Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SEMA3C Sequence: fasta or formatted (751aa) NCBI GI: 5454048
Description:

semaphorin 3C

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         37           2
 C cysteine            3.1         23           2
 D aspartate           5.7         43           2
 E glutamate           4.5         34           2
 F phenylalanine       4.8         36           3
 G glycine             5.9         44           2
 H histidine           3.2         24           2
 I isoleucine          5.7         43           2
 K lysine              6.1         46           2
 L leucine             6.8         51           2
 M methionine          2.3         17           1
 N asparagine          5.3         40           2
 P proline             4.5         34           1
 Q glutamine           4.3         32           2
 R arginine            6.5         49           2
 S serine              8.0         60           3
 T threonine           6.7         50           2
 V valine              7.2         54           3
 W tryptophan          1.1          8           1
 Y tyrosine            3.5         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   semaphorin 3C 
SEMA3F                0.523   semaphorin 3F 
SEMA3A                0.449   semaphorin 3A precursor 
SEMA3D                0.428   semaphorin 3D 
SEMA3E                0.409   semaphorin 3E 
SEMA3B                0.404   semaphorin 3B isoform 1 precursor 
SEMA3B                0.400   semaphorin 3B isoform 2 precursor 
SEMA3G                0.367   semaphorin sem2 
SEMA4D                0.212   semaphorin 4D isoform 1 
SEMA4D                0.201   semaphorin 4D isoform 2 
SEMA4B                0.188   semaphorin 4B precursor 
SEMA4B                0.188   semaphorin 4B precursor 
SEMA4C                0.181   semaphorin 4C 
SEMA6D                0.174   semaphorin 6D isoform 2 precursor 
SEMA6D                0.173   semaphorin 6D isoform 5 precursor 
SEMA6D                0.173   semaphorin 6D isoform 4 precursor 
SEMA6D                0.173   semaphorin 6D isoform 3 precursor 
SEMA6D                0.170   semaphorin 6D isoform 1 precursor 
SEMA4A                0.169   semaphorin B 
SEMA4G                0.162   semaphorin 4G 
SEMA6A                0.162   sema domain, transmembrane domain (TM), and cytoplas...
SEMA4F                0.150   semaphorin W 
SEMA6D                0.149   semaphorin 6D isoform 6 precursor 
SEMA5B                0.149   semaphorin 5B isoform 1 
SEMA5A                0.147   semaphorin 5A 
SEMA6B                0.141   semaphorin 6B precursor 
SEMA6C                0.132   semaphorin Y 
SEMA7A                0.123   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.123   semaphorin 7A isoform 2 preproprotein 
SEMA7A                0.120   semaphorin 7A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press