Guide to the Human Genome
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Name: ANKS1B Sequence: fasta or formatted (1248aa) NCBI GI: 50511945
Description:

cajalin 2 isoform a

Referenced in:

Ankyrin Family
Gene Structure
Nucleus and Nucleolus
Additional Membrane Functions

Other entries for this name:
alt prot [414aa] cajalin 2 isoform c
alt prot [510aa] cajalin 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         72           2
 C cysteine            1.8         22           1
 D aspartate           5.1         64           3
 E glutamate           7.7         96           3
 F phenylalanine       2.2         28           1
 G glycine             6.2         77           3
 H histidine           3.7         46           2
 I isoleucine          5.4         68           2
 K lysine              6.0         75           2
 L leucine             9.5        118           2
 M methionine          1.8         22           1
 N asparagine          5.4         68           2
 P proline             6.2         78           2
 Q glutamine           4.0         50           1
 R arginine            4.6         57           4
 S serine              9.7        121           2
 T threonine           6.6         82           2
 V valine              5.2         65           2
 W tryptophan          0.9         11           1
 Y tyrosine            2.2         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cajalin 2 isoform a 
ANKS1B                0.327   cajalin 2 isoform b 
ANKS1A                0.218   ankyrin repeat and sterile alpha motif domain conta...
ANKS1B                0.181   cajalin 2 isoform c 
CASKIN2               0.075   cask-interacting protein 2 isoform a 
CASKIN1               0.072   CASK interacting protein 1 
CASKIN2               0.055   cask-interacting protein 2 isoform b 
ANK1                  0.042   ankyrin 1 isoform 9 
ANK1                  0.042   ankyrin 1 isoform 1 
ANK1                  0.042   ankyrin 1 isoform 3 
ANK1                  0.042   ankyrin 1 isoform 2 
ANK1                  0.042   ankyrin 1 isoform 4 
ANK3                  0.042   ankyrin 3 isoform 1 
ANK2                  0.039   ankyrin 2 isoform 3 
ANK2                  0.039   ankyrin 2 isoform 2 
ANK2                  0.039   ankyrin 2 isoform 1 
ANKRD50               0.039   ankyrin repeat domain 50 
ANKRD28               0.038   ankyrin repeat domain 28 
DAPK1                 0.036   death-associated protein kinase 1 
ANKK1                 0.036   ankyrin repeat and kinase domain containing 1 
RIPK4                 0.035   ankyrin repeat domain 3 
ANKRD44               0.035   ankyrin repeat domain 44 
INVS                  0.035   inversin isoform a 
INVS                  0.035   inversin isoform b 
ANKRD52               0.034   ankyrin repeat domain 52 
MIB1                  0.034   mindbomb homolog 1 
TNKS                  0.034   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD17               0.034   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.034   ankyrin repeat domain protein 17 isoform b 
ESPN                  0.034   espin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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