Guide to the Human Genome
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Name: RBCK1 Sequence: fasta or formatted (468aa) NCBI GI: 5454168
Description:

RanBP-type and C3HC4-type zinc finger containing 1 isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [510aa] RanBP-type and C3HC4-type zinc finger containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         26           2
 C cysteine            6.6         31           2
 D aspartate           5.1         24           2
 E glutamate           8.1         38           3
 F phenylalanine       2.6         12           2
 G glycine             6.8         32           2
 H histidine           2.4         11           1
 I isoleucine          2.8         13           1
 K lysine              3.2         15           2
 L leucine             8.5         40           2
 M methionine          2.1         10           1
 N asparagine          3.2         15           1
 P proline             7.9         37           3
 Q glutamine           8.3         39           4
 R arginine            7.1         33           1
 S serine              3.8         18           1
 T threonine           5.1         24           2
 V valine              6.4         30           2
 W tryptophan          1.7          8           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RanBP-type and C3HC4-type zinc finger containing 1 is... 
RBCK1                 0.972   RanBP-type and C3HC4-type zinc finger containing 1 ...
SHARPIN               0.094   shank-interacting protein-like 1 
RNF216                0.046   ring finger protein 216 isoform b 
RNF216                0.046   ring finger protein 216 isoform a 
RNF19B                0.045   ring finger protein 19B isoform a 
RNF19B                0.045   ring finger protein 19B isoform b 
RNF14                 0.044   ring finger protein 14 isoform 1 
RNF14                 0.044   ring finger protein 14 isoform 1 
RNF14                 0.044   ring finger protein 14 isoform 1 
RNF14                 0.044   ring finger protein 14 isoform 2 
RNF14                 0.044   ring finger protein 14 isoform 1 
RNF217                0.043   ring finger protein 217 
RNF144B               0.042   IBR domain containing 2 
RNF144A               0.042   ring finger protein 144 
RNF31                 0.032   ring finger protein 31 
CUL9                  0.031   p53-associated parkin-like cytoplasmic protein [Homo...
ANKIB1                0.030   ankyrin repeat and IBR domain containing 1 
ARIH2                 0.030   ariadne homolog 2 
RNF19A                0.030   ring finger protein 19 
RNF19A                0.030   ring finger protein 19 
ARIH1                 0.028   ariadne ubiquitin-conjugating enzyme E2 binding pro...
PARK2                 0.023   parkin isoform 3 
PARK2                 0.023   parkin isoform 2 
PARK2                 0.023   parkin isoform 1 
LONRF2                0.017   LON peptidase N-terminal domain and ring finger 2 [...
TULP4                 0.017   tubby like protein 4 isoform 1 
TRERF1                0.016   transcriptional regulating factor 1 
PCGF6                 0.016   polycomb group ring finger 6 isoform a 
PCGF6                 0.016   polycomb group ring finger 6 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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