Guide to the Human Genome
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Name: ATXN1 Sequence: fasta or formatted (815aa) NCBI GI: 51479158
Description:

ataxin 1

Referenced in:

Cerebellum
Polymorphism

Other entries for this name:
alt mRNA [815aa] ataxin 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         76           3
 C cysteine            0.7          6           2
 D aspartate           2.3         19           1
 E glutamate           5.3         43           2
 F phenylalanine       2.1         17           2
 G glycine             7.4         60           3
 H histidine           3.8         31           1
 I isoleucine          3.7         30           2
 K lysine              4.5         37           2
 L leucine             7.7         63           2
 M methionine          1.3         11           1
 N asparagine          2.7         22           1
 P proline            10.7         87           3
 Q glutamine           9.0         73          14
 R arginine            3.6         29           2
 S serine             10.9         89           3
 T threonine           5.9         48           2
 V valine              6.4         52           3
 W tryptophan          0.4          3           1
 Y tyrosine            2.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ataxin 1 
ATXN1                 1.000   ataxin 1 
ATXN1L                0.144   ataxin 1-like 
ATN1                  0.030   atrophin-1 
ATN1                  0.030   atrophin-1 
TBP                   0.028   TATA box binding protein 
MED12                 0.025   mediator complex subunit 12 
EP400                 0.025   E1A binding protein p400 
PAXIP1                0.025   PAX interacting protein 1 
NCOA3                 0.024   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.024   nuclear receptor coactivator 3 isoform b 
FOXP2                 0.024   forkhead box P2 isoform I 
FOXP2                 0.023   forkhead box P2 isoform III 
FOXP2                 0.023   forkhead box P2 isoform II 
MED15                 0.023   mediator complex subunit 15 isoform b 
MAML2                 0.023   mastermind-like 2 
MN1                   0.023   meningioma  1 
MAML3                 0.023   mastermind-like 3 
BMP2K                 0.022   BMP-2 inducible kinase isoform a 
BMP2K                 0.022   BMP-2 inducible kinase isoform b 
FRMPD3                0.021   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.021   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.021   PREDICTED: FERM and PDZ domain containing 3 
POU6F2                0.021   POU domain, class 6, transcription factor 2 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
THAP11                0.020   THAP domain containing 11 
NCOA6                 0.020   nuclear receptor coactivator 6 
POU3F2                0.019   POU domain, class 3, transcription factor 2 
NUMBL                 0.019   numb homolog (Drosophila)-like 
MED15                 0.019   mediator complex subunit 15 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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