESEG--EPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIH 146

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
             +   E+MIR  D + ++++E R+ + K     W QR+ +   YP
Sbjct: 147 DMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYP 192


>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 7   ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           E EGKP+   K E +   E   +      +P+E+ V ++A+     G     + +KE   
Sbjct: 89  EREGKPEIEGKPESEG--EPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKEAIH 146

Query: 67  VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
             +   E+MIR  D + ++++E R+ + K     W QR+ +   YP
Sbjct: 147 DMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYP 192


>gi|46094060 nerve growth factor receptor (TNFRSF16) associated
          protein 1 isoform b [Homo sapiens]
          Length = 111

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 6  EENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDT 65
          +ENE   Q M   EEDRPL                G   +  GN RG   +    F+   
Sbjct: 6  QENEEMEQPMQNGEEDRPLGG--------------GEGHQPAGNRRGQARRLAPNFRWAI 51

Query: 66 PVRHLDPEEMIRGVDELERLREEIRRVRNK 95
          P R ++ + M    D++E   EE+R +R K
Sbjct: 52 PNRQIN-DGMGGDGDDMEIFMEEMREIRRK 80


>gi|7657044 nerve growth factor receptor (TNFRSF16) associated
          protein 1 isoform b [Homo sapiens]
          Length = 111

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 6  EENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDT 65
          +ENE   Q M   EEDRPL                G   +  GN RG   +    F+   
Sbjct: 6  QENEEMEQPMQNGEEDRPLGG--------------GEGHQPAGNRRGQARRLAPNFRWAI 51

Query: 66 PVRHLDPEEMIRGVDELERLREEIRRVRNK 95
          P R ++ + M    D++E   EE+R +R K
Sbjct: 52 PNRQIN-DGMGGDGDDMEIFMEEMREIRRK 80


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 3   KSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPR----GGPNQPG 58
           +S     GKPQ  P+ E + P +  P  A GNPQ  +   + + +G PR    G P++P 
Sbjct: 357 RSARSPPGKPQGPPQQEGNNP-QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 415

Query: 59  Q 59
           Q
Sbjct: 416 Q 416



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 10  GKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAE---GNPRGGPNQPG 58
           GKPQ  P    ++P    P      P P  +  SQ A    G P+G P Q G
Sbjct: 199 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGG 250



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 10  GKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAE---GNPRGGPNQPGQGFKEDTP 66
           GKPQ  P    ++P    P      P P     S+ A    G P+G P Q G   +   P
Sbjct: 323 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPP 382

Query: 67  VRHLDPEE 74
               +P++
Sbjct: 383 PAGGNPQQ 390



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 10  GKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAE---GNPRGGPNQPG 58
           GKPQ  P    ++P    P      P P  +  S+ +    G P+G P Q G
Sbjct: 137 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGG 188



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 10  GKPQNMPKAEEDRPLEDVPQEAEGNPQP---SEEGVSQEAEGNPRGGPNQPG 58
           GKPQ  P    ++P    P      P P   S+   S+   G P+G P Q G
Sbjct: 261 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGG 312


>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
          Length = 306

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 11  KPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHL 70
           +P+  P+ EE+ P    P  A G    S    SQE E  P      PG G  ED  +  +
Sbjct: 63  EPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAI 122

Query: 71  DP--EEMIRGVDELERLREEIRRVRN 94
                EM    ++L+ L+ E+ +  N
Sbjct: 123 KARVREMEEEAEKLKELQNEVEKQMN 148


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 3   KSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPR----GGPNQPG 58
           +S     GKPQ  P+ E + P +  P  A GNPQ  +   + + +G PR    G P++P 
Sbjct: 272 QSARSPPGKPQGPPQQEGNNP-QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 330

Query: 59  Q 59
           Q
Sbjct: 331 Q 331



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 10  GKPQNMPKAEEDRPLEDVPQEAEGNPQPS--EEGVSQEAEGNPRGGPNQPG 58
           GKPQ  P     +P    P      P P   +   SQ   G P+G P Q G
Sbjct: 177 GKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGG 227


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 3   KSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPR----GGPNQPG 58
           +S     GKPQ  P+ E + P +  P  A GNPQ  +   + + +G PR    G P++P 
Sbjct: 119 QSARSPPGKPQGPPQQEGNNP-QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 177

Query: 59  Q 59
           Q
Sbjct: 178 Q 178


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 3   KSCEENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPR----GGPNQPG 58
           +S     GKPQ  P+ E + P +  P  A GNPQ  +   + + +G PR    G P++P 
Sbjct: 139 QSARSPPGKPQGPPQQEGNNP-QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 197

Query: 59  Q 59
           Q
Sbjct: 198 Q 198


>gi|158534059 formin binding protein 4 [Homo sapiens]
          Length = 1017

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 14  NMPKAEEDRPLE---------DVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKED 64
           N+P  +   PLE         + P      P P+E+G  QE E    G    P  G +ED
Sbjct: 699 NVPVLQPPLPLEMPPPPPPPPESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEED 758

Query: 65  TPVR 68
           TP++
Sbjct: 759 TPLK 762


>gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]
          Length = 1015

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 25  EDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELE 83
           ED P++A     P+E G+ QE +G     P + G   +ED P     P E   GVD+ E
Sbjct: 318 EDGPEDAS----PTEHGIDQEEDGPEDASPTEHGVDQEEDGP-EDASPTEHEHGVDQEE 371



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 6   EENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDT 65
           +E +G     P        ED P++A     P+E GV Q+ +G     P + G   +ED 
Sbjct: 248 QEEDGPEDASPTEHGVDQQEDGPEDAS----PTEHGVDQQEDGPEDARPTEHGVDQEEDG 303

Query: 66  PVRHLDPEEMIRGVDELE 83
           P    D      GVD+ E
Sbjct: 304 PE---DASLTEHGVDQQE 318



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 25  EDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELER 84
           ED P++A     P+E  V QE +G     P + G   +ED P    D      GVD+ E 
Sbjct: 233 EDGPEDAS----PTEHDVGQEEDGPEDASPTEHGVDQQEDGPE---DASPTEHGVDQQED 285

Query: 85  LREEIR 90
             E+ R
Sbjct: 286 GPEDAR 291



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 10  GKPQNMPKAEEDRPLEDVPQEAEGNPQPS---EEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           G  Q     E+ RP E    + E  P+ +   E GV Q+ +G     P + G   +ED P
Sbjct: 279 GVDQQEDGPEDARPTEHGVDQEEDGPEDASLTEHGVDQQEDGPEDASPTEHGIDQEEDGP 338

Query: 67  VRHLDPEEMIRGVDELE 83
               D      GVD+ E
Sbjct: 339 E---DASPTEHGVDQEE 352



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 37  PSEEGVSQEAEGNPRGGPNQPGQGFKEDTPVRHLDPEEMIRGVDELE 83
           P+E GV QE +G     P +   G +ED P    D      GVD+ E
Sbjct: 224 PTEHGVGQEEDGPEDASPTEHDVGQEEDGPE---DASPTEHGVDQQE 267



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 10  GKPQNMPKAEEDRPLEDVPQEAEGNPQ---PSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
           G  Q     E+  P E    + E  P+   P+E GV QE +G       + G   +ED P
Sbjct: 262 GVDQQEDGPEDASPTEHGVDQQEDGPEDARPTEHGVDQEEDGPEDASLTEHGVDQQEDGP 321

Query: 67  VRHLDPEEMIRGVDELE 83
               D      G+D+ E
Sbjct: 322 E---DASPTEHGIDQEE 335


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,321,517
Number of Sequences: 37866
Number of extensions: 360890
Number of successful extensions: 2210
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 1821
Number of HSP's gapped (non-prelim): 490
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.