Guide to the Human Genome
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Name: PEX10 Sequence: fasta or formatted (326aa) NCBI GI: 4505715
Description:

peroxisome biogenesis factor 10 isoform 2

Referenced in:

Peroxisomes
Ring Finger Proteins

Other entries for this name:
alt prot [346aa] peroxisome biogenesis factor 10 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         30           3
 C cysteine            3.1         10           1
 D aspartate           2.1          7           1
 E glutamate           5.8         19           2
 F phenylalanine       2.1          7           1
 G glycine             7.7         25           2
 H histidine           4.3         14           2
 I isoleucine          2.8          9           2
 K lysine              2.8          9           1
 L leucine            15.6         51           2
 M methionine          0.9          3           1
 N asparagine          0.3          1           1
 P proline             5.2         17           2
 Q glutamine           4.3         14           2
 R arginine           12.0         39           2
 S serine              6.1         20           2
 T threonine           4.0         13           2
 V valine              5.5         18           1
 W tryptophan          2.1          7           1
 Y tyrosine            4.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisome biogenesis factor 10 isoform 2 
PEX10                 0.981   peroxisome biogenesis factor 10 isoform 1 
RNF5                  0.042   ring finger protein 5 
RNF151                0.042   ring finger protein 151 
RNFT1                 0.040   PTD016 protein 
RNF181                0.037   ring finger protein 181 
AMFR                  0.037   autocrine motility factor receptor 
LONRF3                0.037   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.037   LON peptidase N-terminal domain and ring finger 3 is...
CBLB                  0.036   Cas-Br-M (murine) ecotropic retroviral transforming ...
TRIM47                0.036   tripartite motif-containing 47 
CBL                   0.036   Cas-Br-M (murine) ecotropic retroviral transforming ...
BFAR                  0.036   bifunctional apoptosis regulator 
LONRF2                0.036   LON peptidase N-terminal domain and ring finger 2 [...
RNF185                0.036   ring finger protein 185 isoform 1 
RNF185                0.036   ring finger protein 185 isoform 1 
RNFT2                 0.036   transmembrane protein 118 isoform 1 
TRIM22                0.034   tripartite motif-containing 22 
RNF146                0.034   ring finger protein 146 
TRIM65                0.034   tripartite motif-containing 65 
LNX2                  0.034   ligand of numb-protein X 2 
CBLC                  0.034   Cas-Br-M (murine) ecotropic retroviral transforming...
CBLC                  0.034   Cas-Br-M (murine) ecotropic retroviral transforming...
RNF125                0.033   ring finger protein 125 
TRIM26                0.033   tripartite motif-containing 26 
PDZRN3                0.033   PDZ domain containing ring finger 3 
TRIM5                 0.031   tripartite motif protein TRIM5 isoform alpha 
TRIM5                 0.031   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.031   tripartite motif protein TRIM5 isoform gamma 
SFRS2IP               0.031   splicing factor, arginine/serine-rich 2, interactin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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