Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5453810
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453810 netrin 3 [Homo sapiens]
(580 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453810 netrin 3 [Homo sapiens] 1241 0.0
gi|148613884 netrin 1 [Homo sapiens] 674 0.0
gi|24308065 netrin 5 [Homo sapiens] 377 e-104
gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 327 2e-89
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 306 4e-83
gi|93204871 netrin 4 [Homo sapiens] 228 2e-59
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 227 2e-59
gi|143770880 laminin, beta 4 [Homo sapiens] 210 3e-54
gi|164414431 netrin G1 isoform 1 [Homo sapiens] 199 8e-51
gi|167614504 laminin, beta 1 precursor [Homo sapiens] 198 1e-50
gi|62868217 laminin, beta 3 precursor [Homo sapiens] 196 5e-50
gi|62868215 laminin, beta 3 precursor [Homo sapiens] 196 5e-50
gi|189083719 laminin, beta 3 precursor [Homo sapiens] 196 5e-50
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 195 8e-50
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 195 8e-50
gi|190014607 netrin G2 [Homo sapiens] 194 1e-49
gi|21264602 laminin alpha 5 [Homo sapiens] 193 4e-49
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 190 3e-48
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 167 2e-41
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 167 2e-41
gi|219842266 usherin isoform B [Homo sapiens] 163 5e-40
gi|219842259 usherin isoform A [Homo sapiens] 163 5e-40
gi|54312078 netrin G1 isoform 3 [Homo sapiens] 124 2e-28
gi|164414437 netrin G1 isoform 2 [Homo sapiens] 123 5e-28
gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens] 105 1e-22
gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens] 105 1e-22
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 96 1e-19
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 96 1e-19
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 91 4e-18
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 86 7e-17
>gi|5453810 netrin 3 [Homo sapiens]
Length = 580
Score = 1241 bits (3212), Expect = 0.0
Identities = 580/580 (100%), Positives = 580/580 (100%)
Query: 1 MPGWPWGLLLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCG 60
MPGWPWGLLLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCG
Sbjct: 1 MPGWPWGLLLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCG 60
Query: 61 RPATRACDASDPRRAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFV 120
RPATRACDASDPRRAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFV
Sbjct: 61 RPATRACDASDPRRAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFV 120
Query: 121 SLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPA 180
SLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPA
Sbjct: 121 SLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPA 180
Query: 181 PLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVV 240
PLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVV
Sbjct: 181 PLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVV 240
Query: 241 PYSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRA 300
PYSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRA
Sbjct: 241 PYSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRA 300
Query: 301 TARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRD 360
TARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRD
Sbjct: 301 TARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRD 360
Query: 361 PGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAP 420
PGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAP
Sbjct: 361 PGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAP 420
Query: 421 CVKTPIPGPTEDSSPVQPQDCDSHCKPARGSYRISLKKFCKKDYAVQVAVGARGEARGAW 480
CVKTPIPGPTEDSSPVQPQDCDSHCKPARGSYRISLKKFCKKDYAVQVAVGARGEARGAW
Sbjct: 421 CVKTPIPGPTEDSSPVQPQDCDSHCKPARGSYRISLKKFCKKDYAVQVAVGARGEARGAW 480
Query: 481 TRFPVAVLAVFRSGEERARRGSSALWVPAGDAACGCPRLLPGRRYLLLGGGPGAAAGGAG 540
TRFPVAVLAVFRSGEERARRGSSALWVPAGDAACGCPRLLPGRRYLLLGGGPGAAAGGAG
Sbjct: 481 TRFPVAVLAVFRSGEERARRGSSALWVPAGDAACGCPRLLPGRRYLLLGGGPGAAAGGAG 540
Query: 541 GRGPGLIAARGSLVLPWRDAWTRRLRRLQRRERRGRCSAA 580
GRGPGLIAARGSLVLPWRDAWTRRLRRLQRRERRGRCSAA
Sbjct: 541 GRGPGLIAARGSLVLPWRDAWTRRLRRLQRRERRGRCSAA 580
>gi|148613884 netrin 1 [Homo sapiens]
Length = 604
Score = 674 bits (1740), Expect = 0.0
Identities = 314/580 (54%), Positives = 406/580 (70%), Gaps = 29/580 (5%)
Query: 22 GPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRPATR---------------- 65
G A DPC DE G PR C+P VNAA G++V SSTCGRP R
Sbjct: 33 GQAAQPDPCSDENGHPRRCIPDFVNAAFGKDVRVSSTCGRPPARYCVVSERGEERLRSCH 92
Query: 66 ACDASDPRRAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFVSLRFC 125
C+ASDP++AH PA LT + CW+SE+ + P NVTLT+ LGK FE+ +VSL+FC
Sbjct: 93 LCNASDPKKAHPPAFLTDLNNPHNLTCWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFC 152
Query: 126 SAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPAPL-AQ 184
S P S+A+ KS D+GR+W P F+S+ C Y R P A EA+C + +
Sbjct: 153 SPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNR-PHRAPITKQNEQEAVCTDSHTDMR 211
Query: 185 PDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVP--- 241
P GL+AFS D P D D+SPVLQDWVTATD+RV +R T GD + ++ +
Sbjct: 212 PLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENEDDSELARDS 271
Query: 242 YSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRAT 301
Y YA +DLQVGGRCKCNGHA+RC+ D L+CDCRH T GP+C RCKPF+ DRPWQRAT
Sbjct: 272 YFYAVSDLQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKPFHYDRPWQRAT 331
Query: 302 ARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDP 361
ARE++ C+AC+CN HARRCRFNMELY+LSGR+SGGVCLNCRHNTAGRHCHYC+EG+YRD
Sbjct: 332 AREANECVACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGYYRDM 391
Query: 362 GRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPC 421
G+ ++ R+AC+ACDCHPVGAAGKTCNQTTGQCPCKDGVTG+TCNRCA G+QQSRSP+APC
Sbjct: 392 GKPITHRKACKACDCHPVGAAGKTCNQTTGQCPCKDGVTGITCNRCAKGYQQSRSPIAPC 451
Query: 422 VKTPIPGPTEDSSPV-QPQDCDSHCKPARGSYRISLKKFCKKDYAVQVAVGARGEARGAW 480
+K P+ PT +S V +P+DCDS+CK ++G +I++KK+CKKDYAVQ+ + + + G W
Sbjct: 452 IKIPVAPPTTAASSVEEPEDCDSYCKASKGKLKINMKKYCKKDYAVQIHI-LKADKAGDW 510
Query: 481 TRFPVAVLAVFRSGEERARRGSSALWVPAGDAACGCPRLLPGRRYLLLGGGPGAAAGGAG 540
+F V +++V++ G R RRG +LW+ + D AC CP++ P ++YLLLG +
Sbjct: 511 WKFTVNIISVYKQGTSRIRRGDQSLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQS-- 568
Query: 541 GRGPGLIAARGSLVLPWRDAWTRRLRRLQRRERRGRCSAA 580
G++A + SLV+ WRD W RRLR+ Q+RE++G+C A
Sbjct: 569 ----GIVADKSSLVIQWRDTWARRLRKFQQREKKGKCKKA 604
>gi|24308065 netrin 5 [Homo sapiens]
Length = 489
Score = 377 bits (968), Expect = e-104
Identities = 229/566 (40%), Positives = 283/566 (50%), Gaps = 99/566 (17%)
Query: 16 FAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRPATRACDASDPRRA 75
FA L A ADPC+D G P+ C+P + A A AS P+
Sbjct: 5 FALLLLLGQATADPCYDPQGRPQFCLPPVTQLA-----------------AVAASCPQ-- 45
Query: 76 HSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVALL 135
A SPG R N +LT+ LG F L VSLRFC+ P ++ L
Sbjct: 46 ---ACALSPGNHLGA---------RETCNGSLTLALGGPFLLTSVSLRFCTPGPPALILS 93
Query: 136 KSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPAPLAQPDGSGLLAFSM 195
+ G W L PA A GPE + F
Sbjct: 94 AAWASGGPWRLLWH-------------RPAWPGALGGPERVTF----------------- 123
Query: 196 QDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRC 255
S+P + V A+ +RV + AA L+ GRC
Sbjct: 124 ----------HSTPGPKATVAASHLRVEFGGQA--------------GLAAAGLR--GRC 157
Query: 256 KCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNG 315
+C+GHA+RC + C CRH T GP C C+P + D PW+ AT R H CL CSCN
Sbjct: 158 QCHGHAARCAARARPPR-CHCRHHTTGPGCESCRPSHRDWPWRPATPRHPHPCLPCSCNQ 216
Query: 316 HARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACD 375
HARRCRFN EL+RLSG RSGGVC CRH+TAGRHCHYC+ GF+RDP + + RRACRAC
Sbjct: 217 HARRCRFNSELFRLSGGRSGGVCERCRHHTAGRHCHYCQPGFWRDPSQPIFSRRACRACQ 276
Query: 376 CHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSP 435
CHP+GA G TCNQT+GQC CK GVTGLTCNRC PG+QQSRSP PC + P T ++P
Sbjct: 277 CHPIGATGGTCNQTSGQCTCKLGVTGLTCNRCGPGYQQSRSPRMPCQRIPEATTTLATTP 336
Query: 436 ----VQPQDCDSHCKPARGSYRISLKKFCKKDYAVQVAVGARGEARGAWTRFPVAVLAVF 491
PQ C ++C + +SL+++C++D+ ++ V A A AW R V VLAV+
Sbjct: 337 GAYSSDPQ-CQNYCNMSDTRVHMSLRRYCQQDHVLRAQVLASEAAGPAWQRLAVRVLAVY 395
Query: 492 RSGEERARRGSSALWVPAGDAACGCPRLLPGRRYLLLGGGPGAAAGGAGGRGPGLIAARG 551
+ + RRG WVP D CGC RL PG YLLLG G LI R
Sbjct: 396 KQRAQPVRRGDQDAWVPRADLTCGCLRLQPGTDYLLLGSAVG------DPDPTRLILDRH 449
Query: 552 SLVLPWRDAWTRRLRRLQRRERRGRC 577
L LPWR W R L+RLQ+ ER G C
Sbjct: 450 GLALPWRPRWARPLKRLQQEERAGGC 475
>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
Length = 1609
Score = 327 bits (837), Expect = 2e-89
Identities = 176/444 (39%), Positives = 238/444 (53%), Gaps = 34/444 (7%)
Query: 4 WPWGLLLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRP- 62
WP +L A AA + A D C DEGG P+ C+P VNAA V+A++TCG P
Sbjct: 18 WPVLAVLAA----AAAAGCAQAAMDECTDEGGRPQRCMPEFVNAAFNVTVVATNTCGTPP 73
Query: 63 --------------ATRACDASDPRRAHSPALLTSPGGTASPLCWRSESL---PRAPLNV 105
+ CDA P H A LT A W+S+++ + P ++
Sbjct: 74 EEYCVQTGVTGVTKSCHLCDAGQPHLQHGAAFLTDYNNQADTTWWQSQTMLAGVQYPSSI 133
Query: 106 TLTVPLGKAFELVFVSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPA 165
LT+ LGKAF++ +V L+F ++ P S A+ K W P ++S C+ Y +
Sbjct: 134 NLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGF 193
Query: 166 NGPAGPGPEALCFPA-PLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVL 224
G +ALC P G +AFS + P + D+SPVLQ+WVTATD+RV L
Sbjct: 194 IRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTL 253
Query: 225 TRPSTAGDP--RDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEG 282
R +T GD D + + Y YA +D VGGRCKCNGHAS C+ + L+C+C+H T G
Sbjct: 254 NRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECMKNEFDKLVCNCKHNTYG 313
Query: 283 PDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCR 342
DC +C PF+ DRPW+RATA + CL C CNG ++ C F+ ELYR +G GG C NC+
Sbjct: 314 VDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH--GGHCTNCQ 371
Query: 343 HNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGL 402
NT G HC CRE F+R L + AC +C C PVG+ C+ + G+C CK GV G
Sbjct: 372 DNTDGAHCERCRENFFR-----LGNNEACSSCHCSPVGSLSTQCD-SYGRCSCKPGVMGD 425
Query: 403 TCNRCAPGFQQ-SRSPVAPCVKTP 425
C+RC PGF + + PC P
Sbjct: 426 KCDRCQPGFHSLTEAGCRPCSCDP 449
Score = 92.8 bits (229), Expect = 8e-19
Identities = 67/230 (29%), Positives = 91/230 (39%), Gaps = 41/230 (17%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN 314
C CNGH+ C +T +C+CR T GP C +C Y + +TA S C C C
Sbjct: 724 CACNGHSETCDPETG---VCNCRDNTAGPHCEKCSDGY----YGDSTAGTSSDCQPCPCP 776
Query: 315 GHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
G + + + VC NC T G+ C C +G++ DP R CR C
Sbjct: 777 GGSSCA--------VVPKTKEVVCTNCPTGTTGKRCELCDDGYFGDPLGRNGPVRLCRLC 828
Query: 375 DCH---PVGAAGKTCNQTTGQC-PCKDGVTGLTCNRCAPGFQQSRSPVAPCVK------- 423
C A G CN+ TG+C C G C+RC GF + P K
Sbjct: 829 QCSDNIDPNAVG-NCNRLTGECLKCIYNTAGFYCDRCKDGFFGNPLAPNPADKCKACNCN 887
Query: 424 -----------TPIPGPTEDSSPVQPQDCDSHCKPARGSYRISLKKFCKK 462
P+ G E V QDC + C P G Y + + C++
Sbjct: 888 LYGTMKQQSSCNPVTGQCECLPHVTGQDCGA-CDP--GFYNLQSGQGCER 934
Score = 65.9 bits (159), Expect = 1e-10
Identities = 48/144 (33%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARES--HACLACSCNGHARRCRFNMELYRLSG 331
C C G G C C Y +R T C+ C+CNGH+ C
Sbjct: 690 CTCPVGYGGQFCEMCLSGY-----RRETPNLGPYSPCVLCACNGHSETC----------- 733
Query: 332 RRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAA----GKTCN 387
GVC NCR NTAG HC C +G+Y D S C+ C C P G++ KT
Sbjct: 734 DPETGVC-NCRDNTAGPHCEKCSDGYYGDSTAGTSS--DCQPCPC-PGGSSCAVVPKTKE 789
Query: 388 QTTGQCPCKDGVTGLTCNRCAPGF 411
CP G TG C C G+
Sbjct: 790 VVCTNCP--TGTTGKRCELCDDGY 811
Score = 62.4 bits (150), Expect = 1e-09
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 274 CDCRHGTEGPDCGRCKP-FYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR 332
C+C G DCG C P FY + C C C+ L +G+
Sbjct: 905 CECLPHVTGQDCGACDPGFY--------NLQSGQGCERCDCHA----------LGSTNGQ 946
Query: 333 RS--GGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTT 390
G C C+ G+HC C + C+ CDCHP G+ C
Sbjct: 947 CDIRTGQC-ECQPGITGQHCERCEVNHFG------FGPEGCKPCDCHPEGSLSLQCKDD- 998
Query: 391 GQCPCKDGVTGLTCNRCAPGFQQSRS 416
G+C C++G G C++C + +RS
Sbjct: 999 GRCECREGFVGNRCDQCEENYFYNRS 1024
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 306 bits (783), Expect = 4e-83
Identities = 166/419 (39%), Positives = 219/419 (52%), Gaps = 32/419 (7%)
Query: 30 CHDEGGAPRGCVPGLVNAALGREVLASSTCGRPAT---------------RACDASDPRR 74
C+D G P+ C+P NAA GR AS TCG P + CDA+DP+R
Sbjct: 25 CYDGAGRPQRCLPVFENAAFGRLAQASHTCGSPPEDFCPHVGAAGAGAHCQRCDAADPQR 84
Query: 75 AHSPALLTSPGGTASPLCWRSESLP---RAPLNVTLTVPLGKAFELVFVSLRFCSAPPAS 131
H+ + LT W+S S+ + P +V +T+ LGKA+E+ +V L+F ++ P S
Sbjct: 85 HHNASYLTDFHSQDESTWWQSPSMAFGVQYPTSVNITLRLGKAYEITYVRLKFHTSRPES 144
Query: 132 VALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPA-PLAQPDGSGL 190
A+ K W P F+S+ C YGR P A C P G
Sbjct: 145 FAIYKRSRADGPWEPYQFYSASCQKTYGRPEGQYLRPGEDERVAFCTSEFSDISPLSGGN 204
Query: 191 LAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDP--RDMEAVVPYSYAATD 248
+AFS + P + + SP LQ+WVT+T++ + L R +T GD +D + + Y YA +D
Sbjct: 205 VAFSTLEGRPSAYNFEESPGLQEWVTSTELLISLDRLNTFGDDIFKDPKVLQSYYYAVSD 264
Query: 249 LQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHAC 308
VGGRCKCNGHAS C D G L C C+H T G DC RC PF+ DRPW R TA +H C
Sbjct: 265 FSVGGRCKCNGHASECGPDVAGQLACRCQHNTTGTDCERCLPFFQDRPWARGTAEAAHEC 324
Query: 309 LACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYR-DPGRALSD 367
L C+C+G + C F+ EL+R +G GG C +CR +TAG HC C+E FY DP
Sbjct: 325 LPCNCSGRSEECTFDRELFRSTGH--GGRCHHCRDHTAGPHCERCQENFYHWDP------ 376
Query: 368 RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQ-SRSPVAPCVKTP 425
R C+ CDC G+ C+ TG C CK VTG C+RC PGF S PC P
Sbjct: 377 RMPCQPCDCQSAGSLHLQCDD-TGTCACKPTVTGWKCDRCLPGFHSLSEGGCRPCTCNP 434
Score = 95.1 bits (235), Expect = 2e-19
Identities = 94/331 (28%), Positives = 110/331 (33%), Gaps = 115/331 (34%)
Query: 180 APLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLT----RPSTAGDPRD 235
+P P G L S+ PGL +S WV T G R+
Sbjct: 640 SPGPSPAGPVFLTEVRLTSARPGLSPPAS-----WVEICSCPTGYTGQFCESCAPGYKRE 694
Query: 236 MEAVVPYSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKP-FY-- 292
M PY+ C CN H + C +T IC C H TEGP C RC P FY
Sbjct: 695 MPQGGPYASCVP-------CTCNQHGT-CDPNTG---ICVCSHHTEGPSCERCLPGFYGN 743
Query: 293 -----------CDRPWQRA--TARESH--ACLACSCNGHARRCR-----FNMELYRLSGR 332
C P Q A T ES C C RRC F + L G
Sbjct: 744 PFAGQADDCQPCPCPGQSACTTIPESREVVCTHCPPGQRGRRCEVCDDGFFGDPLGLFGH 803
Query: 333 RS----------------------GGVCLNCRHNTAGRHCHYCREGFY------------ 358
G CL C HNT G HC +C+EGFY
Sbjct: 804 PQPCHQCQCSGNVDPNAVGNCDPLSGHCLRCLHNTTGDHCEHCQEGFYGSALAPRPADKC 863
Query: 359 --------------------------------RDPGRA------LSDRRACRACDCHPVG 380
RD R L R CR+C CHP+G
Sbjct: 864 MPCSCHPQGSVSEQMPCDPVTGQCSCLPHVTARDCSRCYPGFFDLQPGRGCRSCKCHPLG 923
Query: 381 AAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
+ C+ TGQC C+ GVTG C+RC GF
Sbjct: 924 SQEDQCHPKTGQCTCRPGVTGQACDRCQLGF 954
Score = 65.5 bits (158), Expect = 1e-10
Identities = 41/141 (29%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN---GHARRCRFNMELYRLS 330
C C DC RC P + D + C +C C+ +C
Sbjct: 887 CSCLPHVTARDCSRCYPGFFD-------LQPGRGCRSCKCHPLGSQEDQCH--------- 930
Query: 331 GRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTT 390
G C CR G+ C C+ GF+ G ++ + CRAC C P+GAA C++
Sbjct: 931 --PKTGQC-TCRPGVTGQACDRCQLGFF---GFSI---KGCRACRCSPLGAASAQCHE-N 980
Query: 391 GQCPCKDGVTGLTCNRCAPGF 411
G C C+ G G C+RC F
Sbjct: 981 GTCVCRPGFEGYKCDRCHDNF 1001
>gi|93204871 netrin 4 [Homo sapiens]
Length = 628
Score = 228 bits (580), Expect = 2e-59
Identities = 187/652 (28%), Positives = 277/652 (42%), Gaps = 120/652 (18%)
Query: 8 LLLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRPATRA- 66
LLL T+ AA G + C + C P + N ALGR++ A +TCG+ AT
Sbjct: 8 LLLWGCTVVAAGLSGVAGVSSRCE------KACNPRMGNLALGRKLWADTTCGQNATELY 61
Query: 67 ------------------CDASDPRRAHSPALLTSPGGTASPLCWRS-ESLPRAPLNVTL 107
C+A+ P AH P+ + W+S E + R + + L
Sbjct: 62 CFYSENTDLTCRQPKCDKCNAAYPHLAHLPSAMADSSFRFPRTWWQSAEDVHREKIQLDL 121
Query: 108 TVPLGKAFELVFVSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANG 167
F + + F S PA++ L +SQD G++W P +F+++C +G
Sbjct: 122 EAE----FYFTHLIVMFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVK- 176
Query: 168 PAGPGPEALC---FPAPLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRV-V 223
A+C + +P P G + F S P + S +Q+ + T++RV +
Sbjct: 177 -----KGAICTSKYSSPF--PCTGGEVIFKAL-SPPYDTENPYSAKVQEQLKITNLRVQL 228
Query: 224 LTRPSTAGDPRDMEAVVPY--SYAATDLQVGGRCKCNGHASRCL-------LDTQG--HL 272
L R S D+ + YA D V G C CNGHA +C+ + G H+
Sbjct: 229 LKRQSCPCQRNDLNEEPQHFTHYAIYDFIVKGSCFCNGHADQCIPVHGFRPVKAPGTFHM 288
Query: 273 I---CDCRHGTEGPDCGRCKPFYCDRPWQRATARES--HACLACSCNGHARRCRFNMELY 327
+ C C+H T G C C P Y DRPW+ A + + C C CNGHA C F++ ++
Sbjct: 289 VHGKCMCKHNTAGSHCQHCAPLYNDRPWEAADGKTGAPNECRTCKCNGHADTCHFDVNVW 348
Query: 328 RLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCN 387
SG RSGGVC +C+HNT G++C C+ GFYRD R S AC+ C CHPVG+A N
Sbjct: 349 EASGNRSGGVCDDCQHNTEGQYCQRCKPGFYRDLRRPFSAPDACKPCSCHPVGSAVLPAN 408
Query: 388 QTT------GQCPCKDGVTGLTCNRCAPGF-------------QQSRSPV-APCVKT--- 424
T G CPCK GV G C+RC G+ S P+ C+ +
Sbjct: 409 SVTFCDPSNGDCPCKPGVAGRRCDRCMVGYWGFGDYGCRPCDCAGSCDPITGDCISSHTD 468
Query: 425 -----------PIPGPTED----------SSPVQPQDCDSHCKPARGSYRISLKKFC--K 461
P+ +E S+ + C+ CK + K FC K
Sbjct: 469 IDWYHEVPDFRPVHNKSEPAWEWEDAQGFSALLHSGKCE--CKEQTLG---NAKAFCGMK 523
Query: 462 KDYAVQVAVGARGEARGAWTRFPVAVLAVFRSGEERARRGSSALWVPA-GDAACGCPRLL 520
Y +++ + +G V + V +S + + RG L+ + D C CP L
Sbjct: 524 YSYVLKIKI-LSAHDKGTHVEVNVKIKKVLKSTKLKIFRGKRTLYPESWTDRGCTCPILN 582
Query: 521 PGRRYLLLGGGPGAAAGGAGGRGPGLIAARGSLVLPWRDAWTRRLRRLQRRE 572
PG YL+ AG R LI S V W+ + R++ + +RE
Sbjct: 583 PGLEYLV--------AGHEDIRTGKLIVNMKSFVQHWKPSLGRKVMDILKRE 626
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 227 bits (579), Expect = 2e-59
Identities = 166/496 (33%), Positives = 223/496 (44%), Gaps = 70/496 (14%)
Query: 5 PW----GLLLTAGTLFAALSPGPPAPADPCHDEGGAPRG-CVPGLVNAALGR--EVLASS 57
PW GLLL+ A +P P P G RG C P + +GR + ASS
Sbjct: 15 PWELRLGLLLSVLAATLAQAPAPDVP--------GCSRGSCYPATGDLLVGRADRLTASS 66
Query: 58 TCGRPAT------------RACDASDPRRAHSPA----------LLTSPGGTASPLCWRS 95
TCG + C D RR S ++TS W+S
Sbjct: 67 TCGLNGPQPYCIVSHLQDEKKCFLCDSRRPFSARDNPHSHRIQNVVTSFAPQRRAAWWQS 126
Query: 96 ESLPRAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCD 155
E+ A VT+ + L F + + F + PA++ + +S D GR+W +FS C
Sbjct: 127 ENGIPA---VTIQLDLEAEFHFTHLIMTFKTFRPAAMLVERSADFGRTWHVYRYFSYDCG 183
Query: 156 LDYGRLPAPANGPAGPGPEALCFPA-PLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDW 214
D+ +P P + +C +P G + + + D + P D SS + Q+
Sbjct: 184 ADFPGVPL---APPRHWDDVVCESRYSEIEPSTEGEVIYRVLDPAIPIPDPYSSRI-QNL 239
Query: 215 VTATDVRVVLTRPSTAGD----PRDMEAVVPYSYAATDLQVGGRCKCNGHASRCL----- 265
+ T++RV LTR T GD PR E Y YA +L V G C C GHAS C
Sbjct: 240 LKITNLRVNLTRLHTLGDNLLDPR-REIREKYYYALYELVVRGNCFCYGHASECAPAPGA 298
Query: 266 ---LDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRF 322
+ H C C+H T G +C +C+ FY D PW+ A SHAC C C+GH C F
Sbjct: 299 PAHAEGMVHGACICKHNTRGLNCEQCQDFYRDLPWRPAEDGHSHACRKCECHGHTHSCHF 358
Query: 323 NMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAA 382
+M +Y SG SGGVC C+HNTAGRHC CR FYRDP + L D CR+CDC P+G+
Sbjct: 359 DMAVYLASGNVSGGVCDGCQHNTAGRHCELCRPFFYRDPTKDLRDPAVCRSCDCDPMGSQ 418
Query: 383 -GKTCNQ--------TTGQCPCKDGVTGLTCNRCAPG-FQQSRSPVAPC--VKTPIPGPT 430
G C+ +GQC CK+ V G C +C G F S S C + G
Sbjct: 419 DGGRCDSHDDPALGLVSGQCRCKEHVVGTRCQQCRDGFFGLSISDRLGCRRCQCNARGTV 478
Query: 431 EDSSPVQPQDCDSHCK 446
S+P P +CK
Sbjct: 479 PGSTPCDPNSGSCYCK 494
Score = 94.4 bits (233), Expect = 3e-19
Identities = 71/231 (30%), Positives = 89/231 (38%), Gaps = 40/231 (17%)
Query: 224 LTRPSTAGDPRDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLDTQGHLICDCRHGTEGP 283
L +P G D+ A Y + T Q C+C+ + L + C CR G G
Sbjct: 803 LCKPGVVGRRCDLCAPGYYGFGPTGCQA---CQCSHEGALSSLCEKTSGQCLCRTGAFGL 859
Query: 284 DCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRH 343
C RC+ P +C C CNGHA C + G CL CR
Sbjct: 860 RCDRCQRGQWGFP----------SCRPCVCNGHADECNTHT-----------GACLGCRD 898
Query: 344 NTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGK-----TCNQTTGQ----CP 394
+T G HC C GF+ DP L CR C C P G + +C+Q C
Sbjct: 899 HTGGEHCERCIAGFHGDP--RLPYGGQCRPCPC-PEGPGSQRHFATSCHQDEYSQQIVCH 955
Query: 395 CKDGVTGLTCNRCAPG-FQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSH 444
C+ G TGL C CAPG F P C G + P+ P CD H
Sbjct: 956 CRAGYTGLRCEACAPGHFGDPSRPGGRCQLCECSG---NIDPMDPDACDPH 1003
Score = 85.5 bits (210), Expect = 1e-16
Identities = 56/176 (31%), Positives = 73/176 (41%), Gaps = 30/176 (17%)
Query: 254 RCKCN---GHASRCLLDTQGHLI-----CDCRHGTEGPDCGRCKPFYCDRPWQRATARES 305
RC CN + +C Q H C C +GP C RC P + W +
Sbjct: 1037 RCTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNF----WNLTSG--- 1089
Query: 306 HACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRAL 365
H C C+C H R R + G C +CR GR C C+E + DPG
Sbjct: 1090 HGCQPCAC--HPSRARGP------TCNEFTGQC-HCRAGFGGRTCSECQELHWGDPGLQ- 1139
Query: 366 SDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPC 421
C ACDC G C++ TG C C+ GV+G+ C++CA GF PC
Sbjct: 1140 -----CHACDCDSRGIDTPQCHRFTGHCSCRPGVSGVRCDQCARGFSGIFPACHPC 1190
Score = 84.0 bits (206), Expect = 4e-16
Identities = 55/171 (32%), Positives = 70/171 (40%), Gaps = 37/171 (21%)
Query: 252 GGRCK---------------CNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRP 296
GGRC+ C+ H +CL C H TEGP C CKP + +
Sbjct: 980 GGRCQLCECSGNIDPMDPDACDPHTGQCLR---------CLHHTEGPHCAHCKPGFHGQ- 1029
Query: 297 WQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREG 356
AR+S C C+CN + + S G C C N G C C
Sbjct: 1030 ----AARQS--CHRCTCNLLGTNPQQCPSPDQCHCDPSSGQC-PCLPNVQGPSCDRCAPN 1082
Query: 357 FYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRC 407
F+ L+ C+ C CHP A G TCN+ TGQC C+ G G TC+ C
Sbjct: 1083 FWN-----LTSGHGCQPCACHPSRARGPTCNEFTGQCHCRAGFGGRTCSEC 1128
Score = 74.3 bits (181), Expect = 3e-13
Identities = 56/222 (25%), Positives = 82/222 (36%), Gaps = 72/222 (32%)
Query: 254 RCKCNGHASRCLLDTQGHL--------ICD-CRHGTEGPDCGRCKPFYCDRPWQRATARE 304
+C+C+GH C D +L +CD C+H T G C C+PF+ P + R+
Sbjct: 346 KCECHGHTHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCELCRPFFYRDPTK--DLRD 403
Query: 305 SHACLACSCNGHAR----RCRFNME--LYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
C +C C+ RC + + L +SG+ C+ + G C CR+GF+
Sbjct: 404 PAVCRSCDCDPMGSQDGGRCDSHDDPALGLVSGQ------CRCKEHVVGTRCQQCRDGFF 457
Query: 359 R--------------------------DP------------GRALS-----------DRR 369
DP GR D
Sbjct: 458 GLSISDRLGCRRCQCNARGTVPGSTPCDPNSGSCYCKRLVTGRGCDRCLPGHWGLSHDLL 517
Query: 370 ACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
CR CDC GA C++ TGQC C+ + G C + PG+
Sbjct: 518 GCRPCDCDVGGALDPQCDEGTGQCHCRQHMVGRRCEQVQPGY 559
Score = 65.5 bits (158), Expect = 1e-10
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 335 GGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCP 394
GG CL C+ GR C C G+Y C+AC C GA C +T+GQC
Sbjct: 799 GGQCL-CKPGVVGRRCDLCAPGYYG------FGPTGCQACQCSHEGALSSLCEKTSGQCL 851
Query: 395 CKDGVTGLTCNRCAPGFQQSRSPVAPCV 422
C+ G GL C+RC G Q PCV
Sbjct: 852 CRTGAFGLRCDRCQRG-QWGFPSCRPCV 878
Score = 50.4 bits (119), Expect = 4e-06
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 374 CDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
C C+P G+ CN GQC CK GV G C+ CAPG+
Sbjct: 783 CQCNPQGSLSSECNPHGGQCLCKPGVVGRRCDLCAPGY 820
Score = 31.6 bits (70), Expect = 2.1
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 29/114 (25%)
Query: 254 RCKCNGHASRCLLDTQGHLICD-------CRHGTEGPDCGRCKPFYCDRPWQRATARESH 306
RC+CN + G CD C+ G C RC P + W + +
Sbjct: 469 RCQCNARGT-----VPGSTPCDPNSGSCYCKRLVTGRGCDRCLPGH----W--GLSHDLL 517
Query: 307 ACLACSCN-GHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYR 359
C C C+ G A + + G C +CR + GR C + G++R
Sbjct: 518 GCRPCDCDVGGALDPQCD---------EGTGQC-HCRQHMVGRRCEQVQPGYFR 561
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 210 bits (534), Expect = 3e-54
Identities = 135/421 (32%), Positives = 202/421 (47%), Gaps = 60/421 (14%)
Query: 40 CVPGLVNAALGR--EVLASSTCGRPATRA------------CDASDPRRAHSPA------ 79
C P + +GR +++ASSTCG + C D R + P
Sbjct: 28 CHPTTGDLLVGRNTQLMASSTCGLSRAQKYCILSYLEGEQKCFICDSRFPYDPYDQPNSH 87
Query: 80 ----LLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVALL 135
++ S W+SE+ +V++ + L F + L F + PA++ +
Sbjct: 88 TIENVIVSFEPDREKKWWQSEN---GLDHVSIRLDLEALFRFSHLILTFKTFRPAAMLVE 144
Query: 136 KSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPAPL-AQPDGSGLLAFS 194
+S D+G +W +F+ C + P +G A + +C +P G +
Sbjct: 145 RSTDYGHNWKVFKYFAKDCATSF---PNITSGQAQGVGDIVCDSKYSDIEPSTGGEVVLK 201
Query: 195 MQDSSPPGLDLDS--SPVLQDWVTATDVRVVLTRPSTAGDP----RDMEAVVPYSYAATD 248
+ D P ++++ SP +QD VT T++R+ T+ T GD R +++ Y YA +
Sbjct: 202 VLD---PSFEIENPYSPYIQDLVTLTNLRINFTKLHTLGDALLGRRQNDSLDKYYYALYE 258
Query: 249 LQVGGRCKCNGHASRC---------LLDTQG--HLICDCRHGTEGPDCGRCKPFYCDRPW 297
+ V G C CNGHAS C + G H C C+H T+GP+C RCK F+ D PW
Sbjct: 259 MIVRGSCFCNGHASECRPMQKMRGDVFSPPGMVHGQCVCQHNTDGPNCERCKDFFQDAPW 318
Query: 298 QRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGF 357
+ A + +AC +CSCN H+ RC F+M Y SG SGGVC +C+HNT G+HC CR F
Sbjct: 319 RPAADLQDNACRSCSCNSHSSRCHFDMTTYLASGGLSGGVCEDCQHNTEGQHCDRCRPLF 378
Query: 358 YRDPGRALSDRRACRACDCHPVGA-AGKTC--------NQTTGQCPCKDGVTGLTCNRCA 408
YRDP + +SD AC C+C P G +G C GQC CK+ V G C++C
Sbjct: 379 YRDPLKTISDPYACIPCECDPDGTISGGICVSHSDPALGSVAGQCLCKENVEGAKCDQCK 438
Query: 409 P 409
P
Sbjct: 439 P 439
Score = 95.1 bits (235), Expect = 2e-19
Identities = 68/204 (33%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
Query: 272 LICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHA-CLACSCNGHARRCRFNMELYRL- 329
+IC+C G G CG C + P R S A C C+CN N+++
Sbjct: 936 VICNCLQGYTGTQCGECSTGFYGNP------RISGAPCQPCACNN-------NIDVTDPE 982
Query: 330 SGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCH---------PVG 380
S R G CL C HNT G +C C+ G Y G AL+ + CR C CH P G
Sbjct: 983 SCSRVTGECLRCLHNTQGANCQLCKPGHY---GSALN--QTCRRCSCHASGVSPMECPPG 1037
Query: 381 AAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSPVQPQD 440
C+ TG CPC VTGL C+RCA G+ + P C T SS
Sbjct: 1038 GGACLCDPVTGACPCLPNVTGLACDRCADGY-WNLVPGRGCQSCDCDPRTSQSSHCDQLT 1096
Query: 441 CDSHCKPARGSYRISLKKFCKKDY 464
CK G R S C+++Y
Sbjct: 1097 GQCPCKLGYGGKRCS---ECQENY 1117
Score = 88.2 bits (217), Expect = 2e-17
Identities = 62/242 (25%), Positives = 88/242 (36%), Gaps = 95/242 (39%)
Query: 246 ATDLQVGG--RCKCNGHASRCLLDTQGHL--------IC-DCRHGTEGPDCGRCKPFYCD 294
A DLQ C CN H+SRC D +L +C DC+H TEG C RC+P +
Sbjct: 321 AADLQDNACRSCSCNSHSSRCHFDMTTYLASGGLSGGVCEDCQHNTEGQHCDRCRPLFYR 380
Query: 295 RPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLN-------------- 340
P + T + +AC+ C C+ G SGG+C++
Sbjct: 381 DPLK--TISDPYACIPCECDP--------------DGTISGGICVSHSDPALGSVAGQCL 424
Query: 341 CRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVG-------------------- 380
C+ N G C C+ Y G + +D C+ CDC+P+G
Sbjct: 425 CKENVEGAKCDQCKPNHY---GLSATDPLGCQPCDCNPLGSLPFLTCDVDTGQCLCLSYV 481
Query: 381 -------------------------------AAGKTCNQTTGQCPCKDGVTGLTCNRCAP 409
A C+ GQC C+ VTG +C+ AP
Sbjct: 482 TGAHCEECTVGYWGLGNHLHGCSPCDCDIGGAYSNVCSPKNGQCECRPHVTGRSCSEPAP 541
Query: 410 GF 411
G+
Sbjct: 542 GY 543
Score = 74.3 bits (181), Expect = 3e-13
Identities = 57/194 (29%), Positives = 72/194 (37%), Gaps = 39/194 (20%)
Query: 241 PYSYAATDLQVGGRCKCNGHAS------------RCLLDTQGHLICDCRHGTEGPDCGRC 288
P Y + Q RC C HAS CL D C C G C RC
Sbjct: 1008 PGHYGSALNQTCRRCSC--HASGVSPMECPPGGGACLCDPVTGA-CPCLPNVTGLACDRC 1064
Query: 289 KPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGR 348
Y W R C +C C+ + +L G C C+ G+
Sbjct: 1065 ADGY----WNLVPGR---GCQSCDCDPRTSQSSHCDQLT--------GQC-PCKLGYGGK 1108
Query: 349 HCHYCREGFYRDP-GRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRC 407
C C+E +Y DP GR C CDC+ G C+ TG C C++GV+G C+RC
Sbjct: 1109 RCSECQENYYGDPPGR-------CIPCDCNRAGTQKPICDPDTGMCRCREGVSGQRCDRC 1161
Query: 408 APGFQQSRSPVAPC 421
A G Q C
Sbjct: 1162 ARGHSQEFPTCLQC 1175
Score = 69.3 bits (168), Expect = 9e-12
Identities = 41/122 (33%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 290 PFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRH 349
P C+R +A+ +AC C+ S R GG C C+ GR
Sbjct: 748 PGACERLIISMSAKLHDGAVACKCHPQGS--------VGSSCSRLGGQC-QCKPLVVGRC 798
Query: 350 CHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAP 409
C C G Y D G C C CHP G+ C+Q TGQCPC V+G C+RC
Sbjct: 799 CDRCSTGSY-DLGH-----HGCHPCHCHPQGSKDTVCDQVTGQCPCHGEVSGRRCDRCLA 852
Query: 410 GF 411
G+
Sbjct: 853 GY 854
Score = 68.2 bits (165), Expect = 2e-11
Identities = 61/233 (26%), Positives = 83/233 (35%), Gaps = 53/233 (22%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN 314
C C+ S+ + Q C C G C RC Y P +C C CN
Sbjct: 817 CHCHPQGSKDTVCDQVTGQCPCHGEVSGRRCDRCLAGYFGFP----------SCHPCPCN 866
Query: 315 GHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
A C G C NC T GR+C C +G+Y +P S + CR C
Sbjct: 867 RFAELCD-----------PETGSCFNCGGFTTGRNCERCIDGYYGNP----SSGQPCRPC 911
Query: 375 DCHPVGAAGK----TCNQTTGQ----CPCKDGVTGLTCNRCAPGF----QQSRSPVAPCV 422
C ++ + +C Q C C G TG C C+ GF + S +P PC
Sbjct: 912 LCPDDPSSNQYFAHSCYQNLWSSDVICNCLQGYTGTQCGECSTGFYGNPRISGAPCQPCA 971
Query: 423 KTPIPGPTEDSS-------------PVQPQDCDSHCKPARGSYRISLKKFCKK 462
T+ S Q +C CKP G Y +L + C++
Sbjct: 972 CNNNIDVTDPESCSRVTGECLRCLHNTQGANCQL-CKP--GHYGSALNQTCRR 1021
Score = 63.2 bits (152), Expect = 6e-10
Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 29/174 (16%)
Query: 310 ACSCNGHARRCRFNMELYRLSGRRSG---GVCLNCRHNTAGRHCHYCREGFYRDPGRALS 366
+C CNGHA CR ++ G G C+ C+HNT G +C C++ F P R +
Sbjct: 264 SCFCNGHASECRPMQKMRGDVFSPPGMVHGQCV-CQHNTDGPNCERCKDFFQDAPWRPAA 322
Query: 367 DRR--ACRACDCHPV---------------GAAGKTCNQTTGQCPCKDGVTGLTCNRCAP 409
D + ACR+C C+ G +G C C+ G C+RC P
Sbjct: 323 DLQDNACRSCSCNSHSSRCHFDMTTYLASGGLSGGVCED------CQHNTEGQHCDRCRP 376
Query: 410 GFQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSHCKPARGSYRISLKKFCKKD 463
F + IP + + C SH PA GS ++ + CK++
Sbjct: 377 LFYRDPLKTISDPYACIPCECDPDGTISGGICVSHSDPALGS--VAGQCLCKEN 428
>gi|164414431 netrin G1 isoform 1 [Homo sapiens]
Length = 539
Score = 199 bits (505), Expect = 8e-51
Identities = 127/395 (32%), Positives = 184/395 (46%), Gaps = 52/395 (13%)
Query: 58 TCGRP------------ATRACDASDPRRAHSPALLTSPGGTASPLCWRSESLPR--APL 103
TCG P CDAS P AH P L+ G W+S + PL
Sbjct: 71 TCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPL 130
Query: 104 NVTLTVPLGKAFELVF-VSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLP 162
V +T+ K EL + + F S P + L KS D+GR+W P ++++ C LD +
Sbjct: 131 QVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDC-LDAFHMD 189
Query: 163 APANGPAGPGP--EALCFPA-PLAQPDGSGLLAFSMQDS----SPPGL--------DLDS 207
+ E +C S ++ F ++D + P L LD+
Sbjct: 190 PKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDT 249
Query: 208 SPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLD 267
+ L+D+ T TD+R+ L RP+ D + Y YA +D++V GRCKCN HA+ C+ D
Sbjct: 250 TKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYD 309
Query: 268 TQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRAT-----ARESHACLA-------CSCNG 315
L C+C H T GPDCG+CK Y RPW + ++ C+ C C G
Sbjct: 310 NS-KLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGNCECFG 368
Query: 316 HARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACD 375
H+ RC + L + +C++C+HNT G+HC CR G++R+ L D C C
Sbjct: 369 HSNRCSYIDLLNTV-------ICVSCKHNTRGQHCELCRLGYFRNASAQLDDENVCIECY 421
Query: 376 CHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
C+P+G+ CN +G C CK G TG C+ C PG
Sbjct: 422 CNPLGSIHDRCN-GSGFCECKTGTTGPKCDECLPG 455
>gi|167614504 laminin, beta 1 precursor [Homo sapiens]
Length = 1786
Score = 198 bits (503), Expect = 1e-50
Identities = 144/491 (29%), Positives = 215/491 (43%), Gaps = 61/491 (12%)
Query: 7 GLLLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGR--EVLASSTCG--RP 62
GLL F AL +P G A C P + +GR ++ +STCG +P
Sbjct: 2 GLLQLLAFSFLALCRARVRAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKP 61
Query: 63 ATRA-------------CDASDPRRAH---SPALLTSPGGTASP----LCWRSESLPRAP 102
C++ DP L+ + T +P + W+SE+
Sbjct: 62 EPYCIVSHLQEDKKCFICNSQDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSEN---GV 118
Query: 103 LNVTLTVPLGKAFELVFVSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLP 162
NVT+ + L F + + F + PA++ + +S D G++W +F+ C+ + P
Sbjct: 119 ENVTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWGVYRYFAYDCEASF---P 175
Query: 163 APANGPAGPGPEALCFPAPL-AQPDGSGLLAFSMQDSSPPGLDLDS--SPVLQDWVTATD 219
+ GP + +C +P G + F D P ++ SP +Q+ + T+
Sbjct: 176 GISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALD---PAFKIEDPYSPRIQNLLKITN 232
Query: 220 VRVVLTRPSTAGD---PRDMEAVVPYSYAATDLQVGGRCKCNGHASRCL--------LDT 268
+R+ + T GD ME Y YA D+ V G C C GHAS C ++
Sbjct: 233 LRIKFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGFNEEVEG 292
Query: 269 QGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYR 328
H C CRH T+G +C C FY D PW+ A R S+AC C+CN H+ C F+M +Y
Sbjct: 293 MVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSISCHFDMAVYL 352
Query: 329 LSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGK-TCN 387
+G SGGVC +C+HNT GR+C C+ +Y+ P R + D C C C P G+ + C+
Sbjct: 353 ATGNVSGGVCDDCQHNTMGRNCEQCKPFYYQHPERDIRDPNFCERCTCDPAGSQNEGICD 412
Query: 388 QTT--------GQCPCKDGVTGLTCNRCAPGFQ--QSRSPVA--PCVKTPIPGPTEDSSP 435
T GQC CK V G C+ C GF S P C P+ G +P
Sbjct: 413 SYTDFSTGLIAGQCRCKLNVEGEHCDVCKEGFYDLSSEDPFGCKSCACNPL-GTIPGGNP 471
Query: 436 VQPQDCDSHCK 446
+ +CK
Sbjct: 472 CDSETGHCYCK 482
Score = 83.6 bits (205), Expect = 5e-16
Identities = 53/170 (31%), Positives = 68/170 (40%), Gaps = 32/170 (18%)
Query: 252 GGRCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLAC 311
G C+C+ +CL C G +C RC P WQ A+ C C
Sbjct: 1042 GSDCQCDKATGQCL----------CLPNVIGQNCDRCAP----NTWQLASGT---GCDPC 1084
Query: 312 SCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRAC 371
+CN + S G C C GR C C+E F+ DP C
Sbjct: 1085 NCNA--------AHSFGPSCNEFTGQC-QCMPGFGGRTCSECQELFWGDPDVE------C 1129
Query: 372 RACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPC 421
RACDC P G C+Q+TGQC C +GV G C++C G+ PC
Sbjct: 1130 RACDCDPRGIETPQCDQSTGQCVCVEGVEGPRCDKCTRGYSGVFPDCTPC 1179
Score = 75.9 bits (185), Expect = 1e-13
Identities = 61/225 (27%), Positives = 87/225 (38%), Gaps = 65/225 (28%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFY--------------CDRPWQRA 300
C+CNGHA C D +C+ T G +C RC Y C P
Sbjct: 867 CQCNGHADDC--DPVTGECLNCQDYTMGHNCERCLAGYYGDPIIGSGDHCRPCPCPDGPD 924
Query: 301 TARE-SHAC--------LACSCN-----------------------GHARRCRFNMELYR 328
+ R+ + +C LAC C+ G + C+ + +
Sbjct: 925 SGRQFARSCYQDPVTLQLACVCDPGYIGSRCDDCASGYFGNPSEVGGSCQPCQCHNNIDT 984
Query: 329 LSGR---RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKT 385
+ G CL C ++T G HC +CR G+Y D + ++ CR C C+ +G +
Sbjct: 985 TDPEACDKETGRCLKCLYHTEGEHCQFCRFGYYGD-----ALQQDCRKCVCNYLGTVQEH 1039
Query: 386 CN-------QTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVA--PC 421
CN + TGQC C V G C+RCAP Q S PC
Sbjct: 1040 CNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTWQLASGTGCDPC 1084
Score = 71.6 bits (174), Expect = 2e-12
Identities = 59/217 (27%), Positives = 78/217 (35%), Gaps = 57/217 (26%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C G C RC P + P +C C CNGHA C
Sbjct: 840 CHCFQGVYARQCDRCLPGHWGFP----------SCQPCQCNGHADDCD-----------P 878
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQ- 392
G CLNC+ T G +C C G+Y DP D CR C C +G+ ++ Q
Sbjct: 879 VTGECLNCQDYTMGHNCERCLAGYYGDPIIGSGDH--CRPCPCPDGPDSGRQFARSCYQD 936
Query: 393 -------CPCKDGVTGLTCNRCAPGFQQSRSPVA----PCVKTPIPGPTEDSSPVQPQDC 441
C C G G C+ CA G+ + S V PC + P+ C
Sbjct: 937 PVTLQLACVCDPGYIGSRCDDCASGYFGNPSEVGGSCQPC------QCHNNIDTTDPEAC 990
Query: 442 D---------------SHCKPAR-GSYRISLKKFCKK 462
D HC+ R G Y +L++ C+K
Sbjct: 991 DKETGRCLKCLYHTEGEHCQFCRFGYYGDALQQDCRK 1027
Score = 65.5 bits (158), Expect = 1e-10
Identities = 37/103 (35%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQC 393
+GG C CR N GR C+ C PG C+ C+CH G+ CN TGQC
Sbjct: 788 NGGQC-QCRPNVVGRTCNRCA------PGTFGFGPSGCKPCECHLQGSVNAFCNPVTGQC 840
Query: 394 PCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSPV 436
C GV C+RC PG S C G +D PV
Sbjct: 841 HCFQGVYARQCDRCLPGHWGFPS----CQPCQCNGHADDCDPV 879
Score = 56.2 bits (134), Expect = 8e-08
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 373 ACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG-FQQSRSPVAPC---------- 421
AC+C P G+ C+ GQC C+ V G TCNRCAPG F S PC
Sbjct: 772 ACECDPQGSLSSVCDPNGGQCQCRPNVVGRTCNRCAPGTFGFGPSGCKPCECHLQGSVNA 831
Query: 422 VKTPIPGPTEDSSPVQPQDCDSHCKPARGSY 452
P+ G V + CD C P +
Sbjct: 832 FCNPVTGQCHCFQGVYARQCD-RCLPGHWGF 861
Score = 30.8 bits (68), Expect = 3.6
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 270 GHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN-GHARRCRFNMELYR 328
GH C C+ G C +C P + W + + C C C+ G A N +
Sbjct: 477 GH--CYCKRLVTGQHCDQCLPEH----W--GLSNDLDGCRPCDCDLGGA----LNNSCFA 524
Query: 329 LSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
SG+ S CR + GR C+ G+Y
Sbjct: 525 ESGQCS------CRPHMIGRQCNEVEPGYY 548
>gi|62868217 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 196 bits (498), Expect = 5e-50
Identities = 127/414 (30%), Positives = 196/414 (47%), Gaps = 45/414 (10%)
Query: 31 HDEGGAPRG-CVPGLVNAALGRE--VLASSTCG--RPATRA------------CDASDPR 73
H + RG C P + + +GR + ASSTCG +P T CD+ P
Sbjct: 16 HAQQACSRGACYPPVGDLLVGRTRFLRASSTCGLTKPETYCTQYGEWQMKCCKCDSRQPH 75
Query: 74 RAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVA 133
+S + + ++ P+ W P V+L + L + F+L V + F PA +
Sbjct: 76 NYYSHRV-ENVASSSGPMRWWQSQNDVNP--VSLQLDLDRRFQLQEVMMEFQGPMPAGML 132
Query: 134 LLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPAPLAQPDG---SGL 190
+ +S D G++W + ++ C + R+ G + C P +P+ G
Sbjct: 133 IERSSDFGKTWRVYQYLAADCTSTFPRV---RQGRPQSWQDVRCQSLP-QRPNARLNGGK 188
Query: 191 LAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYS--YAATD 248
+ ++ D G+ S +Q+ T++RV TR + P P S YA +
Sbjct: 189 VQLNLMDLVS-GIPATQSQKIQEVGEITNLRVNFTRLA----PVPQRGYHPPSAYYAVSQ 243
Query: 249 LQVGGRCKCNGHASRCL----------LDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQ 298
L++ G C C+GHA RC Q H +C C+H T GP+C RC PFY +RPW+
Sbjct: 244 LRLQGSCFCHGHADRCAPKPGASAGPSTAVQVHDVCVCQHNTAGPNCERCAPFYNNRPWR 303
Query: 299 RATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
A +++H C C CNGH+ C F+ ++ S GGVC NCR +T G++C C+ ++
Sbjct: 304 PAEGQDAHECQRCDCNGHSETCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYF 363
Query: 359 RDPGRALSDRRACRACDCHPVGAA-GKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
R+ S + C +C+C P GA G C+ TGQC CK+ V G C+ C PGF
Sbjct: 364 RNRRPGASIQETCISCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGF 417
Score = 75.1 bits (183), Expect = 2e-13
Identities = 59/213 (27%), Positives = 79/213 (37%), Gaps = 70/213 (32%)
Query: 254 RCKCNGHASRCLLD------TQGHL--ICD-CRHGTEGPDCGRCKPFYCDRPWQRATARE 304
RC CNGH+ C D +QG +CD CR TEG +C RC+ Y A+ +E
Sbjct: 315 RCDCNGHSETCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYFRNRRPGASIQE 374
Query: 305 SHACLACSCNGHA-------------------------------------------RRCR 321
+ C++C C+ RC
Sbjct: 375 T--CISCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGFTGLTYANPQGCHRCD 432
Query: 322 FNMELYRLSGRRS------GGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACD 375
N+ L RR G CL C N G C C ++ L+ + C C
Sbjct: 433 CNI----LGSRRDMPCDEESGRCL-CLPNVVGPKCDQCAPYHWK-----LASGQGCEPCA 482
Query: 376 CHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCA 408
C P + CNQ TGQCPC++G GL C+ A
Sbjct: 483 CDPHNSLSPQCNQFTGQCPCREGFGGLMCSAAA 515
Score = 70.5 bits (171), Expect = 4e-12
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 37/183 (20%)
Query: 254 RCKCNGHASRCLLDTQGHLICD-------CRHGTEGPDCGRCKPFYCDRPWQRATARESH 306
RC CN +L ++ + CD C GP C +C P++ W+ A+ +
Sbjct: 430 RCDCN------ILGSRRDMPCDEESGRCLCLPNVVGPKCDQCAPYH----WKLASGQ--- 476
Query: 307 ACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALS 366
C C+C+ H + + + +G+ CR G C + P R
Sbjct: 477 GCEPCACDPHNS---LSPQCNQFTGQ------CPCREGFGGLMCSAA--AIRQCPDRTYG 525
Query: 367 D-RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVA----PC 421
D CRACDC G G C++ +G+C C+ G+TG C++C G+ +R PV PC
Sbjct: 526 DVATGCRACDCDFRGTEGPGCDKASGRCLCRPGLTGPRCDQCQRGY-CNRYPVCVACHPC 584
Query: 422 VKT 424
+T
Sbjct: 585 FQT 587
Score = 57.4 bits (137), Expect = 4e-08
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 310 ACSCNGHARRC--RFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALS- 366
+C C+GHA RC + + + VC+ C+HNTAG +C C + P R
Sbjct: 249 SCFCHGHADRCAPKPGASAGPSTAVQVHDVCV-CQHNTAGPNCERCAPFYNNRPWRPAEG 307
Query: 367 -DRRACRACDCH---------------PVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
D C+ CDC+ GA G C+ C+D G C RC
Sbjct: 308 QDAHECQRCDCNGHSETCHFDPAVFAASQGAYGGVCDN------CRDHTEGKNCERCQLH 361
Query: 411 FQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCD 442
+ ++R P A +T I + V CD
Sbjct: 362 YFRNRRPGASIQETCISCECDPDGAVPGAPCD 393
>gi|62868215 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 196 bits (498), Expect = 5e-50
Identities = 127/414 (30%), Positives = 196/414 (47%), Gaps = 45/414 (10%)
Query: 31 HDEGGAPRG-CVPGLVNAALGRE--VLASSTCG--RPATRA------------CDASDPR 73
H + RG C P + + +GR + ASSTCG +P T CD+ P
Sbjct: 16 HAQQACSRGACYPPVGDLLVGRTRFLRASSTCGLTKPETYCTQYGEWQMKCCKCDSRQPH 75
Query: 74 RAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVA 133
+S + + ++ P+ W P V+L + L + F+L V + F PA +
Sbjct: 76 NYYSHRV-ENVASSSGPMRWWQSQNDVNP--VSLQLDLDRRFQLQEVMMEFQGPMPAGML 132
Query: 134 LLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPAPLAQPDG---SGL 190
+ +S D G++W + ++ C + R+ G + C P +P+ G
Sbjct: 133 IERSSDFGKTWRVYQYLAADCTSTFPRV---RQGRPQSWQDVRCQSLP-QRPNARLNGGK 188
Query: 191 LAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYS--YAATD 248
+ ++ D G+ S +Q+ T++RV TR + P P S YA +
Sbjct: 189 VQLNLMDLVS-GIPATQSQKIQEVGEITNLRVNFTRLA----PVPQRGYHPPSAYYAVSQ 243
Query: 249 LQVGGRCKCNGHASRCL----------LDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQ 298
L++ G C C+GHA RC Q H +C C+H T GP+C RC PFY +RPW+
Sbjct: 244 LRLQGSCFCHGHADRCAPKPGASAGPSTAVQVHDVCVCQHNTAGPNCERCAPFYNNRPWR 303
Query: 299 RATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
A +++H C C CNGH+ C F+ ++ S GGVC NCR +T G++C C+ ++
Sbjct: 304 PAEGQDAHECQRCDCNGHSETCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYF 363
Query: 359 RDPGRALSDRRACRACDCHPVGAA-GKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
R+ S + C +C+C P GA G C+ TGQC CK+ V G C+ C PGF
Sbjct: 364 RNRRPGASIQETCISCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGF 417
Score = 75.1 bits (183), Expect = 2e-13
Identities = 59/213 (27%), Positives = 79/213 (37%), Gaps = 70/213 (32%)
Query: 254 RCKCNGHASRCLLD------TQGHL--ICD-CRHGTEGPDCGRCKPFYCDRPWQRATARE 304
RC CNGH+ C D +QG +CD CR TEG +C RC+ Y A+ +E
Sbjct: 315 RCDCNGHSETCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYFRNRRPGASIQE 374
Query: 305 SHACLACSCNGHA-------------------------------------------RRCR 321
+ C++C C+ RC
Sbjct: 375 T--CISCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGFTGLTYANPQGCHRCD 432
Query: 322 FNMELYRLSGRRS------GGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACD 375
N+ L RR G CL C N G C C ++ L+ + C C
Sbjct: 433 CNI----LGSRRDMPCDEESGRCL-CLPNVVGPKCDQCAPYHWK-----LASGQGCEPCA 482
Query: 376 CHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCA 408
C P + CNQ TGQCPC++G GL C+ A
Sbjct: 483 CDPHNSLSPQCNQFTGQCPCREGFGGLMCSAAA 515
Score = 70.5 bits (171), Expect = 4e-12
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 37/183 (20%)
Query: 254 RCKCNGHASRCLLDTQGHLICD-------CRHGTEGPDCGRCKPFYCDRPWQRATARESH 306
RC CN +L ++ + CD C GP C +C P++ W+ A+ +
Sbjct: 430 RCDCN------ILGSRRDMPCDEESGRCLCLPNVVGPKCDQCAPYH----WKLASGQ--- 476
Query: 307 ACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALS 366
C C+C+ H + + + +G+ CR G C + P R
Sbjct: 477 GCEPCACDPHNS---LSPQCNQFTGQ------CPCREGFGGLMCSAA--AIRQCPDRTYG 525
Query: 367 D-RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVA----PC 421
D CRACDC G G C++ +G+C C+ G+TG C++C G+ +R PV PC
Sbjct: 526 DVATGCRACDCDFRGTEGPGCDKASGRCLCRPGLTGPRCDQCQRGY-CNRYPVCVACHPC 584
Query: 422 VKT 424
+T
Sbjct: 585 FQT 587
Score = 57.4 bits (137), Expect = 4e-08
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 310 ACSCNGHARRC--RFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALS- 366
+C C+GHA RC + + + VC+ C+HNTAG +C C + P R
Sbjct: 249 SCFCHGHADRCAPKPGASAGPSTAVQVHDVCV-CQHNTAGPNCERCAPFYNNRPWRPAEG 307
Query: 367 -DRRACRACDCH---------------PVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
D C+ CDC+ GA G C+ C+D G C RC
Sbjct: 308 QDAHECQRCDCNGHSETCHFDPAVFAASQGAYGGVCDN------CRDHTEGKNCERCQLH 361
Query: 411 FQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCD 442
+ ++R P A +T I + V CD
Sbjct: 362 YFRNRRPGASIQETCISCECDPDGAVPGAPCD 393
>gi|189083719 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 196 bits (498), Expect = 5e-50
Identities = 127/414 (30%), Positives = 196/414 (47%), Gaps = 45/414 (10%)
Query: 31 HDEGGAPRG-CVPGLVNAALGRE--VLASSTCG--RPATRA------------CDASDPR 73
H + RG C P + + +GR + ASSTCG +P T CD+ P
Sbjct: 16 HAQQACSRGACYPPVGDLLVGRTRFLRASSTCGLTKPETYCTQYGEWQMKCCKCDSRQPH 75
Query: 74 RAHSPALLTSPGGTASPLCWRSESLPRAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVA 133
+S + + ++ P+ W P V+L + L + F+L V + F PA +
Sbjct: 76 NYYSHRV-ENVASSSGPMRWWQSQNDVNP--VSLQLDLDRRFQLQEVMMEFQGPMPAGML 132
Query: 134 LLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPAPLAQPDG---SGL 190
+ +S D G++W + ++ C + R+ G + C P +P+ G
Sbjct: 133 IERSSDFGKTWRVYQYLAADCTSTFPRV---RQGRPQSWQDVRCQSLP-QRPNARLNGGK 188
Query: 191 LAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYS--YAATD 248
+ ++ D G+ S +Q+ T++RV TR + P P S YA +
Sbjct: 189 VQLNLMDLVS-GIPATQSQKIQEVGEITNLRVNFTRLA----PVPQRGYHPPSAYYAVSQ 243
Query: 249 LQVGGRCKCNGHASRCL----------LDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQ 298
L++ G C C+GHA RC Q H +C C+H T GP+C RC PFY +RPW+
Sbjct: 244 LRLQGSCFCHGHADRCAPKPGASAGPSTAVQVHDVCVCQHNTAGPNCERCAPFYNNRPWR 303
Query: 299 RATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
A +++H C C CNGH+ C F+ ++ S GGVC NCR +T G++C C+ ++
Sbjct: 304 PAEGQDAHECQRCDCNGHSETCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYF 363
Query: 359 RDPGRALSDRRACRACDCHPVGAA-GKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
R+ S + C +C+C P GA G C+ TGQC CK+ V G C+ C PGF
Sbjct: 364 RNRRPGASIQETCISCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGF 417
Score = 75.1 bits (183), Expect = 2e-13
Identities = 59/213 (27%), Positives = 79/213 (37%), Gaps = 70/213 (32%)
Query: 254 RCKCNGHASRCLLD------TQGHL--ICD-CRHGTEGPDCGRCKPFYCDRPWQRATARE 304
RC CNGH+ C D +QG +CD CR TEG +C RC+ Y A+ +E
Sbjct: 315 RCDCNGHSETCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYFRNRRPGASIQE 374
Query: 305 SHACLACSCNGHA-------------------------------------------RRCR 321
+ C++C C+ RC
Sbjct: 375 T--CISCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGFTGLTYANPQGCHRCD 432
Query: 322 FNMELYRLSGRRS------GGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACD 375
N+ L RR G CL C N G C C ++ L+ + C C
Sbjct: 433 CNI----LGSRRDMPCDEESGRCL-CLPNVVGPKCDQCAPYHWK-----LASGQGCEPCA 482
Query: 376 CHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCA 408
C P + CNQ TGQCPC++G GL C+ A
Sbjct: 483 CDPHNSLSPQCNQFTGQCPCREGFGGLMCSAAA 515
Score = 70.5 bits (171), Expect = 4e-12
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 37/183 (20%)
Query: 254 RCKCNGHASRCLLDTQGHLICD-------CRHGTEGPDCGRCKPFYCDRPWQRATARESH 306
RC CN +L ++ + CD C GP C +C P++ W+ A+ +
Sbjct: 430 RCDCN------ILGSRRDMPCDEESGRCLCLPNVVGPKCDQCAPYH----WKLASGQ--- 476
Query: 307 ACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALS 366
C C+C+ H + + + +G+ CR G C + P R
Sbjct: 477 GCEPCACDPHNS---LSPQCNQFTGQ------CPCREGFGGLMCSAA--AIRQCPDRTYG 525
Query: 367 D-RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVA----PC 421
D CRACDC G G C++ +G+C C+ G+TG C++C G+ +R PV PC
Sbjct: 526 DVATGCRACDCDFRGTEGPGCDKASGRCLCRPGLTGPRCDQCQRGY-CNRYPVCVACHPC 584
Query: 422 VKT 424
+T
Sbjct: 585 FQT 587
Score = 57.4 bits (137), Expect = 4e-08
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 26/152 (17%)
Query: 310 ACSCNGHARRC--RFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALS- 366
+C C+GHA RC + + + VC+ C+HNTAG +C C + P R
Sbjct: 249 SCFCHGHADRCAPKPGASAGPSTAVQVHDVCV-CQHNTAGPNCERCAPFYNNRPWRPAEG 307
Query: 367 -DRRACRACDCH---------------PVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
D C+ CDC+ GA G C+ C+D G C RC
Sbjct: 308 QDAHECQRCDCNGHSETCHFDPAVFAASQGAYGGVCDN------CRDHTEGKNCERCQLH 361
Query: 411 FQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCD 442
+ ++R P A +T I + V CD
Sbjct: 362 YFRNRRPGASIQETCISCECDPDGAVPGAPCD 393
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 195 bits (496), Expect = 8e-50
Identities = 132/419 (31%), Positives = 198/419 (47%), Gaps = 48/419 (11%)
Query: 67 CDASDPRRAHSPALLTSPGGTASPLCWRSESLPRAPL--NVTLTVPLGKAFELVFVSLRF 124
C++ DPR+AH P G S W+S L V LT+ LG+ F + ++ ++F
Sbjct: 105 CNSEDPRKAH-PVTNAIDG---SERWWQSPPLSSGTQYNRVNLTLDLGQLFHVAYILIKF 160
Query: 125 CSAP-PASVALLKSQDHGRSWAPLGFFSSH---CDLDYGRLPAPANGPAGPGPEALCFPA 180
++P P L +S D G +++P +F+ C ++GR AN + LC
Sbjct: 161 ANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGR---EANMAVTRDDDVLCVTE 217
Query: 181 -PLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPST------AGDP 233
P +G + S+ + P + S L+++ AT++R+ R +T +
Sbjct: 218 YSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQ 277
Query: 234 RDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLDTQGHLI-CDCRHGTEGPDCGRCKPFY 292
RD Y Y+ D+ +GG+C CNGHA C ++ L C+C+H T G C RC Y
Sbjct: 278 RDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCECQHHTCGETCDRCCTGY 337
Query: 293 CDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR-------RSGGVCLNCRHNT 345
R W+ A +SH C AC+C+GHA C ++ ++ R GGVC+NC+HNT
Sbjct: 338 NQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNTQGIYAGGGVCINCQHNT 397
Query: 346 AGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCN 405
AG +C C +G+YR G + C C C P A G C Q +G+C CK G C
Sbjct: 398 AGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADG--CEQGSGRCHCKPNFHGDNCE 455
Query: 406 RCAPGFQQ----SRSPVAPCVKTP---------IPGPTEDSSPVQPQDCDSH----CKP 447
+CA G+ R P+ P V TP I G + V P+ CD+H C+P
Sbjct: 456 KCAIGYYNFPFCLRIPIFP-VSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRP 513
Score = 103 bits (257), Expect = 4e-22
Identities = 67/192 (34%), Positives = 85/192 (44%), Gaps = 41/192 (21%)
Query: 273 ICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR 332
IC C G C C P Y T R C+ C+CNGH+ +C+
Sbjct: 1653 ICACPPAYAGDSCQGCSPGYYRDHKGLYTGR----CVPCNCNGHSNQCQ----------- 1697
Query: 333 RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVG--AAGKTCNQTT 390
G+C+NC+HNTAG HC C+EG+Y G A+ +CRAC C A G N
Sbjct: 1698 DGSGICVNCQHNTAGEHCERCQEGYY---GNAV--HGSCRACPCPHTNSFATGCVVNGGD 1752
Query: 391 GQCPCKDGVTGLTCNRCAPGF----QQSRSPVAPCVKT---------PIPG-----PTED 432
+C CK G TG C RCAPG+ Q+ PC P+ G +D
Sbjct: 1753 VRCSCKAGYTGTQCERCAPGYFGNPQKFGGSCQPCSCNSNGQLGSCHPLTGDCINQEPKD 1812
Query: 433 SSPVQP-QDCDS 443
SSP + DCDS
Sbjct: 1813 SSPAEECDDCDS 1824
Score = 76.3 bits (186), Expect = 7e-14
Identities = 53/163 (32%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 255 CKCNG-HASRCLLDTQGHLICDCRHGTEGPDCGRCK------PFYCDRPWQRATARESHA 307
C C+ HA C QG C C+ G +C +C PF P + S
Sbjct: 426 CSCDPEHADGC---EQGSGRCHCKPNFHGDNCEKCAIGYYNFPFCLRIPIFPVSTPSSED 482
Query: 308 CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSD 367
+A G + C N+E + G CL CR G C CR GFY P
Sbjct: 483 PVA----GDIKGCDCNLEGVLPEICDAHGRCL-CRPGVEGPRCDTCRSGFYSFP------ 531
Query: 368 RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
C+AC C +G+ C+ TGQC C+ GVTG C+RC G
Sbjct: 532 --ICQACWCSALGSYQMPCSSVTGQCECRPGVTGQRCDRCLSG 572
Score = 66.2 bits (160), Expect = 8e-11
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 257 CNGHASRCLLDTQGHL-----ICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLAC 311
C G +S C D G + C C+ EGP C RCK Y W S C C
Sbjct: 579 CQGSSSAC--DPAGTINSNLGYCQCKLHVEGPTCSRCKLLY----WNLDKENPS-GCSEC 631
Query: 312 SCNGHARRCRFNMELYRLSG----RRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSD 367
C+ + +SG R+ G C +C+ + G C C +G++ S+
Sbjct: 632 KCH----------KAGTVSGTGECRQGDGDC-HCKSHVGGDSCDTCEDGYF---ALEKSN 677
Query: 368 RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNR 406
C+ C C GA C+ +G C C++ V G C R
Sbjct: 678 YFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQR 716
Score = 66.2 bits (160), Expect = 8e-11
Identities = 55/198 (27%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 217 ATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRC---KCNGHASRCLLDTQGHLI 273
A V + P+ AGD + P Y GRC CNGH+++C G I
Sbjct: 1648 ALAVEICACPPAYAGD--SCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQC---QDGSGI 1702
Query: 274 C-DCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR 332
C +C+H T G C RC+ Y + A AC N A C N
Sbjct: 1703 CVNCQHNTAGEHCERCQEGY----YGNAVHGSCRACPCPHTNSFATGCVVN--------- 1749
Query: 333 RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQ 392
G V +C+ G C C G++ +P + +C+ C C+ G G +C+ TG
Sbjct: 1750 -GGDVRCSCKAGYTGTQCERCAPGYFGNPQKF---GGSCQPCSCNSNGQLG-SCHPLTGD 1804
Query: 393 C---PCKDGVTGLTCNRC 407
C KD C+ C
Sbjct: 1805 CINQEPKDSSPAEECDDC 1822
Score = 63.2 bits (152), Expect = 6e-10
Identities = 51/176 (28%), Positives = 66/176 (37%), Gaps = 33/176 (18%)
Query: 252 GGRCKC--NGHASRCLLDTQGHL------ICDCRHGTEGPDCGRCK-PFYCDRPWQRATA 302
GG+C C N +C GH C C G+C+ P RP +
Sbjct: 1282 GGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRP--QCEV 1339
Query: 303 RESHA--------CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCR 354
E+H+ C C+C+ R +E R G C C+ GR C C
Sbjct: 1340 CETHSFSFHPMAGCEGCNCSR-----RGTIEAAMPECDRDSGQC-RCKPRITGRQCDRCA 1393
Query: 355 EGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
GFYR P C C+C+ G C+ TG C CK+ V G CN C G
Sbjct: 1394 SGFYRFP--------ECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREG 1441
Score = 55.5 bits (132), Expect = 1e-07
Identities = 54/186 (29%), Positives = 66/186 (35%), Gaps = 32/186 (17%)
Query: 248 DLQVGGRCKCNGHASRCLLDTQGHLICDCRH-GTEGPDCGR------CKPFYCDRPWQR- 299
D Q R N S +G L C+C G GP C C+P R R
Sbjct: 1240 DPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRC 1299
Query: 300 ATARESHA-CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
AT C CSC R C G C C T C C +
Sbjct: 1300 ATGHYGFPRCKPCSCG--RRLCE-----------EMTGQC-RCPPRTVRPQCEVCETHSF 1345
Query: 359 RDPGRALSDRRACRACDCHPVG---AAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSR 415
+ C C+C G AA C++ +GQC CK +TG C+RCA GF +
Sbjct: 1346 -----SFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRCKPRITGRQCDRCASGFYRFP 1400
Query: 416 SPVAPC 421
V PC
Sbjct: 1401 ECV-PC 1405
Score = 54.7 bits (130), Expect = 2e-07
Identities = 51/218 (23%), Positives = 70/218 (32%), Gaps = 64/218 (29%)
Query: 239 VVPYSYAATDLQVGGRCK-CNGHASRCLLDT-QGHLICDCRHGTEGPDCGRCKPFYCDRP 296
+ P S +++ V G K C+ + L + H C CR G EGP C C+ + P
Sbjct: 472 IFPVSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRPGVEGPRCDTCRSGFYSFP 531
Query: 297 WQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREG 356
C AC C+ + Y++ G C CR G+ C C G
Sbjct: 532 ----------ICQACWCSA--------LGSYQMPCSSVTGQC-ECRPGVTGQRCDRCLSG 572
Query: 357 FYR-----------DPGRALSDR------------------------------RACRACD 375
Y DP ++ C C
Sbjct: 573 AYDFPHCQGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECK 632
Query: 376 CHPVGAAGKT--CNQTTGQCPCKDGVTGLTCNRCAPGF 411
CH G T C Q G C CK V G +C+ C G+
Sbjct: 633 CHKAGTVSGTGECRQGDGDCHCKSHVGGDSCDTCEDGY 670
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 36/113 (31%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C+ G C RC + P C+ C+CN G
Sbjct: 1378 CRCKPRITGRQCDRCASGFYRFP----------ECVPCNCNR--------------DGTE 1413
Query: 334 SG------GVCLNCRHNTAGRHCHYCREG-FYRDPGRALSDRRACRACDCHPV 379
G G CL C+ N G C+ CREG F+ DP ++ + C +C C V
Sbjct: 1414 PGVCDPGTGACL-CKENVEGTECNVCREGSFHLDP----ANLKGCTSCFCFGV 1461
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 195 bits (496), Expect = 8e-50
Identities = 132/419 (31%), Positives = 198/419 (47%), Gaps = 48/419 (11%)
Query: 67 CDASDPRRAHSPALLTSPGGTASPLCWRSESLPRAPL--NVTLTVPLGKAFELVFVSLRF 124
C++ DPR+AH P G S W+S L V LT+ LG+ F + ++ ++F
Sbjct: 105 CNSEDPRKAH-PVTNAIDG---SERWWQSPPLSSGTQYNRVNLTLDLGQLFHVAYILIKF 160
Query: 125 CSAP-PASVALLKSQDHGRSWAPLGFFSSH---CDLDYGRLPAPANGPAGPGPEALCFPA 180
++P P L +S D G +++P +F+ C ++GR AN + LC
Sbjct: 161 ANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGR---EANMAVTRDDDVLCVTE 217
Query: 181 -PLAQPDGSGLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPST------AGDP 233
P +G + S+ + P + S L+++ AT++R+ R +T +
Sbjct: 218 YSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQ 277
Query: 234 RDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLDTQGHLI-CDCRHGTEGPDCGRCKPFY 292
RD Y Y+ D+ +GG+C CNGHA C ++ L C+C+H T G C RC Y
Sbjct: 278 RDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCECQHHTCGETCDRCCTGY 337
Query: 293 CDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR-------RSGGVCLNCRHNT 345
R W+ A +SH C AC+C+GHA C ++ ++ R GGVC+NC+HNT
Sbjct: 338 NQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNTQGIYAGGGVCINCQHNT 397
Query: 346 AGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCN 405
AG +C C +G+YR G + C C C P A G C Q +G+C CK G C
Sbjct: 398 AGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADG--CEQGSGRCHCKPNFHGDNCE 455
Query: 406 RCAPGFQQ----SRSPVAPCVKTP---------IPGPTEDSSPVQPQDCDSH----CKP 447
+CA G+ R P+ P V TP I G + V P+ CD+H C+P
Sbjct: 456 KCAIGYYNFPFCLRIPIFP-VSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRP 513
Score = 103 bits (257), Expect = 4e-22
Identities = 67/192 (34%), Positives = 85/192 (44%), Gaps = 41/192 (21%)
Query: 273 ICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR 332
IC C G C C P Y T R C+ C+CNGH+ +C+
Sbjct: 1653 ICACPPAYAGDSCQGCSPGYYRDHKGLYTGR----CVPCNCNGHSNQCQ----------- 1697
Query: 333 RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVG--AAGKTCNQTT 390
G+C+NC+HNTAG HC C+EG+Y G A+ +CRAC C A G N
Sbjct: 1698 DGSGICVNCQHNTAGEHCERCQEGYY---GNAV--HGSCRACPCPHTNSFATGCVVNGGD 1752
Query: 391 GQCPCKDGVTGLTCNRCAPGF----QQSRSPVAPCVKT---------PIPG-----PTED 432
+C CK G TG C RCAPG+ Q+ PC P+ G +D
Sbjct: 1753 VRCSCKAGYTGTQCERCAPGYFGNPQKFGGSCQPCSCNSNGQLGSCHPLTGDCINQEPKD 1812
Query: 433 SSPVQP-QDCDS 443
SSP + DCDS
Sbjct: 1813 SSPAEECDDCDS 1824
Score = 76.3 bits (186), Expect = 7e-14
Identities = 53/163 (32%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 255 CKCNG-HASRCLLDTQGHLICDCRHGTEGPDCGRCK------PFYCDRPWQRATARESHA 307
C C+ HA C QG C C+ G +C +C PF P + S
Sbjct: 426 CSCDPEHADGC---EQGSGRCHCKPNFHGDNCEKCAIGYYNFPFCLRIPIFPVSTPSSED 482
Query: 308 CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSD 367
+A G + C N+E + G CL CR G C CR GFY P
Sbjct: 483 PVA----GDIKGCDCNLEGVLPEICDAHGRCL-CRPGVEGPRCDTCRSGFYSFP------ 531
Query: 368 RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
C+AC C +G+ C+ TGQC C+ GVTG C+RC G
Sbjct: 532 --ICQACWCSALGSYQMPCSSVTGQCECRPGVTGQRCDRCLSG 572
Score = 66.2 bits (160), Expect = 8e-11
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 257 CNGHASRCLLDTQGHL-----ICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLAC 311
C G +S C D G + C C+ EGP C RCK Y W S C C
Sbjct: 579 CQGSSSAC--DPAGTINSNLGYCQCKLHVEGPTCSRCKLLY----WNLDKENPS-GCSEC 631
Query: 312 SCNGHARRCRFNMELYRLSG----RRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSD 367
C+ + +SG R+ G C +C+ + G C C +G++ S+
Sbjct: 632 KCH----------KAGTVSGTGECRQGDGDC-HCKSHVGGDSCDTCEDGYF---ALEKSN 677
Query: 368 RRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNR 406
C+ C C GA C+ +G C C++ V G C R
Sbjct: 678 YFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQR 716
Score = 66.2 bits (160), Expect = 8e-11
Identities = 55/198 (27%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 217 ATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRC---KCNGHASRCLLDTQGHLI 273
A V + P+ AGD + P Y GRC CNGH+++C G I
Sbjct: 1648 ALAVEICACPPAYAGD--SCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQC---QDGSGI 1702
Query: 274 C-DCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR 332
C +C+H T G C RC+ Y + A AC N A C N
Sbjct: 1703 CVNCQHNTAGEHCERCQEGY----YGNAVHGSCRACPCPHTNSFATGCVVN--------- 1749
Query: 333 RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQ 392
G V +C+ G C C G++ +P + +C+ C C+ G G +C+ TG
Sbjct: 1750 -GGDVRCSCKAGYTGTQCERCAPGYFGNPQKF---GGSCQPCSCNSNGQLG-SCHPLTGD 1804
Query: 393 C---PCKDGVTGLTCNRC 407
C KD C+ C
Sbjct: 1805 CINQEPKDSSPAEECDDC 1822
Score = 63.2 bits (152), Expect = 6e-10
Identities = 51/176 (28%), Positives = 66/176 (37%), Gaps = 33/176 (18%)
Query: 252 GGRCKC--NGHASRCLLDTQGHL------ICDCRHGTEGPDCGRCK-PFYCDRPWQRATA 302
GG+C C N +C GH C C G+C+ P RP +
Sbjct: 1282 GGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRP--QCEV 1339
Query: 303 RESHA--------CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCR 354
E+H+ C C+C+ R +E R G C C+ GR C C
Sbjct: 1340 CETHSFSFHPMAGCEGCNCSR-----RGTIEAAMPECDRDSGQC-RCKPRITGRQCDRCA 1393
Query: 355 EGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG 410
GFYR P C C+C+ G C+ TG C CK+ V G CN C G
Sbjct: 1394 SGFYRFP--------ECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREG 1441
Score = 55.5 bits (132), Expect = 1e-07
Identities = 54/186 (29%), Positives = 66/186 (35%), Gaps = 32/186 (17%)
Query: 248 DLQVGGRCKCNGHASRCLLDTQGHLICDCRH-GTEGPDCGR------CKPFYCDRPWQR- 299
D Q R N S +G L C+C G GP C C+P R R
Sbjct: 1240 DPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRC 1299
Query: 300 ATARESHA-CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
AT C CSC R C G C C T C C +
Sbjct: 1300 ATGHYGFPRCKPCSCG--RRLCE-----------EMTGQC-RCPPRTVRPQCEVCETHSF 1345
Query: 359 RDPGRALSDRRACRACDCHPVG---AAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSR 415
+ C C+C G AA C++ +GQC CK +TG C+RCA GF +
Sbjct: 1346 -----SFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRCKPRITGRQCDRCASGFYRFP 1400
Query: 416 SPVAPC 421
V PC
Sbjct: 1401 ECV-PC 1405
Score = 54.7 bits (130), Expect = 2e-07
Identities = 51/218 (23%), Positives = 70/218 (32%), Gaps = 64/218 (29%)
Query: 239 VVPYSYAATDLQVGGRCK-CNGHASRCLLDT-QGHLICDCRHGTEGPDCGRCKPFYCDRP 296
+ P S +++ V G K C+ + L + H C CR G EGP C C+ + P
Sbjct: 472 IFPVSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRPGVEGPRCDTCRSGFYSFP 531
Query: 297 WQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREG 356
C AC C+ + Y++ G C CR G+ C C G
Sbjct: 532 ----------ICQACWCSA--------LGSYQMPCSSVTGQC-ECRPGVTGQRCDRCLSG 572
Query: 357 FYR-----------DPGRALSDR------------------------------RACRACD 375
Y DP ++ C C
Sbjct: 573 AYDFPHCQGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECK 632
Query: 376 CHPVGAAGKT--CNQTTGQCPCKDGVTGLTCNRCAPGF 411
CH G T C Q G C CK V G +C+ C G+
Sbjct: 633 CHKAGTVSGTGECRQGDGDCHCKSHVGGDSCDTCEDGY 670
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 36/113 (31%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C+ G C RC + P C+ C+CN G
Sbjct: 1378 CRCKPRITGRQCDRCASGFYRFP----------ECVPCNCNR--------------DGTE 1413
Query: 334 SG------GVCLNCRHNTAGRHCHYCREG-FYRDPGRALSDRRACRACDCHPV 379
G G CL C+ N G C+ CREG F+ DP ++ + C +C C V
Sbjct: 1414 PGVCDPGTGACL-CKENVEGTECNVCREGSFHLDP----ANLKGCTSCFCFGV 1461
>gi|190014607 netrin G2 [Homo sapiens]
Length = 530
Score = 194 bits (494), Expect = 1e-49
Identities = 123/393 (31%), Positives = 186/393 (47%), Gaps = 50/393 (12%)
Query: 58 TCGRPATR------------ACDASDPRRAHSPALLTSPGGTASPLCWRSESLPR--APL 103
TCG P R CDAS+P AH P L+ W+S + R +PL
Sbjct: 60 TCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEGLATYWQSITWSRYPSPL 119
Query: 104 NVTLTVPLGKAFELVF-VSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLP 162
+T+ K EL V + F P + L KS D+GR+W P F++ C +G
Sbjct: 120 EANITLSWNKTVELTDDVVMTFEYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSA 179
Query: 163 APANGPAGPGPEALCFPAPLAQPDGSGL---LAFSMQDS----SPPGL--------DLDS 207
A + + ++ GS + F ++D + P L L+S
Sbjct: 180 RRARDMSSSSAHRVLCTEEYSRWAGSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLES 239
Query: 208 SPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLD 267
+ L+++ T TD+R+ L RP+ G E + Y YA ++++V GRCKCN HA+ C +
Sbjct: 240 AKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSM- 298
Query: 268 TQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRAT-----ARESHACLA------CSCNGH 316
+G L C+C H T GPDCG+CK + R W+ + +AC C C GH
Sbjct: 299 REGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACATAGSFGNCECYGH 358
Query: 317 ARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDC 376
+ RC + L ++ C++C+HNT G+HC +CR G+YR+ L D C C+C
Sbjct: 359 SNRCSYIDFLNVVT-------CVSCKHNTRGQHCQHCRLGYYRNGSAELDDENVCIECNC 411
Query: 377 HPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAP 409
+ +G+ CN+ TG C C++G G C+ C P
Sbjct: 412 NQIGSVHDRCNE-TGFCECREGAAGPKCDDCLP 443
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 193 bits (490), Expect = 4e-49
Identities = 142/482 (29%), Positives = 205/482 (42%), Gaps = 77/482 (15%)
Query: 10 LTAGTLFAALSPGPPAP----------ADPCHDEGGAPRGCVPGLVNAALGREVLASSTC 59
L AG+ P PAP A +E G P N A G + AS+TC
Sbjct: 5 LCAGSALCVRGPRGPAPLLLVGLALLGAARAREEAGGGFSLHPPYFNLAEGARIAASATC 64
Query: 60 GRPATRA----------------------------------CDASDPRRAHSPALLTSPG 85
G A C A++ +AH PA G
Sbjct: 65 GEEAPARGSPRPTEDLYCKLVGGPVAGGDPNQTIRGQYCDICTAANSNKAH-PASNAIDG 123
Query: 86 GTASPLCWRSESLPRAPL--NVTLTVPLGKAFELVFVSLRFCSAP-PASVALLKSQDHGR 142
+ W+S L R V +T+ LG+ F + +V ++F ++P P L +S D GR
Sbjct: 124 ---TERWWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIKFANSPRPDLWVLERSMDFGR 180
Query: 143 SWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPA-PLAQPDGSGLLAFSMQDSSPP 201
++ P FF+S R A+C P +G + S+ + P
Sbjct: 181 TYQPWQFFASSKRDCLERFGPQTLERITRDDAAICTTEYSRIVPLENGEIVVSLVNGRPG 240
Query: 202 GLDLDSSPVLQDWVTATDVRVVLTRPST------AGDPRDMEAVVPYSYAATDLQVGGRC 255
++ SP+L+++ AT+VR+ R +T RD Y Y+ D+ +GGRC
Sbjct: 241 AMNFSYSPLLREFTKATNVRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRC 300
Query: 256 KCNGHASRCLLDTQG-----HLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLA 310
C+GHA C D + L C C+H T G C RC P + +PW+ ATA ++ C +
Sbjct: 301 VCHGHADAC--DAKDPTDPFRLQCTCQHNTCGGTCDRCCPGFNQQPWKPATANSANECQS 358
Query: 311 CSCNGHARRCRFNMELYRLSGRRS-------GGVCLNCRHNTAGRHCHYCREGFYRDPGR 363
C+C GHA C ++ E+ R +S GGVC++C+H+T G +C C GFYR P
Sbjct: 359 CNCYGHATDCYYDPEVDRRRASQSLDGTYQGGGVCIDCQHHTTGVNCERCLPGFYRSPNH 418
Query: 364 ALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVK 423
L CR C+C G TC TG+C C+ +G C+ CA GF S C
Sbjct: 419 PLDSPHVCRRCNCESDFTDG-TCEDLTGRCYCRPNFSGERCDVCAEGFTGFPS----CYP 473
Query: 424 TP 425
TP
Sbjct: 474 TP 475
Score = 90.5 bits (223), Expect = 4e-18
Identities = 61/192 (31%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 258 NGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHA 317
N A C+L G C C+ G G C RC P + P + +C C C+G+
Sbjct: 1922 NNFAEGCVL-RGGRTQCLCKPGYAGASCERCAPGFFGNPLVLGS-----SCQPCDCSGNG 1975
Query: 318 RRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCH 377
+ L+ G C C +T G C C GFY G AL C CDC
Sbjct: 1976 DPNLLFSDCDPLT-----GACRGCLRHTTGPRCEICAPGFY---GNALLPGN-CTRCDCT 2026
Query: 378 PVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF--QQSRSPVAPCVKTPIPGPTEDSSP 435
P G + C+ +G C CK GVTG C+RC G PC GP + S
Sbjct: 2027 PCGT--EACDPHSGHCLCKAGVTGRRCDRCQEGHFGFDGCGGCRPCA----CGPAAEGSE 2080
Query: 436 VQPQDCDSHCKP 447
PQ HC+P
Sbjct: 2081 CHPQSGQCHCRP 2092
Score = 84.0 bits (206), Expect = 4e-16
Identities = 64/193 (33%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 273 ICDCRHGTEGPDCGRCKP-FYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSG 331
+C C G C C P FY D C+ C C+GH+ RC L G
Sbjct: 1830 LCLCPASYRGDSCQECAPGFYRD-----VKGLFLGRCVPCQCHGHSDRC--------LPG 1876
Query: 332 RRSGGVCLNCRHNTAGRHCHYCREGFY--RDPGRALSDRRACRACDCH---PVGAAGKTC 386
GVC++C+HNT G HC C+ GF RD A C +C C P + C
Sbjct: 1877 ---SGVCVDCQHNTEGAHCERCQAGFVSSRDDPSA-----PCVSCPCPLSVPSNNFAEGC 1928
Query: 387 NQTTG--QCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSH 444
G QC CK G G +C RCAPGF + P V P + S P S
Sbjct: 1929 VLRGGRTQCLCKPGYAGASCERCAPGFFGN-----PLVLGSSCQPCDCSGNGDPNLLFSD 1983
Query: 445 CKPARGSYRISLK 457
C P G+ R L+
Sbjct: 1984 CDPLTGACRGCLR 1996
Score = 81.6 bits (200), Expect = 2e-15
Identities = 62/203 (30%), Positives = 78/203 (38%), Gaps = 44/203 (21%)
Query: 252 GGRCKCNGHA-----SRCLLDTQGH----------LICD-------CRHGTEGPDCGRCK 289
GG+C C+ H SRC G +CD C T PDC C+
Sbjct: 1454 GGQCPCHAHVIGRDCSRCATGYWGFPNCRPCDCGARLCDELTGQCICPPRTIPPDCLLCQ 1513
Query: 290 PFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRH 349
P Q C C+C+G + EL + G C CR N GR
Sbjct: 1514 P-------QTFGCHPLVGCEECNCSGPGIQ-----ELTDPTCDTDSGQC-KCRPNVTGRR 1560
Query: 350 CHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAP 409
C C GF+ P CR CDCH G A C+ TGQC CK+ V G C++C+
Sbjct: 1561 CDTCSPGFHGYP--------RCRPCDCHEAGTAPGVCDPLTGQCYCKENVQGPKCDQCSL 1612
Query: 410 G-FQQSRSPVAPCVKTPIPGPTE 431
G F + C + G TE
Sbjct: 1613 GTFSLDAANPKGCTRCFCFGATE 1635
Score = 79.7 bits (195), Expect = 7e-15
Identities = 57/170 (33%), Positives = 67/170 (39%), Gaps = 36/170 (21%)
Query: 255 CKCNGHA---SRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLAC 311
C+C+ RC DT C CR G EG C RC P Y P C C
Sbjct: 541 CQCSSPGVADDRCDPDTGQ---CRCRVGFEGATCDRCAPGYFHFP----------LCQLC 587
Query: 312 SCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRAC 371
C+ G G CL C+ AG HC CR G++ P C
Sbjct: 588 GCSPAGTLPE---------GCDEAGRCL-CQPEFAGPHCDRCRPGYHGFPN--------C 629
Query: 372 RACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPC 421
+AC C P GA + C G C C+ G TG C C+PGF S V PC
Sbjct: 630 QACTCDPRGALDQLCG-AGGLCRCRPGYTGTACQECSPGFHGFPSCV-PC 677
Score = 78.6 bits (192), Expect = 1e-14
Identities = 71/275 (25%), Positives = 89/275 (32%), Gaps = 87/275 (31%)
Query: 255 CKCNGHASRCLLDT---------------QGHLIC-DCRHGTEGPDCGRCKP-FY----- 292
C C GHA+ C D QG +C DC+H T G +C RC P FY
Sbjct: 359 CNCYGHATDCYYDPEVDRRRASQSLDGTYQGGGVCIDCQHHTTGVNCERCLPGFYRSPNH 418
Query: 293 ------------CDRPWQRATARESHACLACSCNGHARRCRFNMELYR------------ 328
C+ + T + C N RC E +
Sbjct: 419 PLDSPHVCRRCNCESDFTDGTCEDLTGRCYCRPNFSGERCDVCAEGFTGFPSCYPTPSSS 478
Query: 329 -------------------LSGRRSG--------GVCLNCRHNTAGRHCHYCREGFYRDP 361
+G + G CL C+ N G HC C GFY P
Sbjct: 479 NDTREQVLPAGQIVNCDCSAAGTQGNACRKDPRVGRCL-CKPNFQGTHCELCAPGFY-GP 536
Query: 362 GRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQ----SRSP 417
G C+ C C G A C+ TGQC C+ G G TC+RCAPG+
Sbjct: 537 G--------CQPCQCSSPGVADDRCDPDTGQCRCRVGFEGATCDRCAPGYFHFPLCQLCG 588
Query: 418 VAPCVKTPIPGPTEDSSPVQPQDCDSHCKPARGSY 452
+P P QP+ HC R Y
Sbjct: 589 CSPAGTLPEGCDEAGRCLCQPEFAGPHCDRCRPGY 623
Score = 74.7 bits (182), Expect = 2e-13
Identities = 45/137 (32%), Positives = 59/137 (43%), Gaps = 28/137 (20%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C+ GP C RC+P Y P C AC+C+ L +L G
Sbjct: 605 CLCQPEFAGPHCDRCRPGYHGFP----------NCQACTCDPRGA-------LDQLCG-- 645
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQC 393
+GG+C CR G C C GF+ P +C C C G+ C+ +GQC
Sbjct: 646 AGGLC-RCRPGYTGTACQECSPGFHGFP--------SCVPCHCSAEGSLHAACDPRSGQC 696
Query: 394 PCKDGVTGLTCNRCAPG 410
C+ VTGL C+ C PG
Sbjct: 697 SCRPRVTGLRCDTCVPG 713
Score = 73.2 bits (178), Expect = 6e-13
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN-----GHARRCRFNMELYR 328
C CR EGP C RCKP + W + + C CSC+ G C+
Sbjct: 744 CMCRAHVEGPSCDRCKPGF----WGLSPSNPE-GCTRCSCDLRGTLGGVAECQ------- 791
Query: 329 LSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQ 388
G C C+ + G+ C C++GF+ G +D CR+C C GA G++C
Sbjct: 792 ----PGTGQCF-CKPHVCGQACASCKDGFF---GLDQADYFGCRSCRCDIGGALGQSCEP 843
Query: 389 TTGQCPCKDGVTGLTCNRCA 408
TG C C+ G TC+ A
Sbjct: 844 RTGVCRCRPNTQGPTCSEPA 863
Score = 55.1 bits (131), Expect = 2e-07
Identities = 51/204 (25%), Positives = 67/204 (32%), Gaps = 52/204 (25%)
Query: 254 RCKCNGHA----SRCLLDTQGHL--------ICDCRHGTEGPDCGRCKPFYCDRPWQRAT 301
RC+ H C D +G L +C CR G G C C P + P
Sbjct: 618 RCRPGYHGFPNCQACTCDPRGALDQLCGAGGLCRCRPGYTGTACQECSPGFHGFPSCVPC 677
Query: 302 ARESHACLACSCNGHARRCRFNMELYRLSGRR--------------SGGVC--------- 338
+ L +C+ + +C R++G R G C
Sbjct: 678 HCSAEGSLHAACDPRSGQCSCRP---RVTGLRCDTCVPGAYNFPYCEAGSCHPAGLAPVD 734
Query: 339 ---------LNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKT--CN 387
CR + G C C+ GF+ G + S+ C C C G G C
Sbjct: 735 PALPEAQVPCMCRAHVEGPSCDRCKPGFW---GLSPSNPEGCTRCSCDLRGTLGGVAECQ 791
Query: 388 QTTGQCPCKDGVTGLTCNRCAPGF 411
TGQC CK V G C C GF
Sbjct: 792 PGTGQCFCKPHVCGQACASCKDGF 815
Score = 54.7 bits (130), Expect = 2e-07
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 357 FYRDPGRALS--DRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
F R+ +LS R C CH VGA G TC GQCPC V G C+RCA G+
Sbjct: 1419 FCRNAAASLSLFYNNGARPCGCHEVGATGPTCEPFGGQCPCHAHVIGRDCSRCATGY 1475
Score = 31.6 bits (70), Expect = 2.1
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 274 CDCRHGTEGPDCGRCK--PFYCDRPWQRATARESHACLACSCNGHARRCR 321
C C+ +GP C +C F D A C C C G RCR
Sbjct: 1596 CYCKENVQGPKCDQCSLGTFSLD-------AANPKGCTRCFCFGATERCR 1638
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 190 bits (483), Expect = 3e-48
Identities = 141/486 (29%), Positives = 219/486 (45%), Gaps = 76/486 (15%)
Query: 38 RGCVPGLVNAALGREVLASSTCGR--------------------PATRACD--ASDPRRA 75
RG P ++N A + ++TCG P R CD +++PR
Sbjct: 20 RGLFPAILNLASNAHISTNATCGEKGPEMFCKLVEHVPGRPVRNPQCRICDGNSANPRER 79
Query: 76 HSPALLTSPGGTASPLCWRSESLP--RAPLNVTLTVPLGKAFELVFVSLRFCSAPPASVA 133
H + + GT + W+S S+ R VT+T+ L + F++ +V ++ +AP
Sbjct: 80 HP--ISHAIDGTNN--WWQSPSIQNGREYHWVTITLDLRQVFQVAYVIIKAANAPRPGNW 135
Query: 134 LLKSQDHGRSWAPLGFFS---SHCDLDYGRLPAPANGPAGPGPEALC--FPAPLAQPDGS 188
+L+ G +++P +++ S C Y P E +C + + L P
Sbjct: 136 ILERSLDGTTFSPWQYYAVSDSECLSRYNITPRRGPPTYRADDEVICTSYYSRLV-PLEH 194
Query: 189 GLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAG---------DPRDMEAV 239
G + S+ + P DL SP L ++ +A +R+ L R T +P++++ +
Sbjct: 195 GEIHTSLINGRPSADDL--SPKLLEFTSARYIRLRLQRIRTLNADLMTLSHREPKELDPI 252
Query: 240 VP--YSYAATDLQVGGRCKCNGHASRCLLD-TQGHLICDCRHGTEGPDCGRCKPFYCDRP 296
V Y Y+ D+ VGG C C GHAS C D T L C C H T G C RC P Y +P
Sbjct: 253 VTRRYYYSIKDISVGGMCICYGHASSCPWDETTKKLQCQCEHNTCGESCNRCCPGYHQQP 312
Query: 297 WQRATARESHACLACSCNGHARRCRFNMELYR------LSGR-RSGGVCLNCRHNTAGRH 349
W+ T + C AC+C+ A+ C ++ + + +G+ R GGVC+NC NT G +
Sbjct: 313 WRPGTVSSGNTCEACNCHNKAKDCYYDESVAKQKKSLNTAGQFRGGGVCINCLQNTMGIN 372
Query: 350 CHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTC-----------NQTTGQCPCKDG 398
C C +G+YR + + CR C+C PVG+ C + GQCPCK+G
Sbjct: 373 CETCIDGYYRPHKVSPYEDEPCRPCNCDPVGSLSSVCIKDDLHSDLHNGKQPGQCPCKEG 432
Query: 399 VTGLTCNRCAPGFQQ-------SRSPVAPCVKTPIPGPTEDSSPVQPQDCDSHCKPARGS 451
TG C+RC G++ +PV P GP V+ + CD CKP G
Sbjct: 433 YTGEKCDRCQLGYKDYPTCVSCGCNPVGSASDEPCTGPCVCKENVEGKACD-RCKP--GF 489
Query: 452 YRISLK 457
Y + K
Sbjct: 490 YNLKEK 495
Score = 94.4 bits (233), Expect = 3e-19
Identities = 61/195 (31%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 258 NGHASRCLLDTQGHLICD-CRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGH 316
N + C L+ ++CD C G G C RC Y P +C+ C C+G+
Sbjct: 800 NNFSPTCHLNDGDEVVCDWCAPGYSGAWCERCADGYYGNP-----TVPGESCVPCDCSGN 854
Query: 317 ARRCRFNMELYRLSGRRSG--GVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
+G G CL C NT G HC C +GFY D A + CRAC
Sbjct: 855 VDPSE--------AGHCDSVTGECLKCLGNTDGAHCERCADGFYGDAVTA----KNCRAC 902
Query: 375 DCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQ--QSRSPVAPCVKTPIPGPTED 432
+CH G+ C+ TG C CK VTG C++C G+ S PC + G D
Sbjct: 903 ECHVKGSHSAVCHLETGLCDCKPNVTGQQCDQCLHGYYGLDSGHGCRPC-NCSVAGSVSD 961
Query: 433 SSPVQPQDCDSHCKP 447
+ Q HC P
Sbjct: 962 GCTDEGQ---CHCVP 973
Score = 80.5 bits (197), Expect = 4e-15
Identities = 55/189 (29%), Positives = 73/189 (38%), Gaps = 25/189 (13%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C+C G G C C Y ++ C C C+GHA C +
Sbjct: 709 CECPQGYTGTSCESCLSGY----YRVDGILFGGICQPCECHGHAAECNVH---------- 754
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQC 393
GVC+ C HNT G HC C GFY +P R C+ C C P+ A + T C
Sbjct: 755 --GVCIACAHNTTGVHCEQCLPGFYGEPSRGTPG--DCQPCAC-PLTIASNNFSPT---C 806
Query: 394 PCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSHCKPARGSYR 453
DG + C+ CAPG+ S + C PT P DC + P+ +
Sbjct: 807 HLNDG-DEVVCDWCAPGY--SGAWCERCADGYYGNPTVPGESCVPCDCSGNVDPSEAGHC 863
Query: 454 ISLKKFCKK 462
S+ C K
Sbjct: 864 DSVTGECLK 872
Score = 77.4 bits (189), Expect = 3e-14
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN 314
C CN H+ C D +C T G C C Y + + T S C C+C
Sbjct: 1403 CSCNNHSDTC--DPNTGKCLNCGDNTAGDHCDVCTSGY----YGKVTGSASD-CALCACP 1455
Query: 315 GHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
H+ F+ L G C C G+HC C +Y +P + +C+ C
Sbjct: 1456 -HSPPASFSPTCV-LEGDHDFR-CDACLLGYEGKHCERCSSSYYGNPQ---TPGGSCQKC 1509
Query: 375 DCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAP 409
DC+P G+ C++T+GQC C+ G +GL C+ C P
Sbjct: 1510 DCNPHGSVHGDCDRTSGQCVCRLGASGLRCDECEP 1544
Score = 59.7 bits (143), Expect = 7e-09
Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 28/149 (18%)
Query: 274 CDCRHGTEGPDCGRCKP-FYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGR 332
C C G G C RC FY A + +C C C C
Sbjct: 969 CHCVPGVAGKRCDRCAHGFY---------AYQDGSCTPCDCPHTQNTCD----------- 1008
Query: 333 RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQ 392
G C+ C +T G C C +G + C+AC+C VG+ C+ TG
Sbjct: 1009 PETGECV-CPPHTQGVKCEECEDGHWGYDAEV-----GCQACNCSLVGSTHHRCDVVTGH 1062
Query: 393 CPCKDGVTGLTCNRCAPGFQQSRSPVAPC 421
C CK G C++C+ G++ V PC
Sbjct: 1063 CQCKSKFGGRACDQCSLGYRDFPDCV-PC 1090
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/161 (28%), Positives = 54/161 (33%), Gaps = 47/161 (29%)
Query: 274 CDCRH--GTEGPDCGRCKPFYCDRPWQRATARESH----------ACLACSCN---GHAR 318
CDC H T P+ G C C Q E C AC+C+
Sbjct: 998 CDCPHTQNTCDPETGEC---VCPPHTQGVKCEECEDGHWGYDAEVGCQACNCSLVGSTHH 1054
Query: 319 RCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHP 378
RC G C C+ GR C C G+ P C CDC
Sbjct: 1055 RCDVVT-----------GHC-QCKSKFGGRACDQCSLGYRDFPD--------CVPCDCDL 1094
Query: 379 VGAAGKTCN---------QTTGQCPCKDGVTGLTCNRCAPG 410
G +G CN + TG CPCK+ V G CN C G
Sbjct: 1095 RGTSGDACNLEQGLCGCVEETGACPCKENVFGPQCNECREG 1135
Score = 37.7 bits (86), Expect = 0.029
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 393 CPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSH---CKPAR 449
C C G G +C CAPG+ + + P GP +P P C++H C P
Sbjct: 1362 CVCPPGTVGFSCQDCAPGYHRGKLPAG-----SDRGPRPLVAPCVPCSCNNHSDTCDPNT 1416
Query: 450 G 450
G
Sbjct: 1417 G 1417
Score = 35.8 bits (81), Expect = 0.11
Identities = 37/134 (27%), Positives = 50/134 (37%), Gaps = 22/134 (16%)
Query: 248 DLQVGGR-CKCNGHAS---RCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATAR 303
D +VG + C C+ S RC + T GH C C+ G C +C Y D P
Sbjct: 1036 DAEVGCQACNCSLVGSTHHRCDVVT-GH--CQCKSKFGGRACDQCSLGYRDFP------- 1085
Query: 304 ESHACLACSCNGHARRC-RFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPG 362
C+ C C+ N+E G C C+ N G C+ CREG +
Sbjct: 1086 ---DCVPCDCDLRGTSGDACNLEQGLCGCVEETGAC-PCKENVFGPQCNECREGTF---A 1138
Query: 363 RALSDRRACRACDC 376
+ C C C
Sbjct: 1139 LRADNPLGCSPCFC 1152
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 167 bits (424), Expect = 2e-41
Identities = 130/473 (27%), Positives = 204/473 (43%), Gaps = 72/473 (15%)
Query: 38 RGCVPGLVNAALGREVLASSTCGR--------------------PATRACD--ASDPRRA 75
RG P ++N A + ++TCG P R C+ +S+P +
Sbjct: 37 RGLFPAVLNLASNALITTNATCGEKGPEMYCKLVEHVPGQPVRNPQCRICNQNSSNPNQR 96
Query: 76 HSPALLTSPGGTASPLCWRSESLPRAPLN--VTLTVPLGKAFELVFVSLRFCSAP-PASV 132
H T W+S S+ VT+T+ L + F++ +V ++ ++P P +
Sbjct: 97 HPITNAIDGKNT----WWQSPSIKNGIEYHYVTITLDLQQVFQIAYVIVKAANSPRPGNW 152
Query: 133 ALLKSQD--HGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALC--FPAPLAQPDGS 188
L +S D + W + C Y P E +C F + + P +
Sbjct: 153 ILERSLDDVEYKPWQYHAVTDTECLTLYNIYPRTGPPSYAKDDEVICTSFYSKI-HPLEN 211
Query: 189 GLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAG---------DPRDMEAV 239
G + S+ + P D SP L ++ +A +R+ R T DPR+++ +
Sbjct: 212 GEIHISLINGRPSADD--PSPELLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREIDPI 269
Query: 240 VP--YSYAATDLQVGGRCKCNGHASRCLLDTQGHLI-CDCRHGTEGPDCGRCKPFYCDRP 296
V Y Y+ D+ VGG C C GHA C LD + C+C H T G C +C P + +P
Sbjct: 270 VTRRYYYSVKDISVGGMCICYGHARACPLDPATNKSRCECEHNTCGDSCDQCCPGFHQKP 329
Query: 297 WQRATARESHACLACSCNGHARRCRFNMELYR------LSGRR-SGGVCLNCRHNTAGRH 349
W+ T C AC+C+G A C ++ + R + G+ GGVC+NC NTAG +
Sbjct: 330 WRAGTFLTKTECEACNCHGKAEECYYDENVARRNLSLNIRGKYIGGGVCINCTQNTAGIN 389
Query: 350 CHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTC---------NQTTGQCPCKDGVT 400
C C +GF+R G + + R C+ C C P+G+ + C G C CK G
Sbjct: 390 CETCTDGFFRPKGVSPNYPRPCQPCHCDPIGSLNEVCVKDEKHARRGLAPGSCHCKTGFG 449
Query: 401 GLTCNRCAPGFQQ-------SRSPVAPCVKTPIPGPTEDSSPVQPQDCDSHCK 446
G++C+RCA G+ + S + + P GP V+ DC S CK
Sbjct: 450 GVSCDRCARGYTGYPDCKACNCSGLGSKNEDPCFGPCICKENVEGGDC-SRCK 501
Score = 88.2 bits (217), Expect = 2e-17
Identities = 54/169 (31%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 258 NGHASRCLLDTQGHLICD-CRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGH 316
N + C LD LICD C G GP C RC Y +P + +C C CN
Sbjct: 816 NNFSPTCHLDRSLGLICDGCPVGYTGPRCERCAEGYFGQP-----SVPGGSCQPCQCND- 869
Query: 317 ARRCRFNMELYRLSGRRSG--GVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
N++ + + G G CL C+ T GR+C C +G++ D D + C+ C
Sbjct: 870 ------NLD-FSIPGSCDSLSGSCLICKPGTTGRYCELCADGYFGDA----VDAKNCQPC 918
Query: 375 DCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF--QQSRSPVAPC 421
C+ G+ + C+ TGQC C+ V G C++C G QS PC
Sbjct: 919 RCNAGGSFSEVCHSQTGQCECRANVQGQRCDKCKAGTFGLQSARGCVPC 967
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/184 (29%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 237 EAVVPYSYAATDLQVGGR-----------CKCNGHASRCLLDTQGHLICDCRHGTEGPDC 285
EA +P Y Q GGR C+CNGH+S C D + + +C+H T G C
Sbjct: 1392 EACLPGFYRLRS-QPGGRTPGPTLGTCVPCQCNGHSSLC--DPETSICQNCQHHTAGDFC 1448
Query: 286 GRCKPFYCDRPWQRATARESHAC-LACSCNGHARRC-RFNMELYRLSGRRSGGVCLNCRH 343
RC Y + AC L S N + C ++ YR C C
Sbjct: 1449 ERCALGYYGIVKGLPNDCQQCACPLISSSNNFSPSCVAEGLDDYR---------CTACPR 1499
Query: 344 NTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLT 403
G++C C G+ PG + +C+ C+C P G+ C+ TG C C+ G TG
Sbjct: 1500 GYEGQYCERCAPGYTGSPG---NPGGSCQECECDPYGSLPVPCDPVTGFCTCRPGATGRK 1556
Query: 404 CNRC 407
C+ C
Sbjct: 1557 CDGC 1560
Score = 69.7 bits (169), Expect = 7e-12
Identities = 45/151 (29%), Positives = 57/151 (37%), Gaps = 24/151 (15%)
Query: 274 CDCRHGTEGPDCGRCKP-FYCDR--PWQRATARESHACLACSCNGHARRCRFNMELYRLS 330
CDC G G C C P FY R P R C+ C CNGH+ C
Sbjct: 1380 CDCPLGYSGLSCEACLPGFYRLRSQPGGRTPGPTLGTCVPCQCNGHSSLCD--------- 1430
Query: 331 GRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTT 390
+C NC+H+TAG C C G+Y G C+ C C + ++
Sbjct: 1431 --PETSICQNCQHHTAGDFCERCALGYY---GIVKGLPNDCQQCACPLISSSNNFSPSCV 1485
Query: 391 GQ-------CPCKDGVTGLTCNRCAPGFQQS 414
+ C G G C RCAPG+ S
Sbjct: 1486 AEGLDDYRCTACPRGYEGQYCERCAPGYTGS 1516
Score = 68.2 bits (165), Expect = 2e-11
Identities = 49/188 (26%), Positives = 71/188 (37%), Gaps = 30/188 (15%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN 314
C CN S+ D + C C+ G G C RC Y + + C AC C+
Sbjct: 967 CNCNSFGSKSF-DCEESGQCWCQPGVTGKKCDRCAHGYFNF--------QEGGCTACECS 1017
Query: 315 GHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
C G C+ C NT G C C + G +++ C+AC
Sbjct: 1018 HLGNNCD-----------PKTGRCI-CPPNTIGEKCSKCAPNTW---GHSITT--GCKAC 1060
Query: 375 DCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG-FQQSRSPVAPCVKTPIPGPTEDS 433
+C VG+ CN TGQC C +G C C+ G + R + C +PG +
Sbjct: 1061 NCSTVGSLDFQCNVNTGQCNCHPKFSGAKCTECSRGHWNYPRCNLCDCF---LPGTDATT 1117
Query: 434 SPVQPQDC 441
+ + C
Sbjct: 1118 CDSETKKC 1125
Score = 65.5 bits (158), Expect = 1e-10
Identities = 58/191 (30%), Positives = 72/191 (37%), Gaps = 38/191 (19%)
Query: 273 ICDCRHGTEGPDCGRCKPFYCDRPWQRATARE-SHACLACSCNGHARRCRFNMELYRLSG 331
+C C G G C C P + +R C C C GHA C
Sbjct: 723 VCQCPPGYTGSSCESCWPRH-----RRVNGTIFGGICEPCQCFGHAESCD---------- 767
Query: 332 RRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCH---PVGAAGKTC-- 386
G CLNC+ +T G +C C GFY +P + S+ C+ C C P TC
Sbjct: 768 -DVTGECLNCKDHTGGPYCDKCLPGFYGEPTKGTSE--DCQPCACPLNIPSNNFSPTCHL 824
Query: 387 NQTTGQC--PCKDGVTGLTCNRCAPG-FQQSRSPVAPCVKTPIPGPTEDSSPVQ-PQDCD 442
+++ G C G TG C RCA G F Q P C P D+ P CD
Sbjct: 825 DRSLGLICDGCPVGYTGPRCERCAEGYFGQPSVPGGSCQ----PCQCNDNLDFSIPGSCD 880
Query: 443 S------HCKP 447
S CKP
Sbjct: 881 SLSGSCLICKP 891
Score = 63.9 bits (154), Expect = 4e-10
Identities = 48/174 (27%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 248 DLQVGG--RCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARES 305
+ Q GG C+C+ + C T C C T G C +C P W +
Sbjct: 1005 NFQEGGCTACECSHLGNNCDPKTGR---CICPPNTIGEKCSKCAP----NTWGHSITTGC 1057
Query: 306 HACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRAL 365
AC + +C N G C NC +G C C G + P
Sbjct: 1058 KACNCSTVGSLDFQCNVNT-----------GQC-NCHPKFSGAKCTECSRGHWNYP---- 1101
Query: 366 SDRRACRACDCHPVGAAGKTCNQTT---------GQCPCKDGVTGLTCNRCAPG 410
C CDC G TC+ T GQC CK V G+ C+RC PG
Sbjct: 1102 ----RCNLCDCFLPGTDATTCDSETKKCSCSDQTGQCTCKVNVEGIHCDRCRPG 1151
Score = 38.5 bits (88), Expect = 0.017
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C+ G G C RC Y P C AC+C+G + +
Sbjct: 442 CHCKTGFGGVSCDRCARGYTGYP----------DCKACNCSGLGSK----------NEDP 481
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQ 392
G C+ C+ N G C C+ GF+ + + C C C V ++ T G+
Sbjct: 482 CFGPCI-CKENVEGGDCSRCKSGFF---NLQEDNWKGCDECFCSGVSNRCQSSYWTYGK 536
Score = 37.4 bits (85), Expect = 0.038
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 392 QCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSS-PVQPQDCDSHCKPARG 450
+C C G +GL+C C PGF + RS P +T PGPT + P Q S C P
Sbjct: 1379 KCDCPLGYSGLSCEACLPGFYRLRS--QPGGRT--PGPTLGTCVPCQCNGHSSLCDP-ET 1433
Query: 451 SYRISLKKFCKKDYAVQVAVGARGEARG 478
S + + D+ + A+G G +G
Sbjct: 1434 SICQNCQHHTAGDFCERCALGYYGIVKG 1461
Score = 31.6 bits (70), Expect = 2.1
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 19 LSPGPPAPADPCH-------------DEGGAPRGCVPGLVNAALGREVLASSTCGR---- 61
+SP P P PCH DE A RG PG + G ++ C R
Sbjct: 403 VSPNYPRPCQPCHCDPIGSLNEVCVKDEKHARRGLAPGSCHCKTGFGGVSCDRCARGYTG 462
Query: 62 -PATRACDAS 70
P +AC+ S
Sbjct: 463 YPDCKACNCS 472
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 167 bits (424), Expect = 2e-41
Identities = 130/473 (27%), Positives = 204/473 (43%), Gaps = 72/473 (15%)
Query: 38 RGCVPGLVNAALGREVLASSTCGR--------------------PATRACD--ASDPRRA 75
RG P ++N A + ++TCG P R C+ +S+P +
Sbjct: 37 RGLFPAVLNLASNALITTNATCGEKGPEMYCKLVEHVPGQPVRNPQCRICNQNSSNPNQR 96
Query: 76 HSPALLTSPGGTASPLCWRSESLPRAPLN--VTLTVPLGKAFELVFVSLRFCSAP-PASV 132
H T W+S S+ VT+T+ L + F++ +V ++ ++P P +
Sbjct: 97 HPITNAIDGKNT----WWQSPSIKNGIEYHYVTITLDLQQVFQIAYVIVKAANSPRPGNW 152
Query: 133 ALLKSQD--HGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALC--FPAPLAQPDGS 188
L +S D + W + C Y P E +C F + + P +
Sbjct: 153 ILERSLDDVEYKPWQYHAVTDTECLTLYNIYPRTGPPSYAKDDEVICTSFYSKI-HPLEN 211
Query: 189 GLLAFSMQDSSPPGLDLDSSPVLQDWVTATDVRVVLTRPSTAG---------DPRDMEAV 239
G + S+ + P D SP L ++ +A +R+ R T DPR+++ +
Sbjct: 212 GEIHISLINGRPSADD--PSPELLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREIDPI 269
Query: 240 VP--YSYAATDLQVGGRCKCNGHASRCLLDTQGHLI-CDCRHGTEGPDCGRCKPFYCDRP 296
V Y Y+ D+ VGG C C GHA C LD + C+C H T G C +C P + +P
Sbjct: 270 VTRRYYYSVKDISVGGMCICYGHARACPLDPATNKSRCECEHNTCGDSCDQCCPGFHQKP 329
Query: 297 WQRATARESHACLACSCNGHARRCRFNMELYR------LSGRR-SGGVCLNCRHNTAGRH 349
W+ T C AC+C+G A C ++ + R + G+ GGVC+NC NTAG +
Sbjct: 330 WRAGTFLTKTECEACNCHGKAEECYYDENVARRNLSLNIRGKYIGGGVCINCTQNTAGIN 389
Query: 350 CHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTC---------NQTTGQCPCKDGVT 400
C C +GF+R G + + R C+ C C P+G+ + C G C CK G
Sbjct: 390 CETCTDGFFRPKGVSPNYPRPCQPCHCDPIGSLNEVCVKDEKHARRGLAPGSCHCKTGFG 449
Query: 401 GLTCNRCAPGFQQ-------SRSPVAPCVKTPIPGPTEDSSPVQPQDCDSHCK 446
G++C+RCA G+ + S + + P GP V+ DC S CK
Sbjct: 450 GVSCDRCARGYTGYPDCKACNCSGLGSKNEDPCFGPCICKENVEGGDC-SRCK 501
Score = 88.2 bits (217), Expect = 2e-17
Identities = 54/169 (31%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 258 NGHASRCLLDTQGHLICD-CRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGH 316
N + C LD LICD C G GP C RC Y +P + +C C CN
Sbjct: 816 NNFSPTCHLDRSLGLICDGCPVGYTGPRCERCAEGYFGQP-----SVPGGSCQPCQCND- 869
Query: 317 ARRCRFNMELYRLSGRRSG--GVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
N++ + + G G CL C+ T GR+C C +G++ D D + C+ C
Sbjct: 870 ------NLD-FSIPGSCDSLSGSCLICKPGTTGRYCELCADGYFGDA----VDAKNCQPC 918
Query: 375 DCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF--QQSRSPVAPC 421
C+ G+ + C+ TGQC C+ V G C++C G QS PC
Sbjct: 919 RCNAGGSFSEVCHSQTGQCECRANVQGQRCDKCKAGTFGLQSARGCVPC 967
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/184 (29%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 237 EAVVPYSYAATDLQVGGR-----------CKCNGHASRCLLDTQGHLICDCRHGTEGPDC 285
EA +P Y Q GGR C+CNGH+S C D + + +C+H T G C
Sbjct: 1392 EACLPGFYRLRS-QPGGRTPGPTLGTCVPCQCNGHSSLC--DPETSICQNCQHHTAGDFC 1448
Query: 286 GRCKPFYCDRPWQRATARESHAC-LACSCNGHARRC-RFNMELYRLSGRRSGGVCLNCRH 343
RC Y + AC L S N + C ++ YR C C
Sbjct: 1449 ERCALGYYGIVKGLPNDCQQCACPLISSSNNFSPSCVAEGLDDYR---------CTACPR 1499
Query: 344 NTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLT 403
G++C C G+ PG + +C+ C+C P G+ C+ TG C C+ G TG
Sbjct: 1500 GYEGQYCERCAPGYTGSPG---NPGGSCQECECDPYGSLPVPCDPVTGFCTCRPGATGRK 1556
Query: 404 CNRC 407
C+ C
Sbjct: 1557 CDGC 1560
Score = 69.7 bits (169), Expect = 7e-12
Identities = 45/151 (29%), Positives = 57/151 (37%), Gaps = 24/151 (15%)
Query: 274 CDCRHGTEGPDCGRCKP-FYCDR--PWQRATARESHACLACSCNGHARRCRFNMELYRLS 330
CDC G G C C P FY R P R C+ C CNGH+ C
Sbjct: 1380 CDCPLGYSGLSCEACLPGFYRLRSQPGGRTPGPTLGTCVPCQCNGHSSLCD--------- 1430
Query: 331 GRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTT 390
+C NC+H+TAG C C G+Y G C+ C C + ++
Sbjct: 1431 --PETSICQNCQHHTAGDFCERCALGYY---GIVKGLPNDCQQCACPLISSSNNFSPSCV 1485
Query: 391 GQ-------CPCKDGVTGLTCNRCAPGFQQS 414
+ C G G C RCAPG+ S
Sbjct: 1486 AEGLDDYRCTACPRGYEGQYCERCAPGYTGS 1516
Score = 68.2 bits (165), Expect = 2e-11
Identities = 49/188 (26%), Positives = 71/188 (37%), Gaps = 30/188 (15%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCN 314
C CN S+ D + C C+ G G C RC Y + + C AC C+
Sbjct: 967 CNCNSFGSKSF-DCEESGQCWCQPGVTGKKCDRCAHGYFNF--------QEGGCTACECS 1017
Query: 315 GHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRAC 374
C G C+ C NT G C C + G +++ C+AC
Sbjct: 1018 HLGNNCD-----------PKTGRCI-CPPNTIGEKCSKCAPNTW---GHSITT--GCKAC 1060
Query: 375 DCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPG-FQQSRSPVAPCVKTPIPGPTEDS 433
+C VG+ CN TGQC C +G C C+ G + R + C +PG +
Sbjct: 1061 NCSTVGSLDFQCNVNTGQCNCHPKFSGAKCTECSRGHWNYPRCNLCDCF---LPGTDATT 1117
Query: 434 SPVQPQDC 441
+ + C
Sbjct: 1118 CDSETKKC 1125
Score = 65.5 bits (158), Expect = 1e-10
Identities = 58/191 (30%), Positives = 72/191 (37%), Gaps = 38/191 (19%)
Query: 273 ICDCRHGTEGPDCGRCKPFYCDRPWQRATARE-SHACLACSCNGHARRCRFNMELYRLSG 331
+C C G G C C P + +R C C C GHA C
Sbjct: 723 VCQCPPGYTGSSCESCWPRH-----RRVNGTIFGGICEPCQCFGHAESCD---------- 767
Query: 332 RRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCH---PVGAAGKTC-- 386
G CLNC+ +T G +C C GFY +P + S+ C+ C C P TC
Sbjct: 768 -DVTGECLNCKDHTGGPYCDKCLPGFYGEPTKGTSE--DCQPCACPLNIPSNNFSPTCHL 824
Query: 387 NQTTGQC--PCKDGVTGLTCNRCAPG-FQQSRSPVAPCVKTPIPGPTEDSSPVQ-PQDCD 442
+++ G C G TG C RCA G F Q P C P D+ P CD
Sbjct: 825 DRSLGLICDGCPVGYTGPRCERCAEGYFGQPSVPGGSCQ----PCQCNDNLDFSIPGSCD 880
Query: 443 S------HCKP 447
S CKP
Sbjct: 881 SLSGSCLICKP 891
Score = 63.9 bits (154), Expect = 4e-10
Identities = 48/174 (27%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 248 DLQVGG--RCKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARES 305
+ Q GG C+C+ + C T C C T G C +C P W +
Sbjct: 1005 NFQEGGCTACECSHLGNNCDPKTGR---CICPPNTIGEKCSKCAP----NTWGHSITTGC 1057
Query: 306 HACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRAL 365
AC + +C N G C NC +G C C G + P
Sbjct: 1058 KACNCSTVGSLDFQCNVNT-----------GQC-NCHPKFSGAKCTECSRGHWNYP---- 1101
Query: 366 SDRRACRACDCHPVGAAGKTCNQTT---------GQCPCKDGVTGLTCNRCAPG 410
C CDC G TC+ T GQC CK V G+ C+RC PG
Sbjct: 1102 ----RCNLCDCFLPGTDATTCDSETKKCSCSDQTGQCTCKVNVEGIHCDRCRPG 1151
Score = 38.5 bits (88), Expect = 0.017
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C+ G G C RC Y P C AC+C+G + +
Sbjct: 442 CHCKTGFGGVSCDRCARGYTGYP----------DCKACNCSGLGSK----------NEDP 481
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQ 392
G C+ C+ N G C C+ GF+ + + C C C V ++ T G+
Sbjct: 482 CFGPCI-CKENVEGGDCSRCKSGFF---NLQEDNWKGCDECFCSGVSNRCQSSYWTYGK 536
Score = 37.4 bits (85), Expect = 0.038
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 392 QCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSS-PVQPQDCDSHCKPARG 450
+C C G +GL+C C PGF + RS P +T PGPT + P Q S C P
Sbjct: 1379 KCDCPLGYSGLSCEACLPGFYRLRS--QPGGRT--PGPTLGTCVPCQCNGHSSLCDP-ET 1433
Query: 451 SYRISLKKFCKKDYAVQVAVGARGEARG 478
S + + D+ + A+G G +G
Sbjct: 1434 SICQNCQHHTAGDFCERCALGYYGIVKG 1461
Score = 31.6 bits (70), Expect = 2.1
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 19 LSPGPPAPADPCH-------------DEGGAPRGCVPGLVNAALGREVLASSTCGR---- 61
+SP P P PCH DE A RG PG + G ++ C R
Sbjct: 403 VSPNYPRPCQPCHCDPIGSLNEVCVKDEKHARRGLAPGSCHCKTGFGGVSCDRCARGYTG 462
Query: 62 -PATRACDAS 70
P +AC+ S
Sbjct: 463 YPDCKACNCS 472
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 163 bits (412), Expect = 5e-40
Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 23/321 (7%)
Query: 105 VTLTVPLGKA-FELVFVSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPA 163
VT++V L +++ ++ ++F S P + + + +++ W +F+ +C G
Sbjct: 369 VTISVDLENGQYQVFYIIIQFFSPQPTEIRIQRKKENSLDWEDWQYFARNC----GAFGM 424
Query: 164 PANGPAGPGPEALCFPAPLAQPDGSGLLAFSMQDSSP---PGLD-LDSSPVLQDWVTATD 219
NG C P G + FS+ P PG + ++P LQ++V AT
Sbjct: 425 KNNGDLEKPDSVNCLQLSNFTPYSRGNVTFSILTPGPNYRPGYNNFYNTPSLQEFVKATQ 484
Query: 220 VRVVLTRPSTAGDPRDMEAVVPYS---YAATDLQVGGRCKCNGHASRCLLDTQGH-LICD 275
+R G E V YA ++ + GRC+C+GHA C +Q + +C
Sbjct: 485 IRFHFH-----GQYYTTETAVNLRHRYYAVDEITISGRCQCHGHADNCDTTSQPYRCLCS 539
Query: 276 CRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSG---R 332
TEG C RC P Y D+P+++ + C C CN H++ C +N+ + R
Sbjct: 540 QESFTEGLHCDRCLPLYNDKPFRQGDQVYAFNCKPCQCNSHSKSCHYNISVDPFPFEHFR 599
Query: 333 RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKT--CNQTT 390
GGVC +C HNT GR+C C++ F+R G S C+ CDC VG + C+Q
Sbjct: 600 GGGGVCDDCEHNTTGRNCELCKDYFFRQVGADPSAIDVCKPCDCDTVGTRNGSILCDQIG 659
Query: 391 GQCPCKDGVTGLTCNRCAPGF 411
GQC CK V+G CN+C GF
Sbjct: 660 GQCNCKRHVSGRQCNQCQNGF 680
Score = 77.4 bits (189), Expect = 3e-14
Identities = 52/165 (31%), Positives = 68/165 (41%), Gaps = 37/165 (22%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKP-FYCDRPWQRATARESHACLACSC 313
C+CN H S C+C+ +G C C+ FY + C AC C
Sbjct: 747 CQCNLHGSVNKFCNPHSGQCECKKEAKGLQCDTCRENFY---------GLDVTNCKACDC 797
Query: 314 NGHARRCRFNMELYRLSGRRSGGVC------LNCRHNTAGRHCHYCREG-FYRDPGRALS 366
+ +G G VC C+ N GR C+ C EG FY +
Sbjct: 798 D--------------TAGSLPGTVCNAKTGQCICKPNVEGRQCNKCLEGNFYLRQNNSF- 842
Query: 367 DRRACRACDCHPVGAAGKT--CNQTTGQCPCKDGVTGLTCNRCAP 409
C C+C G + CN++TGQCPCK GVTGL CN+C P
Sbjct: 843 ---LCLPCNCDKTGTINGSLLCNKSTGQCPCKLGVTGLRCNQCEP 884
Score = 75.1 bits (183), Expect = 2e-13
Identities = 58/191 (30%), Positives = 73/191 (38%), Gaps = 45/191 (23%)
Query: 250 QVGGRCKCNGHAS-----RCL--------LDTQGHLICDCR-HGTEGPDC------GRCK 289
Q+GG+C C H S +C LD G C+C GT D G+CK
Sbjct: 657 QIGGQCNCKRHVSGRQCNQCQNGFYNLQELDPDGCSPCNCNTSGTVDGDITCHQNSGQCK 716
Query: 290 PF---------YCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLN 340
+C+ ++ + C C CN H +F G C
Sbjct: 717 CKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQCNLHGSVNKFC--------NPHSGQC-E 767
Query: 341 CRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAA-GKTCNQTTGQCPCKDGV 399
C+ G C CRE FY D C+ACDC G+ G CN TGQC CK V
Sbjct: 768 CKKEAKGLQCDTCRENFYG------LDVTNCKACDCDTAGSLPGTVCNAKTGQCICKPNV 821
Query: 400 TGLTCNRCAPG 410
G CN+C G
Sbjct: 822 EGRQCNKCLEG 832
Score = 74.7 bits (182), Expect = 2e-13
Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 35/184 (19%)
Query: 260 HASRCLLDTQGHL---ICD-------CRHGTEGPDCGRCKPFYCDRPWQRATARESHACL 309
H C D+ G L ICD C +G C +C+P + P CL
Sbjct: 896 HCQMCECDSLGTLPGTICDPISGQCLCVPNRQGRRCNQCQPGFYISPGNAT------GCL 949
Query: 310 ACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCRE---GFYRDPGRALS 366
CSC+ N L+G+ C+ + AG+ C C++ GF GR
Sbjct: 950 PCSCHTTGA---VNHICNSLTGQ-----CVCQDASIAGQRCDQCKDHYFGFDPQTGR--- 998
Query: 367 DRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQ-SRSPVAPCVKTP 425
C+ C+CH GA +TC+ TGQC CK VTG C+ C P + + C KTP
Sbjct: 999 ----CQPCNCHLSGALNETCHLVTGQCFCKQFVTGSKCDACVPSASHLDVNNLLGCSKTP 1054
Query: 426 IPGP 429
P
Sbjct: 1055 FQQP 1058
Score = 67.4 bits (163), Expect = 3e-11
Identities = 52/220 (23%), Positives = 76/220 (34%), Gaps = 73/220 (33%)
Query: 255 CKCNGHASRCLLDTQ------------GHLICDCRHGTEGPDCGRCKPFYCDRPWQRATA 302
C+CN H+ C + G + DC H T G +C CK ++ + +A
Sbjct: 575 CQCNSHSKSCHYNISVDPFPFEHFRGGGGVCDDCEHNTTGRNCELCKDYFFRQVGADPSA 634
Query: 303 RESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYR--- 359
+ C C C+ R + + GG C NC+ + +GR C+ C+ GFY
Sbjct: 635 ID--VCKPCDCDTVGTRNG------SILCDQIGGQC-NCKRHVSGRQCNQCQNGFYNLQE 685
Query: 360 -DPG-----------------------------------------------RALSDRRAC 371
DP R+ +D C
Sbjct: 686 LDPDGCSPCNCNTSGTVDGDITCHQNSGQCKCKANVIGLRCDHCNFGFKFLRSFNDV-GC 744
Query: 372 RACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
C C+ G+ K CN +GQC CK GL C+ C F
Sbjct: 745 EPCQCNLHGSVNKFCNPHSGQCECKKEAKGLQCDTCRENF 784
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 163 bits (412), Expect = 5e-40
Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 23/321 (7%)
Query: 105 VTLTVPLGKA-FELVFVSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPA 163
VT++V L +++ ++ ++F S P + + + +++ W +F+ +C G
Sbjct: 369 VTISVDLENGQYQVFYIIIQFFSPQPTEIRIQRKKENSLDWEDWQYFARNC----GAFGM 424
Query: 164 PANGPAGPGPEALCFPAPLAQPDGSGLLAFSMQDSSP---PGLD-LDSSPVLQDWVTATD 219
NG C P G + FS+ P PG + ++P LQ++V AT
Sbjct: 425 KNNGDLEKPDSVNCLQLSNFTPYSRGNVTFSILTPGPNYRPGYNNFYNTPSLQEFVKATQ 484
Query: 220 VRVVLTRPSTAGDPRDMEAVVPYS---YAATDLQVGGRCKCNGHASRCLLDTQGH-LICD 275
+R G E V YA ++ + GRC+C+GHA C +Q + +C
Sbjct: 485 IRFHFH-----GQYYTTETAVNLRHRYYAVDEITISGRCQCHGHADNCDTTSQPYRCLCS 539
Query: 276 CRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSG---R 332
TEG C RC P Y D+P+++ + C C CN H++ C +N+ + R
Sbjct: 540 QESFTEGLHCDRCLPLYNDKPFRQGDQVYAFNCKPCQCNSHSKSCHYNISVDPFPFEHFR 599
Query: 333 RSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKT--CNQTT 390
GGVC +C HNT GR+C C++ F+R G S C+ CDC VG + C+Q
Sbjct: 600 GGGGVCDDCEHNTTGRNCELCKDYFFRQVGADPSAIDVCKPCDCDTVGTRNGSILCDQIG 659
Query: 391 GQCPCKDGVTGLTCNRCAPGF 411
GQC CK V+G CN+C GF
Sbjct: 660 GQCNCKRHVSGRQCNQCQNGF 680
Score = 77.4 bits (189), Expect = 3e-14
Identities = 52/165 (31%), Positives = 68/165 (41%), Gaps = 37/165 (22%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKP-FYCDRPWQRATARESHACLACSC 313
C+CN H S C+C+ +G C C+ FY + C AC C
Sbjct: 747 CQCNLHGSVNKFCNPHSGQCECKKEAKGLQCDTCRENFY---------GLDVTNCKACDC 797
Query: 314 NGHARRCRFNMELYRLSGRRSGGVC------LNCRHNTAGRHCHYCREG-FYRDPGRALS 366
+ +G G VC C+ N GR C+ C EG FY +
Sbjct: 798 D--------------TAGSLPGTVCNAKTGQCICKPNVEGRQCNKCLEGNFYLRQNNSF- 842
Query: 367 DRRACRACDCHPVGAAGKT--CNQTTGQCPCKDGVTGLTCNRCAP 409
C C+C G + CN++TGQCPCK GVTGL CN+C P
Sbjct: 843 ---LCLPCNCDKTGTINGSLLCNKSTGQCPCKLGVTGLRCNQCEP 884
Score = 75.1 bits (183), Expect = 2e-13
Identities = 58/191 (30%), Positives = 73/191 (38%), Gaps = 45/191 (23%)
Query: 250 QVGGRCKCNGHAS-----RCL--------LDTQGHLICDCR-HGTEGPDC------GRCK 289
Q+GG+C C H S +C LD G C+C GT D G+CK
Sbjct: 657 QIGGQCNCKRHVSGRQCNQCQNGFYNLQELDPDGCSPCNCNTSGTVDGDITCHQNSGQCK 716
Query: 290 PF---------YCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLN 340
+C+ ++ + C C CN H +F G C
Sbjct: 717 CKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQCNLHGSVNKFC--------NPHSGQC-E 767
Query: 341 CRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAA-GKTCNQTTGQCPCKDGV 399
C+ G C CRE FY D C+ACDC G+ G CN TGQC CK V
Sbjct: 768 CKKEAKGLQCDTCRENFYG------LDVTNCKACDCDTAGSLPGTVCNAKTGQCICKPNV 821
Query: 400 TGLTCNRCAPG 410
G CN+C G
Sbjct: 822 EGRQCNKCLEG 832
Score = 74.7 bits (182), Expect = 2e-13
Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 35/184 (19%)
Query: 260 HASRCLLDTQGHL---ICD-------CRHGTEGPDCGRCKPFYCDRPWQRATARESHACL 309
H C D+ G L ICD C +G C +C+P + P CL
Sbjct: 896 HCQMCECDSLGTLPGTICDPISGQCLCVPNRQGRRCNQCQPGFYISPGNAT------GCL 949
Query: 310 ACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCRE---GFYRDPGRALS 366
CSC+ N L+G+ C+ + AG+ C C++ GF GR
Sbjct: 950 PCSCHTTGA---VNHICNSLTGQ-----CVCQDASIAGQRCDQCKDHYFGFDPQTGR--- 998
Query: 367 DRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQ-SRSPVAPCVKTP 425
C+ C+CH GA +TC+ TGQC CK VTG C+ C P + + C KTP
Sbjct: 999 ----CQPCNCHLSGALNETCHLVTGQCFCKQFVTGSKCDACVPSASHLDVNNLLGCSKTP 1054
Query: 426 IPGP 429
P
Sbjct: 1055 FQQP 1058
Score = 67.4 bits (163), Expect = 3e-11
Identities = 52/220 (23%), Positives = 76/220 (34%), Gaps = 73/220 (33%)
Query: 255 CKCNGHASRCLLDTQ------------GHLICDCRHGTEGPDCGRCKPFYCDRPWQRATA 302
C+CN H+ C + G + DC H T G +C CK ++ + +A
Sbjct: 575 CQCNSHSKSCHYNISVDPFPFEHFRGGGGVCDDCEHNTTGRNCELCKDYFFRQVGADPSA 634
Query: 303 RESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYR--- 359
+ C C C+ R + + GG C NC+ + +GR C+ C+ GFY
Sbjct: 635 ID--VCKPCDCDTVGTRNG------SILCDQIGGQC-NCKRHVSGRQCNQCQNGFYNLQE 685
Query: 360 -DPG-----------------------------------------------RALSDRRAC 371
DP R+ +D C
Sbjct: 686 LDPDGCSPCNCNTSGTVDGDITCHQNSGQCKCKANVIGLRCDHCNFGFKFLRSFNDV-GC 744
Query: 372 RACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
C C+ G+ K CN +GQC CK GL C+ C F
Sbjct: 745 EPCQCNLHGSVNKFCNPHSGQCECKKEAKGLQCDTCRENF 784
>gi|54312078 netrin G1 isoform 3 [Homo sapiens]
Length = 438
Score = 124 bits (311), Expect = 2e-28
Identities = 103/361 (28%), Positives = 146/361 (40%), Gaps = 48/361 (13%)
Query: 58 TCGRP------------ATRACDASDPRRAHSPALLTSPGGTASPLCWRSESLPR--APL 103
TCG P CDAS P AH P L+ G W+S + PL
Sbjct: 71 TCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPL 130
Query: 104 NVTLTVPLGKAFELVF-VSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLP 162
V +T+ K EL + + F S P + L KS D+GR+W P ++++ C LD +
Sbjct: 131 QVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDC-LDAFHMD 189
Query: 163 APANGPAGPGP--EALCFPA-PLAQPDGSGLLAFSMQDS----SPPGL--------DLDS 207
+ E +C S ++ F ++D + P L LD+
Sbjct: 190 PKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDT 249
Query: 208 SPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLD 267
+ L+D+ T TD+R+ L RP+ D + Y YA +D++V GRCKCN HA+ C+ D
Sbjct: 250 TKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYD 309
Query: 268 TQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELY 327
L C+C H T GPDCG+CK Y RPW + A +C N+
Sbjct: 310 -NSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGTNVCDN 368
Query: 328 RLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCN 387
L ++GG C HN C G C C G+ G
Sbjct: 369 ELLHCQNGGTC----HNNVRCLCPAAYTGI------------LCEKLRCEEAGSCGSDSG 412
Query: 388 Q 388
Q
Sbjct: 413 Q 413
Score = 32.0 bits (71), Expect = 1.6
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 364 ALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVK 423
A+SD + C C+ + A + + C C+ TG C +C +Q P +P
Sbjct: 287 AISDIKVRGRCKCN-LHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQ--GRPWSPGSY 343
Query: 424 TPIPGPTEDS-----SPVQPQDCDS---HCKPARGSYRISLKKFCKKDYAVQVAVGARGE 475
PIP T ++ S + CD+ HC+ G+ +++ C Y + R E
Sbjct: 344 LPIPKGTANTCIPSISSIGTNVCDNELLHCQNG-GTCHNNVRCLCPAAYTGILCEKLRCE 402
Query: 476 ARGA 479
G+
Sbjct: 403 EAGS 406
>gi|164414437 netrin G1 isoform 2 [Homo sapiens]
Length = 480
Score = 123 bits (308), Expect = 5e-28
Identities = 87/270 (32%), Positives = 124/270 (45%), Gaps = 32/270 (11%)
Query: 58 TCGRP------------ATRACDASDPRRAHSPALLTSPGGTASPLCWRSESLPR--APL 103
TCG P CDAS P AH P L+ G W+S + PL
Sbjct: 71 TCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPL 130
Query: 104 NVTLTVPLGKAFELVF-VSLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLP 162
V +T+ K EL + + F S P + L KS D+GR+W P ++++ C LD +
Sbjct: 131 QVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDC-LDAFHMD 189
Query: 163 APANGPAGPGP--EALCFPA-PLAQPDGSGLLAFSMQDS----SPPGL--------DLDS 207
+ E +C S ++ F ++D + P L LD+
Sbjct: 190 PKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDT 249
Query: 208 SPVLQDWVTATDVRVVLTRPSTAGDPRDMEAVVPYSYAATDLQVGGRCKCNGHASRCLLD 267
+ L+D+ T TD+R+ L RP+ D + Y YA +D++V GRCKCN HA+ C+ D
Sbjct: 250 TKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYD 309
Query: 268 TQGHLICDCRHGTEGPDCGRCKPFYCDRPW 297
L C+C H T GPDCG+CK Y RPW
Sbjct: 310 -NSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
>gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens]
Length = 1111
Score = 105 bits (261), Expect = 1e-22
Identities = 64/179 (35%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 286 GRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNT 345
G C F P RAT+R C CNG +R+C F+ EL+R +G +G CLNC NT
Sbjct: 7 GCCLCFSLLLPAARATSRRE----VCDCNGKSRQCIFDRELHRQTG--NGFRCLNCNDNT 60
Query: 346 AGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCN 405
G HC C+ GFYR +R C C+C+ G+ C+ +G+C CK GVTG C+
Sbjct: 61 DGIHCEKCKNGFYRH-----RERDRCLPCNCNSKGSLSARCD-NSGRCSCKPGVTGARCD 114
Query: 406 RCAPGF-----------QQSRSPVAPCVKTPIPGPTEDSSPV-QPQDCDSHCKPARGSY 452
RC PGF Q+ C I GP + V +P C R Y
Sbjct: 115 RCLPGFHMLTDAGCTQDQRLLDSKCDCDPAGIAGPCDAGRCVCKPAVTGERCDRCRSGY 173
Score = 81.6 bits (200), Expect = 2e-15
Identities = 53/167 (31%), Positives = 68/167 (40%), Gaps = 31/167 (18%)
Query: 255 CKCNGHASRCLLDTQ-------GHLICDCRHGTEGPDCGRCK-PFYCDRPWQRATARESH 306
C CNG + +C+ D + G +C T+G C +CK FY RE
Sbjct: 28 CDCNGKSRQCIFDRELHRQTGNGFRCLNCNDNTDGIHCEKCKNGFY--------RHRERD 79
Query: 307 ACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY--RDPGRA 364
CL C+CN LS R +C+ G C C GF+ D G
Sbjct: 80 RCLPCNCNSKG----------SLSARCDNSGRCSCKPGVTGARCDRCLPGFHMLTDAGCT 129
Query: 365 LSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
R CDC P G AG C+ G+C CK VTG C+RC G+
Sbjct: 130 QDQRLLDSKCDCDPAGIAG-PCD--AGRCVCKPAVTGERCDRCRSGY 173
Score = 79.0 bits (193), Expect = 1e-14
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 255 CKC-NGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPW-QRATARESHACLACS 312
C C NG + + +T+ + +C G G C C Y P+ + R C C
Sbjct: 462 CPCHNGFSCSVMPETEEVVCNNCPPGVTGARCELCADGYFGDPFGEHGPVRP---CQPCQ 518
Query: 313 CNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACR 372
CN + RL+GR CL C HNTAG +C C+ G++ DP A + CR
Sbjct: 519 CNNNVDPSASG-NCDRLTGR-----CLKCIHNTAGIYCDQCKAGYFGDP-LAPNPADKCR 571
Query: 373 ACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCA 408
AC+C+P+G+ C ++ G C CK G G C A
Sbjct: 572 ACNCNPMGSEPVGC-RSDGTCVCKPGFGGPNCEHGA 606
Score = 50.1 bits (118), Expect = 6e-06
Identities = 49/184 (26%), Positives = 65/184 (35%), Gaps = 48/184 (26%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESH--ACLACSCNGHARRCRFNMELYRLSG 331
C C G +G C C Y +R +AR C+ C+C G + Y SG
Sbjct: 382 CICPVGYKGQFCQDCASGY-----KRDSARLGPFGTCIPCNCQGGGACDPDTGDCY--SG 434
Query: 332 RRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCH---PVGAAGKTCNQ 388
+ + C C GFY DP D R+C+ C CH +T
Sbjct: 435 DENPDI-----------ECADCPIGFYNDP----HDPRSCKPCPCHNGFSCSVMPETEEV 479
Query: 389 TTGQCPCKDGVTGLTCNRCAPGF----QQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSH 444
CP GVTG C CA G+ PV PC QP C+++
Sbjct: 480 VCNNCP--PGVTGARCELCADGYFGDPFGEHGPVRPC---------------QPCQCNNN 522
Query: 445 CKPA 448
P+
Sbjct: 523 VDPS 526
Score = 43.1 bits (100), Expect = 7e-04
Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 22/126 (17%)
Query: 255 CKCNGHAS---RCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLAC 311
C CN S RC D G C C+ G G C RC P + T + C
Sbjct: 84 CNCNSKGSLSARC--DNSGR--CSCKPGVTGARCDRCLPGFHMLTDAGCTQDQRLLDSKC 139
Query: 312 SCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRAC 371
C+ ++G G C+ C+ G C CR G+Y G + C
Sbjct: 140 DCDPAG-----------IAGPCDAGRCV-CKPAVTGERCDRCRSGYYNLDG---GNPEGC 184
Query: 372 RACDCH 377
C C+
Sbjct: 185 TQCFCY 190
Score = 32.7 bits (73), Expect = 0.94
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNME 325
C C+ G C RC+ Y + C C C GH+ CR + E
Sbjct: 155 CVCKPAVTGERCDRCRSGYYN-----LDGGNPEGCTQCFCYGHSASCRSSAE 201
>gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens]
Length = 1193
Score = 105 bits (261), Expect = 1e-22
Identities = 64/179 (35%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 286 GRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNT 345
G C F P RAT+R C CNG +R+C F+ EL+R +G +G CLNC NT
Sbjct: 7 GCCLCFSLLLPAARATSRRE----VCDCNGKSRQCIFDRELHRQTG--NGFRCLNCNDNT 60
Query: 346 AGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCN 405
G HC C+ GFYR +R C C+C+ G+ C+ +G+C CK GVTG C+
Sbjct: 61 DGIHCEKCKNGFYRH-----RERDRCLPCNCNSKGSLSARCD-NSGRCSCKPGVTGARCD 114
Query: 406 RCAPGF-----------QQSRSPVAPCVKTPIPGPTEDSSPV-QPQDCDSHCKPARGSY 452
RC PGF Q+ C I GP + V +P C R Y
Sbjct: 115 RCLPGFHMLTDAGCTQDQRLLDSKCDCDPAGIAGPCDAGRCVCKPAVTGERCDRCRSGY 173
Score = 81.6 bits (200), Expect = 2e-15
Identities = 53/167 (31%), Positives = 68/167 (40%), Gaps = 31/167 (18%)
Query: 255 CKCNGHASRCLLDTQ-------GHLICDCRHGTEGPDCGRCK-PFYCDRPWQRATARESH 306
C CNG + +C+ D + G +C T+G C +CK FY RE
Sbjct: 28 CDCNGKSRQCIFDRELHRQTGNGFRCLNCNDNTDGIHCEKCKNGFY--------RHRERD 79
Query: 307 ACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY--RDPGRA 364
CL C+CN LS R +C+ G C C GF+ D G
Sbjct: 80 RCLPCNCNSKG----------SLSARCDNSGRCSCKPGVTGARCDRCLPGFHMLTDAGCT 129
Query: 365 LSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF 411
R CDC P G AG C+ G+C CK VTG C+RC G+
Sbjct: 130 QDQRLLDSKCDCDPAGIAG-PCD--AGRCVCKPAVTGERCDRCRSGY 173
Score = 79.0 bits (193), Expect = 1e-14
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 255 CKC-NGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPW-QRATARESHACLACS 312
C C NG + + +T+ + +C G G C C Y P+ + R C C
Sbjct: 462 CPCHNGFSCSVMPETEEVVCNNCPPGVTGARCELCADGYFGDPFGEHGPVRP---CQPCQ 518
Query: 313 CNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACR 372
CN + RL+GR CL C HNTAG +C C+ G++ DP A + CR
Sbjct: 519 CNNNVDPSASG-NCDRLTGR-----CLKCIHNTAGIYCDQCKAGYFGDP-LAPNPADKCR 571
Query: 373 ACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCA 408
AC+C+P+G+ C ++ G C CK G G C A
Sbjct: 572 ACNCNPMGSEPVGC-RSDGTCVCKPGFGGPNCEHGA 606
Score = 50.1 bits (118), Expect = 6e-06
Identities = 49/184 (26%), Positives = 65/184 (35%), Gaps = 48/184 (26%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESH--ACLACSCNGHARRCRFNMELYRLSG 331
C C G +G C C Y +R +AR C+ C+C G + Y SG
Sbjct: 382 CICPVGYKGQFCQDCASGY-----KRDSARLGPFGTCIPCNCQGGGACDPDTGDCY--SG 434
Query: 332 RRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCH---PVGAAGKTCNQ 388
+ + C C GFY DP D R+C+ C CH +T
Sbjct: 435 DENPDI-----------ECADCPIGFYNDP----HDPRSCKPCPCHNGFSCSVMPETEEV 479
Query: 389 TTGQCPCKDGVTGLTCNRCAPGF----QQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSH 444
CP GVTG C CA G+ PV PC QP C+++
Sbjct: 480 VCNNCP--PGVTGARCELCADGYFGDPFGEHGPVRPC---------------QPCQCNNN 522
Query: 445 CKPA 448
P+
Sbjct: 523 VDPS 526
Score = 43.1 bits (100), Expect = 7e-04
Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 22/126 (17%)
Query: 255 CKCNGHAS---RCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLAC 311
C CN S RC D G C C+ G G C RC P + T + C
Sbjct: 84 CNCNSKGSLSARC--DNSGR--CSCKPGVTGARCDRCLPGFHMLTDAGCTQDQRLLDSKC 139
Query: 312 SCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRAC 371
C+ ++G G C+ C+ G C CR G+Y G + C
Sbjct: 140 DCDPAG-----------IAGPCDAGRCV-CKPAVTGERCDRCRSGYYNLDG---GNPEGC 184
Query: 372 RACDCH 377
C C+
Sbjct: 185 TQCFCY 190
Score = 32.7 bits (73), Expect = 0.94
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNME 325
C C+ G C RC+ Y + C C C GH+ CR + E
Sbjct: 155 CVCKPAVTGERCDRCRSGYYN-----LDGGNPEGCTQCFCYGHSASCRSSAE 201
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 95.5 bits (236), Expect = 1e-19
Identities = 57/157 (36%), Positives = 75/157 (47%), Gaps = 37/157 (23%)
Query: 308 CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSD 367
C+ C+CNGH+ +C+ G+C+NC+HNTAG HC C+EG+Y G A+
Sbjct: 75 CVPCNCNGHSNQCQ-----------DGSGICVNCQHNTAGEHCERCQEGYY---GNAV-- 118
Query: 368 RRACRACDCHPVG--AAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF----QQSRSPVAPC 421
+CRAC C A G N +C CK G TG C RCAPG+ Q+ PC
Sbjct: 119 HGSCRACPCPHTNSFATGCVVNGGDVRCSCKAGYTGTQCERCAPGYFGNPQKFGGSCQPC 178
Query: 422 VKT---------PIPG-----PTEDSSPVQP-QDCDS 443
P+ G +DSSP + DCDS
Sbjct: 179 SCNSNGQLGSCHPLTGDCINQEPKDSSPAEECDDCDS 215
Score = 65.9 bits (159), Expect = 1e-10
Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 255 CKCNGHASRCLLDTQGHLIC-DCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSC 313
C CNGH+++C G IC +C+H T G C RC+ Y + A AC
Sbjct: 78 CNCNGHSNQC---QDGSGICVNCQHNTAGEHCERCQEGY----YGNAVHGSCRACPCPHT 130
Query: 314 NGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRA 373
N A C N G V +C+ G C C G++ +P + +C+
Sbjct: 131 NSFATGCVVN----------GGDVRCSCKAGYTGTQCERCAPGYFGNPQKF---GGSCQP 177
Query: 374 CDCHPVGAAGKTCNQTTGQC---PCKDGVTGLTCNRC 407
C C+ G G +C+ TG C KD C+ C
Sbjct: 178 CSCNSNGQLG-SCHPLTGDCINQEPKDSSPAEECDDC 213
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 95.5 bits (236), Expect = 1e-19
Identities = 57/157 (36%), Positives = 75/157 (47%), Gaps = 37/157 (23%)
Query: 308 CLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSD 367
C+ C+CNGH+ +C+ G+C+NC+HNTAG HC C+EG+Y G A+
Sbjct: 75 CVPCNCNGHSNQCQ-----------DGSGICVNCQHNTAGEHCERCQEGYY---GNAV-- 118
Query: 368 RRACRACDCHPVG--AAGKTCNQTTGQCPCKDGVTGLTCNRCAPGF----QQSRSPVAPC 421
+CRAC C A G N +C CK G TG C RCAPG+ Q+ PC
Sbjct: 119 HGSCRACPCPHTNSFATGCVVNGGDVRCSCKAGYTGTQCERCAPGYFGNPQKFGGSCQPC 178
Query: 422 VKT---------PIPG-----PTEDSSPVQP-QDCDS 443
P+ G +DSSP + DCDS
Sbjct: 179 SCNSNGQLGSCHPLTGDCINQEPKDSSPAEECDDCDS 215
Score = 65.9 bits (159), Expect = 1e-10
Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 255 CKCNGHASRCLLDTQGHLIC-DCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSC 313
C CNGH+++C G IC +C+H T G C RC+ Y + A AC
Sbjct: 78 CNCNGHSNQC---QDGSGICVNCQHNTAGEHCERCQEGY----YGNAVHGSCRACPCPHT 130
Query: 314 NGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRA 373
N A C N G V +C+ G C C G++ +P + +C+
Sbjct: 131 NSFATGCVVN----------GGDVRCSCKAGYTGTQCERCAPGYFGNPQKF---GGSCQP 177
Query: 374 CDCHPVGAAGKTCNQTTGQC---PCKDGVTGLTCNRC 407
C C+ G G +C+ TG C KD C+ C
Sbjct: 178 CSCNSNGQLG-SCHPLTGDCINQEPKDSSPAEECDDC 213
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 90.5 bits (223), Expect = 4e-18
Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 254 RCKCNGHASRCLLDTQGHLICD-CRHGTEGPDCGRCKP-FYCDRPWQRATARESHACLAC 311
RC C+GH+ C +T C C+H TEGP C +C+P +Y D QR T ++ C C
Sbjct: 1158 RCSCHGHSEACEPETGA---CQGCQHHTEGPRCEQCQPGYYGDA--QRGTPQD---CQLC 1209
Query: 312 SCNGH------ARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRAL 365
C G A C + + C C +GRHC C G+Y +P +
Sbjct: 1210 PCYGDPAAGQAAHTCFLDTD--------GHPTCDACSPGHSGRHCERCAPGYYGNPSQGQ 1261
Query: 366 SDRRACR-----ACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAP 409
+R + C+C P G+ C+ GQC CK V GLTC+ C P
Sbjct: 1262 PCQRDSQVPGPIGCNCDPQGSVSSQCD-AAGQCQCKAQVEGLTCSHCRP 1309
Score = 87.8 bits (216), Expect = 2e-17
Identities = 53/164 (32%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C G GP C C Y P + C CSC+GH+ C
Sbjct: 1126 CSCPPGYRGPSCQDCDTGYTRTP----SGLYLGTCERCSCHGHSEACE-----------P 1170
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGK---TCNQTT 390
G C C+H+T G C C+ G+Y D R + C+ C C+ AAG+ TC T
Sbjct: 1171 ETGACQGCQHHTEGPRCEQCQPGYYGDAQRGTP--QDCQLCPCYGDPAAGQAAHTCFLDT 1228
Query: 391 GQCP----CKDGVTGLTCNRCAPGFQQSRSPVAPCVK-TPIPGP 429
P C G +G C RCAPG+ + S PC + + +PGP
Sbjct: 1229 DGHPTCDACSPGHSGRHCERCAPGYYGNPSQGQPCQRDSQVPGP 1272
Score = 80.5 bits (197), Expect = 4e-15
Identities = 52/154 (33%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C G G C C + P C C+CNGHA C +Y
Sbjct: 731 CRCPIGYSGLSCESCDAHFTRVPGGPYLG----TCSGCNCNGHASSCD---PVY------ 777
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGK---TC-NQT 389
G CLNC+HNT G C+ C+ GF+ D +A + +CR C C + A+ + TC T
Sbjct: 778 --GHCLNCQHNTEGPQCNKCKAGFFGDAMKATA--TSCRPCPCPYIDASRRFSDTCFLDT 833
Query: 390 TGQC---PCKDGVTGLTCNRCAPGFQQSRSPVAP 420
GQ C G TG C CAPG++ +P+ P
Sbjct: 834 DGQATCDACAPGYTGRRCESCAPGYE--GNPIQP 865
Score = 68.6 bits (166), Expect = 2e-11
Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 24/145 (16%)
Query: 274 CDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSCNGHARRCRFNMELYRLSGRR 333
C C G G C C P Y + + C C CNGH+ C
Sbjct: 1530 CRCPPGYIGLSCQDCAPGYT----RTGSGLYLGHCELCECNGHSDLCH-----------P 1574
Query: 334 SGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDC---HPVGAAGKTCNQTT 390
G C C+HN AG C C G+Y D + C+ C C +P +TC
Sbjct: 1575 ETGACSQCQHNAAGEFCELCAPGYYGDATAGTPE--DCQPCACPLTNPENMFSRTCESLG 1632
Query: 391 G---QC-PCKDGVTGLTCNRCAPGF 411
+C C+ G TG C +C PG+
Sbjct: 1633 AGGYRCTACEPGYTGQYCEQCGPGY 1657
Score = 48.5 bits (114), Expect = 2e-05
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 20/113 (17%)
Query: 255 CKCNGHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARESHACLACSC- 313
C+CNGH+ C +T C+H G C C P Y + ATA C C+C
Sbjct: 1563 CECNGHSDLCHPETGA--CSQCQHNAAGEFCELCAPGY----YGDATAGTPEDCQPCACP 1616
Query: 314 -----NGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDP 361
N +R C S G C C G++C C G+ +P
Sbjct: 1617 LTNPENMFSRTCE--------SLGAGGYRCTACEPGYTGQYCEQCGPGYVGNP 1661
Score = 37.7 bits (86), Expect = 0.029
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 12/128 (9%)
Query: 341 CRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCP-CKDGV 399
C G C C G+ R C C+C+ C+ TG C C+
Sbjct: 1532 CPPGYIGLSCQDCAPGYTRTGSGLYLGH--CELCECN---GHSDLCHPETGACSQCQHNA 1586
Query: 400 TGLTCNRCAPGFQQSRSPVAPCVKTPIPGPTEDSSPVQPQDCDSHCKPARGSYRISLKKF 459
G C CAPG+ + P P P + + + C+S G YR +
Sbjct: 1587 AGEFCELCAPGYYGDATAGTPEDCQPCACPLTNPENMFSRTCES---LGAGGYRCTA--- 1640
Query: 460 CKKDYAVQ 467
C+ Y Q
Sbjct: 1641 CEPGYTGQ 1648
Score = 37.4 bits (85), Expect = 0.038
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 234 RDMEAVVPYSYAATDLQVGGRCK-CNGHASRCLLDTQGHL-----ICDCRHGTEGPDCGR 287
R E+ P Y +Q GG+C+ N RC D +G + C C++ G C
Sbjct: 849 RRCESCAP-GYEGNPIQPGGKCRPVNQEIVRC--DERGSMGTSGEACRCKNNVVGRLCNE 905
Query: 288 CKPFYCDRPWQRATARESHACLACSCNGHARRC 320
C D + +T R CL C C G +R C
Sbjct: 906 C----ADGSFHLST-RNPDGCLKCFCMGVSRHC 933
Score = 36.2 bits (82), Expect = 0.085
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 248 DLQVGGRCKCN-----GHASRCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATA 302
D QV G CN +S+C D G C C+ EG C C+P + +A
Sbjct: 1266 DSQVPGPIGCNCDPQGSVSSQC--DAAGQ--CQCKAQVEGLTCSHCRPHHF-----HLSA 1316
Query: 303 RESHACLACSCNGHARRC 320
CL C C G ++C
Sbjct: 1317 SNPDGCLPCFCMGITQQC 1334
Score = 31.6 bits (70), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 392 QCPCKDGVTGLTCNRCAPGFQQSRS 416
+C C G GL+C CAPG+ ++ S
Sbjct: 1529 ECRCPPGYIGLSCQDCAPGYTRTGS 1553
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 86.3 bits (212), Expect = 7e-17
Identities = 122/508 (24%), Positives = 167/508 (32%), Gaps = 128/508 (25%)
Query: 9 LLTAGTLFAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRPATRACD 68
LL AA + A A GGA G V+A+ G + + P A
Sbjct: 12 LLCCAAAAAAAAVASAASAGNVTGGGGAA-----GQVDASPGPGLRGEPSHPFPRATAPT 66
Query: 69 ASDPRRA------HSPALLTSPGGT--ASPLCWRSESLPRAPLNVTLTVPLGKAFELVFV 120
A PR H P TSP + +PL W + P + T PLG +
Sbjct: 67 AQAPRTGPPRATVHRPLAATSPAQSPETTPL-WATAG----PSSTTFQAPLGPS------ 115
Query: 121 SLRFCSAPPASVALLKSQDHGRSWAPLGFFSSHCDLDYGRLPAPANGPAGPGPEALCFPA 180
+ PPA+ + AP ++ GPA P A PA
Sbjct: 116 ----PTTPPAAERTSTTSQAPTRPAPTTLSTT-------------TGPAPTTPVATTVPA 158
Query: 181 PLAQPDGSGLLAFSMQDS---SPPGLDLDSSPVL-QDWVTATDVRVVLTRPSTAGDPRDM 236
P + L S S +PP + SSP W A + L + + + +
Sbjct: 159 PTTPRTPTPDLPSSSNSSVLPTPPATEAPSSPPPGHQWPVAKMPQKYLGKYACESNLKSK 218
Query: 237 EAVVPYSYAATDLQVGGRCK----CNG------HASRCLLDTQGHLICDCRHGTEGPDCG 286
+P + +L+V K CN + +RC T G C+CR G +G C
Sbjct: 219 --YLPLTQPVMNLRVSEAVKTEYVCNCSVVGSLNVNRCN-QTTGQ--CECRPGYQGLHCE 273
Query: 287 RCKP-FY---------------------------------------CDRPWQRATARESH 306
CK FY CDR +
Sbjct: 274 TCKEGFYLNYTSGLCQPCDCSPHGALSIPCNSSGKCQCKVGVIGSICDRCQDGYYGFSKN 333
Query: 307 ACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALS 366
CL C CN + C G CLNC+ N+ G HC C+EGFY+ P
Sbjct: 334 GCLPCQCNNRSASC-----------DALTGACLNCQENSKGNHCEECKEGFYQSPDAT-- 380
Query: 367 DRRACRACDCHPVGAAGKTCNQTTGQCP----CKDGVTGLTCNRCAPGFQQSRSPVAPCV 422
+ C C C V + G +++ P CKDG G CN+C G+ S C
Sbjct: 381 --KECLRCPCSAVTSTGSCSIKSSELEPECDQCKDGYIGPNCNKCENGYYNFDSICRKC- 437
Query: 423 KTPIPGPTEDSSPVQPQDCDSHCKPARG 450
+ V P CKP G
Sbjct: 438 --------QCHGHVDPVKTPKICKPESG 457
Score = 50.1 bits (118), Expect = 6e-06
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 254 RCKCNGHASRCLLDTQGHLI---CD-CRHGTEGPDCGRCKPFYCDRPWQRATARESHACL 309
RC C+ S + + CD C+ G GP+C +C+ Y + C
Sbjct: 385 RCPCSAVTSTGSCSIKSSELEPECDQCKDGYIGPNCNKCENGYYNF---------DSICR 435
Query: 310 ACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRD 360
C C+GH + + G C+NC HNT G C C EG+ D
Sbjct: 436 KCQCHGHVDPVKTPKIC-----KPESGECINCLHNTTGFWCENCLEGYVHD 481
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,727,764
Number of Sequences: 37866
Number of extensions: 1819057
Number of successful extensions: 11375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 9567
Number of HSP's gapped (non-prelim): 1246
length of query: 580
length of database: 18,247,518
effective HSP length: 108
effective length of query: 472
effective length of database: 14,157,990
effective search space: 6682571280
effective search space used: 6682571280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.