Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HS6ST3 Sequence: fasta or formatted (471aa) NCBI GI: 45580707
Description:

heparan sulfate 6-O-sulfotransferase 3

Referenced in:

Gene Structure
Protein Glycosylation

Other entries for this name:
alt mRNA [471aa] PREDICTED: heparan sulfate 6-O-sulfotransferase 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         23           3
 C cysteine            2.8         13           1
 D aspartate           5.1         24           2
 E glutamate           9.3         44           6
 F phenylalanine       5.5         26           2
 G glycine             5.7         27           2
 H histidine           2.8         13           2
 I isoleucine          2.5         12           1
 K lysine              4.7         22           2
 L leucine             7.9         37           2
 M methionine          2.1         10           1
 N asparagine          5.1         24           2
 P proline             7.6         36           4
 Q glutamine           4.9         23           2
 R arginine            8.9         42           2
 S serine              4.9         23           2
 T threonine           6.4         30           2
 V valine              4.2         20           2
 W tryptophan          2.1         10           1
 Y tyrosine            2.5         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate 6-O-sulfotransferase 3 
HS6ST3                1.000   PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...
HS6ST2                0.508   heparan sulfate 6-O-sulfotransferase 2 isoform S [H...
HS6ST2                0.494   heparan sulfate 6-O-sulfotransferase 2 isoform L [H...
HS6ST1                0.491   heparan sulfate 6-O-sulfotransferase 1 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.026   proline-rich protein BstNI subfamily 2 
PRB1                  0.025   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB4                  0.024   proline-rich protein BstNI subfamily 4 precursor [Ho...
CCDC9                 0.023   coiled-coil domain containing 9 
SCAF1                 0.023   SR-related CTD-associated factor 1 
PRB3                  0.022   proline-rich protein BstNI subfamily 3 precursor [H...
MEX3C                 0.020   ring finger and KH domain containing 2 
COL11A1               0.020   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.020   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.020   alpha 1 type XI collagen isoform A preproprotein [Ho...
PELP1                 0.020   proline, glutamic acid and leucine rich protein 1 [...
SFPQ                  0.020   splicing factor proline/glutamine rich (polypyrimidin...
PRB1                  0.020   proline-rich protein BstNI subfamily 1 isoform 3 pre...
COL5A1                0.019   alpha 1 type V collagen preproprotein 
HCN2                  0.018   hyperpolarization activated cyclic nucleotide-gated...
EMID1                 0.018   EMI domain containing 1 
PRH1                  0.018   proline-rich protein HaeIII subfamily 1 
CASKIN1               0.017   CASK interacting protein 1 
SLC16A2               0.017   solute carrier family 16, member 2 
PRDM2                 0.017   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.017   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.017   retinoblastoma protein-binding zinc finger protein i...
UNC13A                0.017   unc-13 homolog A 
KIAA1429              0.017   hypothetical protein LOC25962 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press