Guide to the Human Genome
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Name: GPC5 Sequence: fasta or formatted (572aa) NCBI GI: 4758464
Description:

glypican 5

Referenced in:

Gene Structure
Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         36           3
 C cysteine            3.5         20           2
 D aspartate           5.2         30           2
 E glutamate           5.6         32           2
 F phenylalanine       3.8         22           2
 G glycine             7.7         44           3
 H histidine           2.3         13           1
 I isoleucine          4.2         24           2
 K lysine              4.4         25           2
 L leucine            11.2         64           4
 M methionine          3.1         18           1
 N asparagine          4.4         25           1
 P proline             4.2         24           1
 Q glutamine           5.6         32           2
 R arginine            5.8         33           2
 S serine              6.8         39           3
 T threonine           5.9         34           3
 V valine              6.3         36           2
 W tryptophan          1.2          7           1
 Y tyrosine            2.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glypican 5 
GPC3                  0.365   glypican 3 
GPC6                  0.156   glypican 6 precursor 
GPC4                  0.154   glypican 4 
GPC1                  0.139   glypican 1 precursor 
GPC2                  0.107   glypican 2 
C4orf8                0.005   hypothetical protein LOC8603 
DNAJC18               0.004   DnaJ (Hsp40) homolog, subfamily C, member 18 
HECTD3                0.004   HECT domain containing 3 
LOC100289122          0.004   PREDICTED: hypothetical protein XP_002344150 
FBN2                  0.004   fibrillin 2 precursor 
DNAJB12               0.004   DnaJ (Hsp40) homolog, subfamily B, member 12 
DNAJB12               0.004   DnaJ (Hsp40) homolog, subfamily B, member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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