Guide to the Human Genome
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Name: ERCC3 Sequence: fasta or formatted (782aa) NCBI GI: 4557563
Description:

excision repair cross-complementing rodent repair deficiency, complementation group 3

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         54           2
 C cysteine            1.8         14           1
 D aspartate           6.1         48           2
 E glutamate           8.1         63           6
 F phenylalanine       4.2         33           2
 G glycine             5.1         40           2
 H histidine           2.3         18           1
 I isoleucine          5.0         39           2
 K lysine              7.8         61           3
 L leucine             7.7         60           2
 M methionine          2.8         22           1
 N asparagine          2.8         22           2
 P proline             4.1         32           1
 Q glutamine           4.7         37           3
 R arginine            6.1         48           2
 S serine              7.3         57           2
 T threonine           5.4         42           2
 V valine              6.9         54           2
 W tryptophan          1.0          8           1
 Y tyrosine            3.8         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   excision repair cross-complementing rodent repair def... 
C9orf102              0.009   RAD26L hypothetical protein 
PHLDB1                0.007   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.007   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.007   pleckstrin homology-like domain, family B, member 1 ...
CCAR1                 0.006   cell-cycle and apoptosis regulatory protein 1 
RAB11FIP4             0.006   RAB11 family interacting protein 4 (class II) 
CHD6                  0.005   chromodomain helicase DNA binding protein 6 
ZBTB7C                0.005   zinc finger and BTB domain containing 7C 
LOC341378             0.005   PREDICTED: similar to Thyroid hormone receptor inte...
LOC341378             0.005   PREDICTED: similar to Thyroid hormone receptor inte...
LOC341378             0.005   PREDICTED: hypothetical protein 
IFIH1                 0.005   interferon induced with helicase C domain 1 
EHMT2                 0.005   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.005   euchromatic histone-lysine N-methyltransferase 2 is...
HDAC2                 0.005   histone deacetylase 2 
NUMA1                 0.005   nuclear mitotic apparatus protein 1 
FAM164A               0.005   hypothetical protein LOC51101 
CHST9                 0.005   GalNAc-4-sulfotransferase 2 
USP16                 0.005   ubiquitin specific protease 16 isoform b 
USP16                 0.005   ubiquitin specific protease 16 isoform a 
USP16                 0.005   ubiquitin specific protease 16 isoform a 
KDM6B                 0.005   lysine (K)-specific demethylase 6B 
CAST                  0.005   calpastatin isoform l 
CAST                  0.005   calpastatin isoform k 
CAST                  0.005   calpastatin isoform j 
CAST                  0.005   calpastatin isoform i 
CAST                  0.005   calpastatin isoform h 
CAST                  0.005   calpastatin isoform g 
CAST                  0.005   calpastatin isoform f 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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