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Search of human proteins with 4507241
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507241 structure specific recognition protein 1 [Homo
sapiens]
(709 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 1423 0.0
gi|4504425 high-mobility group box 1 [Homo sapiens] 93 7e-19
gi|194688135 high-mobility group box 2 [Homo sapiens] 93 1e-18
gi|194688133 high-mobility group box 2 [Homo sapiens] 93 1e-18
gi|11321591 high-mobility group box 2 [Homo sapiens] 93 1e-18
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 90 8e-18
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 86 9e-17
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 86 9e-17
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 86 9e-17
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 85 2e-16
gi|71143137 high-mobility group box 3 [Homo sapiens] 85 2e-16
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 84 3e-16
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 83 1e-15
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 83 1e-15
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 82 2e-15
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 82 2e-15
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 82 2e-15
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 80 5e-15
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 80 5e-15
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 80 5e-15
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 80 7e-15
gi|226246533 TOX high mobility group box family member 3 isoform... 79 2e-14
gi|226054295 TOX high mobility group box family member 3 isoform... 79 2e-14
gi|149408144 TOX high mobility group box family member 2 isoform... 79 2e-14
gi|149408141 TOX high mobility group box family member 2 isoform... 79 2e-14
gi|14249636 TOX high mobility group box family member 2 isoform ... 79 2e-14
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 78 2e-14
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 77 6e-14
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 77 6e-14
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 75 2e-13
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 1423 bits (3683), Expect = 0.0
Identities = 709/709 (100%), Positives = 709/709 (100%)
Query: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA 180
FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA 180
Query: 181 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL 240
FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL
Sbjct: 181 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL 240
Query: 241 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG 300
RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG
Sbjct: 241 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG 300
Query: 301 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI 360
RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI
Sbjct: 301 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI 360
Query: 361 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA 420
YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA
Sbjct: 361 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA 420
Query: 421 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE 480
KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE
Sbjct: 421 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE 480
Query: 481 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK 540
SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK
Sbjct: 481 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK 540
Query: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600
GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF 660
EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF
Sbjct: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF 660
Query: 661 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE 709
KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE
Sbjct: 661 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE 709
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 93.2 bits (230), Expect = 7e-19
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Query: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 540
++ D + F + S + S +++ K + + KA A+ + K K KK
Sbjct: 29 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 88
Query: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600
KDPNAPKRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+ +++KA
Sbjct: 89 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 601 EDARRDYEKAMKEYEG-GRGESSKR-----DKSKKKKK 632
+ YEK + Y G+ +++K+ +KSKKKK+
Sbjct: 149 AKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKE 186
Score = 64.7 bits (156), Expect = 3e-10
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 41/208 (19%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600
DP P+ MS+Y ++ RE+ K HP S+ ++ SKK E WK MS ++K +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKME-------- 638
+ + YE+ MK Y +GE+ K+ K K K+K E
Sbjct: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
Query: 639 -KKSTPSRGSSSKSSSRQLSE--SFKSKEFVSSDES---SSGE-----------NKSKKK 681
K +++ + +Q E + K KE D + + G+ KSKKK
Sbjct: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
Query: 682 RRRSEDSEEEELASTPPSSEDSASGSDE 709
+ ED E+EE ED D+
Sbjct: 185 KEEEEDEEDEEDEEEEEDEEDEDEEEDD 212
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 92.8 bits (229), Expect = 1e-18
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 479 DESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEV 538
D S N E + +E + + ++ S E + D KA+ ++ K+ P
Sbjct: 33 DSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD--------KARYDREMKNYVPPKGD 84
Query: 539 KKGK--DPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEW 596
KKGK DPNAPKRP SA+ L+ + R KIKS+HPG+SI D +KK GE+W S + K+ +
Sbjct: 85 KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPY 144
Query: 597 DRKAEDARRDYEKAMKEYEG-GRGESSKRDK-----SKKKKKVKVKMEKK 640
++KA + YEK + Y G+ E+ K+ SKKK + + + E++
Sbjct: 145 EQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 92.8 bits (229), Expect = 1e-18
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 479 DESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEV 538
D S N E + +E + + ++ S E + D KA+ ++ K+ P
Sbjct: 33 DSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD--------KARYDREMKNYVPPKGD 84
Query: 539 KKGK--DPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEW 596
KKGK DPNAPKRP SA+ L+ + R KIKS+HPG+SI D +KK GE+W S + K+ +
Sbjct: 85 KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPY 144
Query: 597 DRKAEDARRDYEKAMKEYEG-GRGESSKRDK-----SKKKKKVKVKMEKK 640
++KA + YEK + Y G+ E+ K+ SKKK + + + E++
Sbjct: 145 EQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 92.8 bits (229), Expect = 1e-18
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 479 DESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEV 538
D S N E + +E + + ++ S E + D KA+ ++ K+ P
Sbjct: 33 DSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD--------KARYDREMKNYVPPKGD 84
Query: 539 KKGK--DPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEW 596
KKGK DPNAPKRP SA+ L+ + R KIKS+HPG+SI D +KK GE+W S + K+ +
Sbjct: 85 KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPY 144
Query: 597 DRKAEDARRDYEKAMKEYEG-GRGESSKRDK-----SKKKKKVKVKMEKK 640
++KA + YEK + Y G+ E+ K+ SKKK + + + E++
Sbjct: 145 EQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 89.7 bits (221), Expect = 8e-18
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 17/162 (10%)
Query: 488 EEDVAEEFDSNASASSSSNEGD------SDRDEKKRKQLKKAKMAKDRKSRK-----KPV 536
EE + D++ + S SN+ S +++ K + + KA + K K
Sbjct: 25 EEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAKADKTHYERQMKTYIPPKGE 84
Query: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEW 596
KK KDPNAPKRP SA+ L+ + KIK +HPG+SI D++KK GE+W + + K+
Sbjct: 85 TKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPG 144
Query: 597 DRKAEDARRDYEKAMKEYEG-GRGESSKR-----DKSKKKKK 632
++KA + YEK + Y+ G+ E++K+ +KSKKKK+
Sbjct: 145 EKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKE 186
Score = 59.7 bits (143), Expect = 9e-09
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600
DP P+ MS+Y ++ RE+ K H S+ ++ S K E WK MS ++K +++ A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKMEKKSTPSRG 646
+ + YE+ MK Y +GE+ K+ K K K+K E G
Sbjct: 65 KADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHP-----G 119
Query: 647 SSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSE 686
S +++L E + + ++D+ GE K+ K + + E
Sbjct: 120 LSIGDVAKKLGEMWNN---TAADDKQPGEKKAAKLKEKYE 156
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 86.3 bits (212), Expect = 9e-17
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Query: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKD 543
++ +V F + S + S +++ K ++ K K+ D++ + PVE K KD
Sbjct: 29 KKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVDKVHYDQEMKDNGPVEGGKKKD 88
Query: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
PNA KRP+S + L+ + KIKS +PGISI D++KK GE+W S +K+ + KA D
Sbjct: 89 PNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITKAADL 148
Query: 604 RRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVK 636
+ YEK + +Y+ G+ +S+K KKVK K
Sbjct: 149 KEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEK 182
Score = 45.1 bits (105), Expect = 2e-04
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 37/187 (19%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
D PK MSAY + RE+ K +P + + + SKK E K MS ++K ++D A
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 601 EDARRDYEKAMKE---YEGGRGES-----------------------------SKRDKSK 628
+ + Y++ MK+ EGG+ + S D +K
Sbjct: 65 KVDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAK 124
Query: 629 KKKKVKVK---MEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRS 685
K ++ + EK+ ++ + K + +KSK S + + K K +
Sbjct: 125 KLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEKDK 184
Query: 686 EDSEEEE 692
ED EEEE
Sbjct: 185 EDEEEEE 191
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 86.3 bits (212), Expect = 9e-17
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Query: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKD 543
++ +V F + S + S +++ K ++ K K+ D++ + PVE K KD
Sbjct: 29 KKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVDKVHYDQEMKDNGPVEGGKKKD 88
Query: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
PNA KRP+S + L+ + KIKS +PGISI D++KK GE+W S +K+ + KA D
Sbjct: 89 PNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITKAADL 148
Query: 604 RRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVK 636
+ YEK + +Y+ G+ +S+K KKVK K
Sbjct: 149 KEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEK 182
Score = 45.1 bits (105), Expect = 2e-04
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 37/187 (19%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
D PK MSAY + RE+ K +P + + + SKK E K MS ++K ++D A
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 601 EDARRDYEKAMKE---YEGGRGES-----------------------------SKRDKSK 628
+ + Y++ MK+ EGG+ + S D +K
Sbjct: 65 KVDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAK 124
Query: 629 KKKKVKVK---MEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRS 685
K ++ + EK+ ++ + K + +KSK S + + K K +
Sbjct: 125 KLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEKDK 184
Query: 686 EDSEEEE 692
ED EEEE
Sbjct: 185 EDEEEEE 191
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 86.3 bits (212), Expect = 9e-17
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Query: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKD 543
++ +V F + S + S +++ K ++ K K+ D++ + PVE K KD
Sbjct: 29 KKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVDKVHYDQEMKDNGPVEGGKKKD 88
Query: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
PNA KRP+S + L+ + KIKS +PGISI D++KK GE+W S +K+ + KA D
Sbjct: 89 PNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITKAADL 148
Query: 604 RRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVK 636
+ YEK + +Y+ G+ +S+K KKVK K
Sbjct: 149 KEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEK 182
Score = 45.1 bits (105), Expect = 2e-04
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 37/187 (19%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
D PK MSAY + RE+ K +P + + + SKK E K MS ++K ++D A
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 601 EDARRDYEKAMKE---YEGGRGES-----------------------------SKRDKSK 628
+ + Y++ MK+ EGG+ + S D +K
Sbjct: 65 KVDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAK 124
Query: 629 KKKKVKVK---MEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRS 685
K ++ + EK+ ++ + K + +KSK S + + K K +
Sbjct: 125 KLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEKDK 184
Query: 686 EDSEEEE 692
ED EEEE
Sbjct: 185 EDEEEEE 191
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 85.1 bits (209), Expect = 2e-16
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 8/178 (4%)
Query: 503 SSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKKGKDPNAPKRPMSAYMLW 557
S+ +G R K + + KA A ++ K K KK KDPNAPKRP SA+ L+
Sbjct: 182 SAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLY 241
Query: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG- 616
+ KIK + PG+S D++KK GE+W + + K+ +++++ + YEK + Y
Sbjct: 242 FSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAK 301
Query: 617 GRGESSKRD--KSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESS 672
G+ +++ K+ K KK K + E + K + E + +E DE S
Sbjct: 302 GKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDEQS 359
Score = 44.3 bits (103), Expect = 4e-04
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 547 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDR---KAED- 602
P RP ++ L++ ++ ++ SKK E WK MS ++K ++ R K ED
Sbjct: 140 PVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDM 199
Query: 603 ARRD---YEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKMEK------ 639
A+ D Y++ MK Y +GE+ K+ K K K+K E+
Sbjct: 200 AKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFG 259
Query: 640 ---KSTPSRGSSSKSSSRQLSE--SFKSKEFVSSDES---SSGEN-----------KSKK 680
K +++ + +Q E S K KE D + + G++ KSKK
Sbjct: 260 DVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKK 319
Query: 681 KRRRSEDSEEEELASTPPSSEDSASGSDE 709
K+ E+ E+EE ED DE
Sbjct: 320 KKEEEENEEDEEDEEEEKDEEDEDEEDDE 348
Score = 31.2 bits (69), Expect = 3.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 448 QHDA----YLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNAS 500
+HDA ++ K + K EE + +D EE DE E++ED E+ D S
Sbjct: 303 KHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDEQS 359
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 85.1 bits (209), Expect = 2e-16
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 494 EFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSA 553
EF S + G + + K + ++ K KK KDPNAPKRP S
Sbjct: 40 EFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSG 99
Query: 554 YMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKE 613
+ L+ + R KIKS +PGISI D++KK GE+W ++ +K+ + KA + YEK + +
Sbjct: 100 FFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVAD 159
Query: 614 YEG-GRGESSKRDKSKKKKKVKVKMEKK 640
Y+ G+ + +K +KKV+ + E++
Sbjct: 160 YKSKGKFDGAKGPAKVARKKVEEEDEEE 187
Score = 67.0 bits (162), Expect = 6e-11
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
DP PK MSAY ++ RE+ K +P + + + SKK E WK MS ++K ++D A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKK------------KVKVKMEK--------- 639
+ + Y++ MK+Y +G K+D + K+ + K+K
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVA 124
Query: 640 KSTPSRGSSSKSSSRQ--LSESFKSKEFVSSD----------ESSSGENKSKKKRRRSED 687
K ++ S +Q ++++ K KE D + + G K +K+ ED
Sbjct: 125 KKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEED 184
Query: 688 SEEEELASTPPSSED 702
EEEE ED
Sbjct: 185 EEEEEEEEEEEEEED 199
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 84.3 bits (207), Expect = 3e-16
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 6/176 (3%)
Query: 503 SSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKKGKDPNAPKRPMSAYMLW 557
S+ +G R K + + KA A ++ K K KK KDPNAPKRP SA+ L+
Sbjct: 182 SAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLY 241
Query: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG- 616
+ KIK + PG+S D++KK GE+W + + K+ +++++ + YEK + Y
Sbjct: 242 FSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAK 301
Query: 617 GRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESS 672
G+ +++ K K K K E+++ + E E DE S
Sbjct: 302 GKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGDDEQS 357
Score = 41.6 bits (96), Expect = 0.003
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 45/208 (21%)
Query: 547 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDR---KAED- 602
P RP ++ L++ ++ ++ SKK E WK MS ++K ++ R K ED
Sbjct: 140 PVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDM 199
Query: 603 ARRD---YEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKMEK------ 639
A+ D Y++ MK Y +GE+ K+ K K K+K E+
Sbjct: 200 AKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFG 259
Query: 640 ---KSTPSRGSSSKSSSRQLSE--SFKSKEFVSS-----------DESSSGENKS--KKK 681
K +++ + +Q E S K KE D +++G K+ KK
Sbjct: 260 DVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKK 319
Query: 682 RRRSEDSEEEELASTPPSSEDSASGSDE 709
++ E++EE+E ED DE
Sbjct: 320 KKEEEENEEDEEDEEEEKDEDEDEEDDE 347
Score = 32.3 bits (72), Expect = 1.6
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 23/167 (13%)
Query: 406 IEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREE 465
I+ E G F V K + N + P Y++ + +++++ + + +GK
Sbjct: 249 IKGERPGLSFGDVAKKLGEMWNNTAADDKQP-YEKRSAKLKEKYEKDIAAYRAKGKHDAA 307
Query: 466 NANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKM 525
N ++ E E+EED EE D + +E D D DE+ QL A
Sbjct: 308 NNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGD-DEQSHWQLFLACC 366
Query: 526 AKDRK-------------SRKKPV--------EVKKGKDPNAPKRPM 551
+D++ + K PV K+G D NA RP+
Sbjct: 367 PEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPL 413
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 82.8 bits (203), Expect = 1e-15
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 31/196 (15%)
Query: 503 SSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKKGKDPNAPKRPMSAYMLW 557
S+ +G R K + + KA A ++ K K KK KDPNAPKRP SA+ L+
Sbjct: 182 SAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLY 241
Query: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG- 616
+ KIK + PG+S D++KK GE+W + + K+ +++++ + YEK + Y
Sbjct: 242 FSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAK 301
Query: 617 GRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGEN 676
G+ +++ K K K K E+++ DE E
Sbjct: 302 GKHDAANNGVVKAAKSKKKKEEEEN-------------------------EEDEEDEEEE 336
Query: 677 KSKKKRRRSEDSEEEE 692
K ++ +D +EE+
Sbjct: 337 KDEEDEDEEDDEDEED 352
Score = 44.3 bits (103), Expect = 4e-04
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 547 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDR---KAED- 602
P RP ++ L++ ++ ++ SKK E WK MS ++K ++ R K ED
Sbjct: 140 PVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDM 199
Query: 603 ARRD---YEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKMEK------ 639
A+ D Y++ MK Y +GE+ K+ K K K+K E+
Sbjct: 200 AKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFG 259
Query: 640 ---KSTPSRGSSSKSSSRQLSE--SFKSKEFVSSDES---SSGEN-----------KSKK 680
K +++ + +Q E S K KE D + + G++ KSKK
Sbjct: 260 DVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKK 319
Query: 681 KRRRSEDSEEEELASTPPSSEDSASGSDE 709
K+ E+ E+EE ED DE
Sbjct: 320 KKEEEENEEDEEDEEEEKDEEDEDEEDDE 348
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 82.8 bits (203), Expect = 1e-15
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 490 DVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKA-KMAKDRKSRKKPVEVKKGKDPNAPK 548
D + EF S + G +++ K ++ K K+ DR+ + KK KDP+APK
Sbjct: 15 DKSPEFSKKCSERWKTMSG---KEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPK 71
Query: 549 RPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYE 608
RP S + L+ + R KIKS +PGISI D++KK GE+W ++ +K+ + K + YE
Sbjct: 72 RPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYE 131
Query: 609 KAMKEYEG-GRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKS 651
K + + + G+ + SKR KKV+ + E + R + +S
Sbjct: 132 KDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMNKQS 175
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 82.0 bits (201), Expect = 2e-15
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD 568
S +++ K ++ K K+ DR+ + KK KDP+APKRP S + L+ + R KIKS
Sbjct: 50 SGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKST 109
Query: 569 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDKS 627
+PGISI D++KK GE+W ++ +K+ + K + YEK + + + G+ + SKR
Sbjct: 110 NPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAK 169
Query: 628 KKKKKVKVKMEKKSTPSRGSSSKS 651
KKV+ + E + R + +S
Sbjct: 170 VAWKKVEEEDEDEEEMRRRMNKQS 193
Score = 55.8 bits (133), Expect = 1e-07
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 38/185 (20%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAED 602
DP PK MSAY+ ++ RE+ K +P ++ + SKK E WK MS ++K ++D A+
Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKT 63
Query: 603 ARRDYEKAMKEYEGGRGESSKRDKSKKKK--------KVKVKMEKKSTPSRGSSSKSSSR 654
+ ++ MK +G K+D S K+ +++ + KST + G S ++
Sbjct: 64 DKVHCDREMK--GPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKST-NPGISIGDVAK 120
Query: 655 QLSESF-------------KSKEFVSSDESSSGENKSKK-------------KRRRSEDS 688
+L E + K+ + E ++KSK K+ ED
Sbjct: 121 KLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDE 180
Query: 689 EEEEL 693
+EEE+
Sbjct: 181 DEEEM 185
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 82.0 bits (201), Expect = 2e-15
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD 568
S +++ K ++ K K+ DR+ + KK KDP+APKRP S + L+ + R KIKS
Sbjct: 50 SGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKST 109
Query: 569 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDKS 627
+PGISI D++KK GE+W ++ +K+ + K + YEK + + + G+ + SKR
Sbjct: 110 NPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAK 169
Query: 628 KKKKKVKVKMEKKSTPSRGSSSKS 651
KKV+ + E + R + +S
Sbjct: 170 VAWKKVEEEDEDEEEMRRRMNKQS 193
Score = 55.8 bits (133), Expect = 1e-07
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 38/185 (20%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAED 602
DP PK MSAY+ ++ RE+ K +P ++ + SKK E WK MS ++K ++D A+
Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKT 63
Query: 603 ARRDYEKAMKEYEGGRGESSKRDKSKKKK--------KVKVKMEKKSTPSRGSSSKSSSR 654
+ ++ MK +G K+D S K+ +++ + KST + G S ++
Sbjct: 64 DKVHCDREMK--GPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKST-NPGISIGDVAK 120
Query: 655 QLSESF-------------KSKEFVSSDESSSGENKSKK-------------KRRRSEDS 688
+L E + K+ + E ++KSK K+ ED
Sbjct: 121 KLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDE 180
Query: 689 EEEEL 693
+EEE+
Sbjct: 181 DEEEM 185
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 82.0 bits (201), Expect = 2e-15
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD 568
S +++ K ++ K K+ DR+ + KK KDP+APKRP S + L+ + R KIKS
Sbjct: 50 SGKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKST 109
Query: 569 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDKS 627
+PGISI D++KK GE+W ++ +K+ + K + YEK + + + G+ + SKR
Sbjct: 110 NPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAK 169
Query: 628 KKKKKVKVKMEKKSTPSRGSSSKS 651
KKV+ + E + R + +S
Sbjct: 170 VAWKKVEEEDEDEEEMRRRMNKQS 193
Score = 55.8 bits (133), Expect = 1e-07
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 38/185 (20%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAED 602
DP PK MSAY+ ++ RE+ K +P ++ + SKK E WK MS ++K ++D A+
Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKT 63
Query: 603 ARRDYEKAMKEYEGGRGESSKRDKSKKKK--------KVKVKMEKKSTPSRGSSSKSSSR 654
+ ++ MK +G K+D S K+ +++ + KST + G S ++
Sbjct: 64 DKVHCDREMK--GPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKST-NPGISIGDVAK 120
Query: 655 QLSESF-------------KSKEFVSSDESSSGENKSKK-------------KRRRSEDS 688
+L E + K+ + E ++KSK K+ ED
Sbjct: 121 KLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDE 180
Query: 689 EEEEL 693
+EEE+
Sbjct: 181 DEEEM 185
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 80.5 bits (197), Expect = 5e-15
Identities = 48/133 (36%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKDPNAPKRPMSAYMLWLNASREKIKS 567
S +++ K ++ KA ++ DR+ + P + K KDPNAPKRP S + L+ + R KIKS
Sbjct: 53 SSKEKFKFGEMAKADEVCYDREMKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKS 112
Query: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE-GGRGESSKRDK 626
+PGISI D++KK GE+W ++ +K+ + KA + YEK + + + G+ +KR
Sbjct: 113 TNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPA 172
Query: 627 SKKKKKVKVKMEK 639
+KKV+ + E+
Sbjct: 173 KVARKKVEEEDEE 185
Score = 44.3 bits (103), Expect = 4e-04
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
DP P+ MSAY + ++ K +P + + + SKK WK MS ++K ++ A
Sbjct: 5 DPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKFGEMA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKK 630
+ Y++ MK+Y +G K + K+
Sbjct: 65 KADEVCYDREMKDYGPAKGGKKKDPNAPKR 94
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 80.5 bits (197), Expect = 5e-15
Identities = 48/133 (36%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKDPNAPKRPMSAYMLWLNASREKIKS 567
S +++ K ++ KA ++ DR+ + P + K KDPNAPKRP S + L+ + R KIKS
Sbjct: 53 SSKEKFKFGEMAKADEVCYDREMKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKS 112
Query: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE-GGRGESSKRDK 626
+PGISI D++KK GE+W ++ +K+ + KA + YEK + + + G+ +KR
Sbjct: 113 TNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPA 172
Query: 627 SKKKKKVKVKMEK 639
+KKV+ + E+
Sbjct: 173 KVARKKVEEEDEE 185
Score = 44.7 bits (104), Expect = 3e-04
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
DP P+ MSAY + ++ K +P + + + SKK WK MS ++K ++ A
Sbjct: 5 DPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGEMA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKK 630
+ Y++ MK+Y +G K + K+
Sbjct: 65 KADEVCYDREMKDYGPAKGGKKKDPNAPKR 94
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 80.5 bits (197), Expect = 5e-15
Identities = 48/133 (36%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKDPNAPKRPMSAYMLWLNASREKIKS 567
S +++ K ++ KA ++ DR+ + P + K KDPNAPKRP S + L+ + R KIKS
Sbjct: 53 SSKEKFKFGEMAKADEVCYDREMKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKS 112
Query: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE-GGRGESSKRDK 626
+PGISI D++KK GE+W ++ +K+ + KA + YEK + + + G+ +KR
Sbjct: 113 TNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPA 172
Query: 627 SKKKKKVKVKMEK 639
+KKV+ + E+
Sbjct: 173 KVARKKVEEEDEE 185
Score = 44.7 bits (104), Expect = 3e-04
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
DP P+ MSAY + ++ K +P + + + SKK WK MS ++K ++ A
Sbjct: 5 DPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGEMA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKK 630
+ Y++ MK+Y +G K + K+
Sbjct: 65 KADEVCYDREMKDYGPAKGGKKKDPNAPKR 94
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 80.1 bits (196), Expect = 7e-15
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 17/179 (9%)
Query: 465 ENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAK 524
E+ N++ D EE + NP D + +F S + + +++ K + + KA
Sbjct: 688 ESHNNTLVDPCEEHKKK-NP-----DASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKAD 741
Query: 525 MAKDRKSRK-----KPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSK 579
A + K K + KK KDPNAPKRP A+ L+ + R KIK +HPG+SI D+ K
Sbjct: 742 KAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVK 801
Query: 580 KAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKR-----DKSKKKKK 632
K +W + K+ +++KA + Y+K + Y G+ S+K+ +KSKKKK+
Sbjct: 802 KLAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKE 860
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 78.6 bits (192), Expect = 2e-14
Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Query: 498 NASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLW 557
+A+ S SS+ + D DE R + + + A D + K + KK KDPN P++P+SAY L+
Sbjct: 202 SATPSPSSSINEEDADEANRA-IGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALF 260
Query: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGG 617
++ IK +P + ++SK +W + +E+K+ + RK E A+++Y KA+ Y
Sbjct: 261 FRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 320
Query: 618 RGESSKRDKSKKKKKVKVKMEKKST 642
+ + ++ + V+ ST
Sbjct: 321 LVSKAAAESAEAQTIRSVQQTLAST 345
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 78.6 bits (192), Expect = 2e-14
Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Query: 498 NASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLW 557
+A+ S SS+ + D DE R + + + A D + K + KK KDPN P++P+SAY L+
Sbjct: 207 SATPSPSSSINEEDADEANRA-IGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALF 265
Query: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGG 617
++ IK +P + ++SK +W + +E+K+ + RK E A+++Y KA+ Y
Sbjct: 266 FRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRAS 325
Query: 618 RGESSKRDKSKKKKKVKVKMEKKST 642
+ + ++ + V+ ST
Sbjct: 326 LVSKAAAESAEAQTIRSVQQTLAST 350
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 78.6 bits (192), Expect = 2e-14
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 500 SASSSSNEGDSDRDEK----KRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYM 555
S SSS+ E +S+ K KR K AK+ K +KK KDPN P++P+SAY
Sbjct: 202 SPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKK-------KDPNEPQKPVSAYA 254
Query: 556 LWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE 615
L+ ++ IK +P + D+SK +W + +E+K+ + RK E A+++Y KA+ Y
Sbjct: 255 LFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYR 314
Query: 616 GGRGESSKRDKSKKK 630
S D+ + K
Sbjct: 315 ASLVSKSSPDQGETK 329
>gi|149408141 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 78.6 bits (192), Expect = 2e-14
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 500 SASSSSNEGDSDRDEK----KRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYM 555
S SSS+ E +S+ K KR K AK+ K +KK KDPN P++P+SAY
Sbjct: 160 SPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKK-------KDPNEPQKPVSAYA 212
Query: 556 LWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE 615
L+ ++ IK +P + D+SK +W + +E+K+ + RK E A+++Y KA+ Y
Sbjct: 213 LFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYR 272
Query: 616 GGRGESSKRDKSKKK 630
S D+ + K
Sbjct: 273 ASLVSKSSPDQGETK 287
>gi|14249636 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 78.6 bits (192), Expect = 2e-14
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 500 SASSSSNEGDSDRDEK----KRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYM 555
S SSS+ E +S+ K KR K AK+ K +KK KDPN P++P+SAY
Sbjct: 160 SPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKK-------KDPNEPQKPVSAYA 212
Query: 556 LWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYE 615
L+ ++ IK +P + D+SK +W + +E+K+ + RK E A+++Y KA+ Y
Sbjct: 213 LFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYR 272
Query: 616 GGRGESSKRDKSKKK 630
S D+ + K
Sbjct: 273 ASLVSKSSPDQGETK 287
>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 227
Score = 78.2 bits (191), Expect = 2e-14
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 15/184 (8%)
Query: 471 SDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNE------------GDSDRDEKKRK 518
SD G + GE EE + + ++ SS E GDS +KK
Sbjct: 2 SDSIGFKKKFRLQSGESEEAASGSHSHSHCSTLSSIETAPGQVRAKQALGDSALLKKKSS 61
Query: 519 -QLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDL 577
Q+ ++ +S ++ K +DPNAPK P A+ ++ + KIK +HPG+SI+D+
Sbjct: 62 TQMLQSTSQSFLRSAQRAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDV 120
Query: 578 SKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVK 636
+KK GE+W ++++ K +++KA + YEK + + G G+ +++K+ K +K K K
Sbjct: 121 AKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKK 180
Query: 637 MEKK 640
E K
Sbjct: 181 EEDK 184
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 77.0 bits (188), Expect = 6e-14
Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKDPNAPKRPMSAYMLWLNASREKIKS 567
S +++ K +L KA K+ D++ + P + K KDPNAPKRP S + L+ + K KS
Sbjct: 53 SKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKS 112
Query: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDK 626
+PGI I D++KK GE+WK ++ +K+ + +A + YEK + Y+ G+ + +K
Sbjct: 113 TNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPA 172
Query: 627 SKKKKKVKVKME 638
+KKV+ + E
Sbjct: 173 KVAQKKVEEEDE 184
Score = 58.5 bits (140), Expect = 2e-08
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
DP PK MSAY ++ RE+ K +P + I + SKK E WK MSK++K +++ A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKK 630
+ + Y++ +K+Y +G K + K+
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 77.0 bits (188), Expect = 6e-14
Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 510 SDRDEKKRKQLKKA-KMAKDRKSRKK-PVEVKKGKDPNAPKRPMSAYMLWLNASREKIKS 567
S +++ K +L KA K+ D++ + P + K KDPNAPKRP S + L+ + K KS
Sbjct: 53 SKKEKSKFNELAKADKVHYDQEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKS 112
Query: 568 DHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDK 626
+PGI I D++KK GE+WK ++ +K+ + +A + YEK + Y+ G+ + +K
Sbjct: 113 TNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPA 172
Query: 627 SKKKKKVKVKME 638
+KKV+ + E
Sbjct: 173 KVAQKKVEEEDE 184
Score = 58.5 bits (140), Expect = 2e-08
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
DP PK MSAY ++ RE+ K +P + I + SKK E WK MSK++K +++ A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKK 630
+ + Y++ +K+Y +G K + K+
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 75.5 bits (184), Expect = 2e-13
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Query: 498 NASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLW 557
+A+ S SS+ + + D+ + + + A D + K + KK KDPN P++P+SAY L+
Sbjct: 212 SATPSPSSSVHEDEGDDTSKINGGEKRPASDMGKKPKTPKKKKKKDPNEPQKPVSAYALF 271
Query: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGG 617
++ IK +P + ++SK +W G+ +E+K+ + +K E A+++Y K + Y
Sbjct: 272 FRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRAS 331
Query: 618 R-GESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF 660
+S K + + K + G S S+ LS +
Sbjct: 332 LVSKSYSEPVDVKTSQPPQLINSKPSVFHGPSQAHSALYLSSHY 375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,069,833
Number of Sequences: 37866
Number of extensions: 1273142
Number of successful extensions: 19015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 809
Number of HSP's that attempted gapping in prelim test: 8046
Number of HSP's gapped (non-prelim): 6284
length of query: 709
length of database: 18,247,518
effective HSP length: 109
effective length of query: 600
effective length of database: 14,120,124
effective search space: 8472074400
effective search space used: 8472074400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.